Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G148821 Glycine max HOM05D003658 ORTHO05D004457 4.3e-104 381.3 192 100.0
Glyma.15G045100 Glycine max HOM05D003658 ORTHO05D004457 2.4e-94 349.0 190 92.1
Glyma.13G328600 Glycine max HOM05D003658 ORTHO05D004457 6.9e-94 347.4 190 91.6
Phvul.005G137400 Phaseolus vulgaris HOM05D003658 ORTHO05D004457 9.9e-93 343.6 190 90.5
VMungo1080G1458 Vigna mungo HOM05D003658 ORTHO05D004457 1.1e-91 340.1 190 89.5
Lj3g0017853 Lotus japonicus HOM05D003658 ORTHO05D004457 2.7e-90 335.5 190 87.9
Ca_01436_v3 Cicer arietinum L. HOM05D003658 ORTHO05D004457 3.9e-89 331.6 190 88.4
arahy.Tifrunner.gnm1.ann1.HT4L1Y Arachis hypogaea HOM05D003658 ORTHO05D004457 5.1e-89 331.3 190 86.8
arahy.Tifrunner.gnm1.ann1.Z66RMF Arachis hypogaea HOM05D003658 ORTHO05D004457 5.1e-89 331.3 190 86.8
Lalb_Chr24g0394441 Lupinus albus HOM05D003658 ORTHO05D004457 6.6e-89 330.9 190 86.8
Dinv32798 Davidia involucrata HOM05D003658 ORTHO05D004457 2.5e-88 328.9 190 84.7
Actinidia03749 Actinidia chinensis HOM05D003658 ORTHO05D004457 3.3e-88 328.6 190 84.7
PGR031G3879 Punica granatum HOM05D003658 ORTHO05D004457 3.3e-88 328.6 190 84.7
arahy.Tifrunner.gnm1.ann1.F0P9EH Arachis hypogaea HOM05D003658 ORTHO05D004457 4.3e-88 328.2 190 86.3
Lalb_Chr14g0374811 Lupinus albus HOM05D003658 ORTHO05D004457 4.3e-88 328.2 190 85.8
ECA234G0865 Erigeron canadensis HOM05D003658 ORTHO05D004457 5.6e-88 327.8 190 84.7
Lalb_Chr22g0350161 Lupinus albus HOM05D003658 ORTHO05D004457 5.6e-88 327.8 190 85.3
Duzib170G0243 Durio zibethinus HOM05D003658 ORTHO05D004457 7.3e-88 327.4 190 84.7
Thecc.07G099900 Theobroma cacao HOM05D003658 ORTHO05D004457 7.3e-88 327.4 190 84.7
arahy.Tifrunner.gnm1.ann1.1XIG7Z Arachis hypogaea HOM05D003658 ORTHO05D004457 9.6e-88 327.0 190 85.8
MBI17_g19523_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 9.6e-88 327.0 190 84.7
MBI17_g43655_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 9.6e-88 327.0 190 84.7
Prupe.6G093800 Prunus persica HOM05D003658 ORTHO05D004457 9.6e-88 327.0 190 84.2
ClCG09G021680 Citrullus lanatus HOM05D003658 ORTHO05D004457 1.3e-87 326.6 190 84.7
MELO3C013218.2 Cucumis melo HOM05D003658 ORTHO05D004457 1.3e-87 326.6 190 84.7
CsaV3_7G021350 Cucumis sativus L. HOM05D003658 ORTHO05D004457 1.3e-87 326.6 190 84.7
TAR623G0185 Trochodendron aralioides HOM05D003658 ORTHO05D004457 1.3e-87 326.6 190 84.7
Ciclev10027703m.g Citrus clementina HOM05D003658 ORTHO05D004457 1.6e-87 326.2 190 84.2
Cc10_g16400 Coffea canephora HOM05D003658 ORTHO05D004457 1.6e-87 326.2 190 83.7
MD03G1111400 Malus domestica HOM05D003658 ORTHO05D004457 1.6e-87 326.2 190 84.2
MD11G1125100 Malus domestica HOM05D003658 ORTHO05D004457 1.6e-87 326.2 190 84.2
arahy.Tifrunner.gnm1.ann1.YNZQ4S Arachis hypogaea HOM05D003658 ORTHO05D004457 2.1e-87 325.9 190 85.8
CSS0000103 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 2.1e-87 325.9 190 84.2
CSS0002392 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 2.1e-87 325.9 190 84.2
Hund30148 Selenicereus undatus HOM05D003658 ORTHO05D004457 2.1e-87 325.9 190 84.2
Hund30149 Selenicereus undatus HOM05D003658 ORTHO05D004457 2.1e-87 325.9 190 84.2
