Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G148861 Glycine max HOM05D003658 ORTHO05D004457 2.2e-108 395.6 195 100.0
Glyma.15G045100 Glycine max HOM05D003658 ORTHO05D004457 3.7e-63 245.4 151 86.8
Glyma.13G328600 Glycine max HOM05D003658 ORTHO05D004457 1.6e-61 240.0 160 81.2
VMungo1080G1458 Vigna mungo HOM05D003658 ORTHO05D004457 7.8e-53 211.1 163 75.5
Phvul.005G137400 Phaseolus vulgaris HOM05D003658 ORTHO05D004457 1.1e-49 200.7 140 79.3
Thecc.07G099900 Theobroma cacao HOM05D003658 ORTHO05D004457 1.7e-44 183.3 165 63.0
Lj3g0017853 Lotus japonicus HOM05D003658 ORTHO05D004457 2.3e-44 183.0 170 65.3
COL.COLO4_32786 Corchorus olitorius HOM05D003658 ORTHO05D004457 1.1e-43 180.6 160 63.8
MD11G1125100 Malus domestica HOM05D003658 ORTHO05D004457 5.6e-43 178.3 158 63.3
Duzib170G0243 Durio zibethinus HOM05D003658 ORTHO05D004457 9.5e-43 177.6 160 64.4
Prupe.6G093800 Prunus persica HOM05D003658 ORTHO05D004457 1.2e-42 177.2 150 65.3
Lalb_Chr24g0394441 Lupinus albus HOM05D003658 ORTHO05D004457 2.8e-42 176.0 158 63.3
RcHm_v2.0_Chr7g0219181 Rosa chinensis HOM05D003658 ORTHO05D004457 4.7e-42 175.3 166 59.6
arahy.Tifrunner.gnm1.ann1.1XIG7Z Arachis hypogaea HOM05D003658 ORTHO05D004457 8.1e-42 174.5 169 60.4
Duzib213G0488 Durio zibethinus HOM05D003658 ORTHO05D004457 8.1e-42 174.5 162 61.7
Manes.04G025400 Manihot esculenta HOM05D003658 ORTHO05D004457 8.1e-42 174.5 143 66.4
arahy.Tifrunner.gnm1.ann1.SY27G3 Arachis hypogaea HOM05D003658 ORTHO05D004457 1.1e-41 174.1 169 60.4
Gohir.A01G060300 Gossypium hirsutum HOM05D003658 ORTHO05D004457 1.1e-41 174.1 152 63.8
Solyc06g075340.4 Solanum lycopersicum HOM05D003658 ORTHO05D004457 1.1e-41 174.1 95 90.5
Ca_01436_v3 Cicer arietinum L. HOM05D003658 ORTHO05D004457 1.4e-41 173.7 149 66.4
Haze_23933 Corylus avellana HOM05D003658 ORTHO05D004457 1.4e-41 173.7 149 63.1
CANSAT35G1266 Cannabis sativa HOM05D003658 ORTHO05D004457 2.4e-41 172.9 143 65.7
Ciclev10027703m.g Citrus clementina HOM05D003658 ORTHO05D004457 2.4e-41 172.9 161 61.5
MELO3C013218.2 Cucumis melo HOM05D003658 ORTHO05D004457 3.1e-41 172.6 112 76.8
PGSC0003DMG400007504 Solanum tuberosum HOM05D003658 ORTHO05D004457 3.1e-41 172.6 95 89.5
arahy.Tifrunner.gnm1.ann1.Z66RMF Arachis hypogaea HOM05D003658 ORTHO05D004457 4.0e-41 172.2 146 66.4
Gohir.D01G046800 Gossypium hirsutum HOM05D003658 ORTHO05D004457 4.0e-41 172.2 152 63.2
Gorai.002G066300 Gossypium raimondii HOM05D003658 ORTHO05D004457 4.0e-41 172.2 152 63.2
Medtr2g093280 Medicago truncatula HOM05D003658 ORTHO05D004457 4.0e-41 172.2 96 88.5
Atru.chr3.3712 Acer truncatum HOM05D003658 ORTHO05D004457 5.2e-41 171.8 106 80.2
arahy.Tifrunner.gnm1.ann1.YNZQ4S Arachis hypogaea HOM05D003658 ORTHO05D004457 5.2e-41 171.8 159 61.6
Cpa.g.sc81.16 Carica papaya HOM05D003658 ORTHO05D004457 5.2e-41 171.8 106 79.2
CiPaw.13G106400 Carya illinoinensis HOM05D003658 ORTHO05D004457 5.2e-41 171.8 106 78.3
CsaV3_7G021350 Cucumis sativus L. HOM05D003658 ORTHO05D004457 5.2e-41 171.8 102 81.4
Mapoly0126s0034 Marchantia polymorpha HOM05D003658 ORTHO05D004457 5.2e-41 171.8 95 88.4
ClCG09G021680 Citrullus lanatus HOM05D003658 ORTHO05D004457 8.9e-41 171.0 112 75.9
arahy.Tifrunner.gnm1.ann1.F0P9EH Arachis hypogaea HOM05D003658 ORTHO05D004457 1.2e-40 170.6 169 59.8
Nitab4.5_0000106g0020 Nicotiana tabacum HOM05D003658 ORTHO05D004457 1.2e-40 170.6 95 88.4
HanXRQChr09g0251621 Helianthus annuus HOM05D003658 ORTHO05D004457 2.0e-40 169.9 155 60.6
Sc12g0008310 Simmondsia chinensis HOM05D003658 ORTHO05D004457 2.0e-40 169.9 166 56.6
Sopen06g031760 Solanum pennellii HOM05D003658 ORTHO05D004457 2.0e-40 169.9 168 59.5
arahy.Tifrunner.gnm1.ann1.HT4L1Y Arachis hypogaea HOM05D003658 ORTHO05D004457 2.6e-40 169.5 146 65.8
MSTRG.22380 Avicennia marina HOM05D003658 ORTHO05D004457 2.6e-40 169.5 95 87.4
Lalb_Chr22g0350161 Lupinus albus HOM05D003658 ORTHO05D004457 2.6e-40 169.5 153 62.7
MD03G1111400 Malus domestica HOM05D003658 ORTHO05D004457 2.6e-40 169.5 167 60.5
Nitab4.5_0000816g0110 Nicotiana tabacum HOM05D003658 ORTHO05D004457 2.6e-40 169.5 95 87.4
Nitab4.5_0010960g0010 Nicotiana tabacum HOM05D003658 ORTHO05D004457 2.6e-40 169.5 95 87.4
Peaxi162Scf00072g00510 Petunia axillaris HOM05D003658 ORTHO05D004457 2.6e-40 169.5 95 87.4
Sed0011385 Sechium edule HOM05D003658 ORTHO05D004457 3.4e-40 169.1 118 72.9
THA.LOC104800615 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 3.4e-40 169.1 95 85.3
THA.LOC104826356 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 3.4e-40 169.1 174 56.3
AT1G29900 Arabidopsis thaliana HOM05D003658 ORTHO05D004457 4.4e-40 168.7 141 63.8
MSTRG.24196 Avicennia marina HOM05D003658 ORTHO05D004457 4.4e-40 168.7 97 82.5
PGR031G3879 Punica granatum HOM05D003658 ORTHO05D004457 4.4e-40 168.7 97 82.5
QL01p036935 Quercus lobata HOM05D003658 ORTHO05D004457 4.4e-40 168.7 102 78.4
Actinidia03749 Actinidia chinensis HOM05D003658 ORTHO05D004457 5.8e-40 168.3 96 86.5
Lalb_Chr14g0374811 Lupinus albus HOM05D003658 ORTHO05D004457 5.8e-40 168.3 168 57.7
Rhsim01G0220800 Rhododendron simsii HOM05D003658 ORTHO05D004457 5.8e-40 168.3 96 85.4
SGA_v2.0_scaffold19G08651 Striga asiatica HOM05D003658 ORTHO05D004457 5.8e-40 168.3 95 86.3
CAN.G1001.10 Capsicum annuum HOM05D003658 ORTHO05D004457 7.6e-40 167.9 161 60.2
Dinv32798 Davidia involucrata HOM05D003658 ORTHO05D004457 7.6e-40 167.9 181 54.7
ECA234G0865 Erigeron canadensis HOM05D003658 ORTHO05D004457 7.6e-40 167.9 151 62.9
SalBow6G4004 Salvia bowleyana HOM05D003658 ORTHO05D004457 7.6e-40 167.9 97 84.5
vmacro14471 Vaccinium macrocarpon HOM05D003658 ORTHO05D004457 7.6e-40 167.9 96 83.3
Cc10_g16400 Coffea canephora HOM05D003658 ORTHO05D004457 9.9e-40 167.5 118 72.9
Ah.05g175890 Amaranthus hybridus HOM05D003658 ORTHO05D004457 1.3e-39 167.2 109 73.4
EL10Ac1g00972 Beta vulgaris HOM05D003658 ORTHO05D004457 1.3e-39 167.2 162 58.0
Migut.N03234 Erythranthe guttata HOM05D003658 ORTHO05D004457 1.3e-39 167.2 95 85.3
Psat5g277200 Pisum sativum HOM05D003658 ORTHO05D004457 1.3e-39 167.2 147 61.9
RcHm_v2.0_Chr2g0124141 Rosa chinensis HOM05D003658 ORTHO05D004457 1.3e-39 167.2 157 63.7
CSS0000103 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 1.7e-39 166.8 95 84.2
CSS0002392 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 1.7e-39 166.8 95 84.2