Oeu046772.1 Olea europaea HOM05D003658 ORTHO05D004457 2.8e-87 325.5 190 84.2
TPR.G11612 Trifolium pratense HOM05D003658 ORTHO05D004457 2.8e-87 325.5 190 86.8
MSTRG.24196 Avicennia marina HOM05D003658 ORTHO05D004457 4.8e-87 324.7 190 83.7
Peaxi162Scf00072g00510 Petunia axillaris HOM05D003658 ORTHO05D004457 4.8e-87 324.7 190 84.2
Psat5g277200 Pisum sativum HOM05D003658 ORTHO05D004457 4.8e-87 324.7 190 86.3
Ah.05g175890 Amaranthus hybridus HOM05D003658 ORTHO05D004457 6.2e-87 324.3 190 83.7
COL.COLO4_32786 Corchorus olitorius HOM05D003658 ORTHO05D004457 6.2e-87 324.3 190 83.7
Lj4A607T48 Lonicera japonica HOM05D003658 ORTHO05D004457 6.2e-87 324.3 190 83.7
arahy.Tifrunner.gnm1.ann1.SY27G3 Arachis hypogaea HOM05D003658 ORTHO05D004457 8.1e-87 323.9 190 85.3
CSS0048503 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 8.1e-87 323.9 190 83.2
Lsat_1_v5_gn_9_7920 Lactuca sativa HOM05D003658 ORTHO05D004457 8.1e-87 323.9 190 83.7
Solyc06g075340.4 Solanum lycopersicum HOM05D003658 ORTHO05D004457 8.1e-87 323.9 190 84.2
SGA_v2.0_scaffold19G08651 Striga asiatica HOM05D003658 ORTHO05D004457 8.1e-87 323.9 190 83.7
Gohir.A01G060300 Gossypium hirsutum HOM05D003658 ORTHO05D004457 1.1e-86 323.6 190 83.7
Gohir.D01G046800 Gossypium hirsutum HOM05D003658 ORTHO05D004457 1.1e-86 323.6 190 83.7
Gorai.002G066300 Gossypium raimondii HOM05D003658 ORTHO05D004457 1.1e-86 323.6 190 83.7
MSTRG.22380 Avicennia marina HOM05D003658 ORTHO05D004457 1.4e-86 323.2 190 82.6
Duzib213G0488 Durio zibethinus HOM05D003658 ORTHO05D004457 1.4e-86 323.2 190 83.7
Medtr2g093280 Medicago truncatula HOM05D003658 ORTHO05D004457 1.4e-86 323.2 190 86.3
Nn2g13001 Nelumbo nucifera HOM05D003658 ORTHO05D004457 1.4e-86 323.2 190 83.2
Nn3g19734 Nelumbo nucifera HOM05D003658 ORTHO05D004457 1.4e-86 323.2 190 83.2
Sed0019661 Sechium edule HOM05D003658 ORTHO05D004457 1.4e-86 323.2 190 84.2
Sopen06g031760 Solanum pennellii HOM05D003658 ORTHO05D004457 1.4e-86 323.2 190 84.2
ATR0561G124 Amborella trichopoda HOM05D003658 ORTHO05D004457 1.8e-86 322.8 190 83.7
Nitab4.5_0000106g0020 Nicotiana tabacum HOM05D003658 ORTHO05D004457 1.8e-86 322.8 190 83.7
Nitab4.5_0010960g0010 Nicotiana tabacum HOM05D003658 ORTHO05D004457 1.8e-86 322.8 190 83.7
CSS0031195 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 2.4e-86 322.4 190 83.2
AUR62033373 Chenopodium quinoa HOM05D003658 ORTHO05D004457 2.4e-86 322.4 190 83.2
Atru.chr3.3712 Acer truncatum HOM05D003658 ORTHO05D004457 3.1e-86 322.0 190 83.2
EL10Ac1g00972 Beta vulgaris HOM05D003658 ORTHO05D004457 3.1e-86 322.0 190 83.2
CANSAT35G1266 Cannabis sativa HOM05D003658 ORTHO05D004457 3.1e-86 322.0 190 83.7
HanXRQChr09g0251621 Helianthus annuus HOM05D003658 ORTHO05D004457 3.1e-86 322.0 190 83.2
QL01p036935 Quercus lobata HOM05D003658 ORTHO05D004457 3.1e-86 322.0 190 83.7
TAR369G0890 Trochodendron aralioides HOM05D003658 ORTHO05D004457 3.1e-86 322.0 190 82.6
Actinidia07110 Actinidia chinensis HOM05D003658 ORTHO05D004457 4.0e-86 321.6 190 83.7
Manes.04G025400 Manihot esculenta HOM05D003658 ORTHO05D004457 4.0e-86 321.6 190 83.2