CSS0031195 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 1.7e-39 166.8 95 85.3
CSS0048503 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 1.7e-39 166.8 95 85.3
Lsat_1_v5_gn_9_7920 Lactuca sativa HOM05D003658 ORTHO05D004457 1.7e-39 166.8 162 57.4
Pp3c2_19430 Physcomitrium patens HOM05D003658 ORTHO05D004457 1.7e-39 166.8 93 84.9
Sed0019661 Sechium edule HOM05D003658 ORTHO05D004457 1.7e-39 166.8 110 74.5
unitig_8.g4304 Utricularia gibba HOM05D003658 ORTHO05D004457 1.7e-39 166.8 95 85.3
Actinidia24075 Actinidia chinensis HOM05D003658 ORTHO05D004457 2.2e-39 166.4 95 85.3
AagrBONN_evm.TU.Sc2ySwM_228.578 Anthoceros agrestis HOM05D003658 ORTHO05D004457 2.2e-39 166.4 166 58.4
DCAR_016522 Daucus carota HOM05D003658 ORTHO05D004457 2.2e-39 166.4 168 59.5
TWI31G0613 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 2.2e-39 166.4 145 64.1
TWI75G0848 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 2.2e-39 166.4 149 64.4
Aa31LG4G17270 Aethionema arabicum HOM05D003658 ORTHO05D004457 2.9e-39 166.0 94 84.0
BraA09t39180Z Brassica rapa HOM05D003658 ORTHO05D004457 2.9e-39 166.0 101 80.2
CDE02G3705 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 2.9e-39 166.0 93 86.0
Sp1g25780 Schrenkiella parvula HOM05D003658 ORTHO05D004457 2.9e-39 166.0 94 84.0
TAR369G0890 Trochodendron aralioides HOM05D003658 ORTHO05D004457 2.9e-39 166.0 94 85.1
Aqoxy7G00983 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 3.8e-39 165.6 93 84.9
BcaB07g32573 Brassica carinata HOM05D003658 ORTHO05D004457 3.8e-39 165.6 101 80.2
FAN26G3193 Fragaria x ananassa HOM05D003658 ORTHO05D004457 3.8e-39 165.6 159 61.0
Pp3c1_18250 Physcomitrium patens HOM05D003658 ORTHO05D004457 3.8e-39 165.6 93 83.9
BcaC05g27003 Brassica carinata HOM05D003658 ORTHO05D004457 4.9e-39 165.2 172 58.1
C05p28660 Brassica napus HOM05D003658 ORTHO05D004457 4.9e-39 165.2 171 59.6
BolC5t31587H Brassica oleracea HOM05D003658 ORTHO05D004457 4.9e-39 165.2 172 58.1
Hund30148 Selenicereus undatus HOM05D003658 ORTHO05D004457 4.9e-39 165.2 93 83.9
Hund30149 Selenicereus undatus HOM05D003658 ORTHO05D004457 4.9e-39 165.2 93 83.9
AL1G43750 Arabidopsis lyrata HOM05D003658 ORTHO05D004457 6.4e-39 164.9 169 56.2
CDE08G0949 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 6.4e-39 164.9 93 84.9
Oeu046772.1 Olea europaea HOM05D003658 ORTHO05D004457 6.4e-39 164.9 163 57.1
Oeu047812.2 Olea europaea HOM05D003658 ORTHO05D004457 6.4e-39 164.9 95 84.2
AUR62004284 Chenopodium quinoa HOM05D003658 ORTHO05D004457 8.4e-39 164.5 158 59.5
HanXRQChr15g0493841 Helianthus annuus HOM05D003658 ORTHO05D004457 8.4e-39 164.5 96 82.3
Nn3g19734 Nelumbo nucifera HOM05D003658 ORTHO05D004457 8.4e-39 164.5 114 72.8
AUR62033373 Chenopodium quinoa HOM05D003658 ORTHO05D004457 1.1e-38 164.1 158 59.5
Thhalv10006598m.g Eutrema salsugineum HOM05D003658 ORTHO05D004457 1.1e-38 164.1 172 58.1
CARHR029540 Cardamine hirsuta HOM05D003658 ORTHO05D004457 1.9e-38 163.3 94 83.0
Nn2g10669 Nelumbo nucifera HOM05D003658 ORTHO05D004457 1.9e-38 163.3 93 83.9
TAR623G0185 Trochodendron aralioides HOM05D003658 ORTHO05D004457 1.9e-38 163.3 168 56.0
Lj4A607T48 Lonicera japonica HOM05D003658 ORTHO05D004457 2.4e-38 162.9 93 83.9
ATR0561G124 Amborella trichopoda HOM05D003658 ORTHO05D004457 3.2e-38 162.5 93 84.9
FvH4_1g25660 Fragaria vesca HOM05D003658 ORTHO05D004457 3.2e-38 162.5 161 59.6
FAN28G2851 Fragaria x ananassa HOM05D003658 ORTHO05D004457 3.2e-38 162.5 161 59.6
A09p36600 Brassica napus HOM05D003658 ORTHO05D004457 5.4e-38 161.8 168 58.9
Cfa011371 Carpinus fangiana HOM05D003658 ORTHO05D004457 5.4e-38 161.8 103 75.7
PSO782G2702 Papaver somniferum HOM05D003658 ORTHO05D004457 5.4e-38 161.8 94 80.9
Carub.0001s2812 Capsella rubella HOM05D003658 ORTHO05D004457 7.1e-38 161.4 164 56.7
MBI17_g43655_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 7.1e-38 161.4 175 56.0
SHI06033 Sapria himalayana HOM05D003658 ORTHO05D004457 1.6e-37 160.2 135 61.5
Nn2g13001 Nelumbo nucifera HOM05D003658 ORTHO05D004457 2.1e-37 159.8 156 60.9
Sabra10G0015500 Salix brachista HOM05D003658 ORTHO05D004457 3.5e-37 159.1 160 56.2
SMO116G0226 Selaginella moellendorffii HOM05D003658 ORTHO05D004457 6.0e-37 158.3 92 82.6
Potri.010G023100 Populus trichocarpa HOM05D003658 ORTHO05D004457 1.3e-36 157.1 159 54.7
CBR_g16075 Chara braunii HOM05D003658 ORTHO05D004457 1.7e-36 156.8 110 71.8
Cfa011369 Carpinus fangiana HOM05D003658 ORTHO05D004457 3.0e-36 156.0 103 73.8
Zm00001eb356970 Zea mays HOM05D003658 ORTHO05D004457 1.9e-35 153.3 100 76.0
PRCOL_00001523 Prasinoderma coloniale HOM05D003658 ORTHO05D004457 2.5e-35 152.9 94 75.5
HPP92_005503 Vanilla planifolia HOM05D003658 ORTHO05D004457 5.6e-35 151.8 161 56.5
DCAR_026092 Daucus carota HOM05D003658 ORTHO05D004457 7.3e-35 151.4 84 85.7
Eucgr.F04457 Eucalyptus grandis HOM05D003658 ORTHO05D004457 1.2e-34 150.6 84 85.7
GSVIVG01025125001 Vitis vinifera HOM05D003658 ORTHO05D004457 2.1e-34 149.8 84 84.5
Zm00001eb160030 Zea mays HOM05D003658 ORTHO05D004457 1.1e-33 147.5 160 56.2
Haze_26994 Corylus avellana HOM05D003658 ORTHO05D004457 6.9e-33 144.8 92 71.7
Cre08.g358580 Chlamydomonas reinhardtii HOM05D003658 ORTHO05D004457 9.0e-33 144.4 113 62.8
MD12G1166200 Malus domestica HOM05D003658 ORTHO05D004457 1.2e-32 144.1 89 79.8
MCO07G210 Micromonas commoda HOM05D003658 ORTHO05D004457 1.3e-31 140.6 84 77.4
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 1.2e-29 134.0 103 61.2
Cfa022738 Carpinus fangiana HOM05D003658 ORTHO05D004457 1.6e-18 97.1 89 51.7
Haze_26134 Corylus avellana HOM05D003658 ORTHO05D004457 1.1e-17 94.4 88 54.5
Nitab4.5_0010336g0040 Nicotiana tabacum HOM05D003658 ORTHO05D004457 2.2e-15 86.7 46 89.1
TPR.G11612 Trifolium pratense HOM05D003658 ORTHO05D004457 2.2e-15 86.7 117 47.9
MBI17_g19523_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 1.1e-14 84.3 97 44.3
Sc12g0005810 Simmondsia chinensis HOM05D003658 ORTHO05D004457 1.6e-13 80.5 100 41.0
Aqoxy84s009 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 7.9e-13 78.2 91 40.7
Haze_26812 Corylus avellana HOM05D003658 ORTHO05D004457 2.1e-10 70.1 92 40.2
Peaxi162Scf00809g00417 Petunia axillaris HOM05D003658 ORTHO05D004457 7.1e-06 55.1 33 75.8


User provided reference genes

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