AUR62004284 Chenopodium quinoa HOM05D003658 ORTHO05D004457 5.3e-86 321.2 190 82.6
Rhsim01G0220800 Rhododendron simsii HOM05D003658 ORTHO05D004457 5.3e-86 321.2 190 84.2
THA.LOC104800615 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 5.3e-86 321.2 190 83.2
vmacro14471 Vaccinium macrocarpon HOM05D003658 ORTHO05D004457 5.3e-86 321.2 190 84.2
CAN.G1001.10 Capsicum annuum HOM05D003658 ORTHO05D004457 6.9e-86 320.9 190 82.6
CARHR029540 Cardamine hirsuta HOM05D003658 ORTHO05D004457 6.9e-86 320.9 190 82.6
Migut.N03234 Erythranthe guttata HOM05D003658 ORTHO05D004457 6.9e-86 320.9 190 82.1
Nn2g10669 Nelumbo nucifera HOM05D003658 ORTHO05D004457 6.9e-86 320.9 190 82.1
TWI75G0848 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 6.9e-86 320.9 190 83.2
unitig_8.g4304 Utricularia gibba HOM05D003658 ORTHO05D004457 6.9e-86 320.9 190 83.2
AT1G29900 Arabidopsis thaliana HOM05D003658 ORTHO05D004457 9.0e-86 320.5 190 82.6
Sp1g25780 Schrenkiella parvula HOM05D003658 ORTHO05D004457 9.0e-86 320.5 190 82.6
TWI31G0613 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 9.0e-86 320.5 190 83.2
AL1G43750 Arabidopsis lyrata HOM05D003658 ORTHO05D004457 1.2e-85 320.1 190 82.6
Carub.0001s2812 Capsella rubella HOM05D003658 ORTHO05D004457 1.2e-85 320.1 190 82.6
Eucgr.F04457 Eucalyptus grandis HOM05D003658 ORTHO05D004457 1.2e-85 320.1 190 83.7
PSO782G2702 Papaver somniferum HOM05D003658 ORTHO05D004457 1.2e-85 320.1 190 83.2
PGSC0003DMG400007504 Solanum tuberosum HOM05D003658 ORTHO05D004457 1.2e-85 320.1 190 83.2
HanXRQChr15g0493841 Helianthus annuus HOM05D003658 ORTHO05D004457 1.5e-85 319.7 190 82.1
RcHm_v2.0_Chr2g0124141 Rosa chinensis HOM05D003658 ORTHO05D004457 1.5e-85 319.7 190 82.1
CDE02G3705 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 2.0e-85 319.3 190 82.6
CDE08G0949 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 2.0e-85 319.3 190 82.1
Thhalv10006598m.g Eutrema salsugineum HOM05D003658 ORTHO05D004457 2.0e-85 319.3 190 82.6
FAN28G2851 Fragaria x ananassa HOM05D003658 ORTHO05D004457 2.0e-85 319.3 190 82.6
RcHm_v2.0_Chr7g0219181 Rosa chinensis HOM05D003658 ORTHO05D004457 2.0e-85 319.3 190 82.1
FvH4_1g25660 Fragaria vesca HOM05D003658 ORTHO05D004457 2.6e-85 318.9 190 82.1
FAN26G3193 Fragaria x ananassa HOM05D003658 ORTHO05D004457 2.6e-85 318.9 190 82.1
THA.LOC104826356 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 2.6e-85 318.9 190 82.1
BcaC05g27003 Brassica carinata HOM05D003658 ORTHO05D004457 3.4e-85 318.5 190 82.1
A09p36600 Brassica napus HOM05D003658 ORTHO05D004457 3.4e-85 318.5 190 82.1
C05p28660 Brassica napus HOM05D003658 ORTHO05D004457 3.4e-85 318.5 190 82.1
BolC5t31587H Brassica oleracea HOM05D003658 ORTHO05D004457 3.4e-85 318.5 190 82.1
BraA09t39180Z Brassica rapa HOM05D003658 ORTHO05D004457 3.4e-85 318.5 190 82.1
Aa31LG4G17270 Aethionema arabicum HOM05D003658 ORTHO05D004457 4.5e-85 318.2 190 82.1
BcaB07g32573 Brassica carinata HOM05D003658 ORTHO05D004457 4.5e-85 318.2 190 81.6
CiPaw.13G106400 Carya illinoinensis HOM05D003658 ORTHO05D004457 5.8e-85 317.8 190 83.7
DCAR_026092 Daucus carota HOM05D003658 ORTHO05D004457 5.8e-85 317.8 190 81.6
Sed0011385 Sechium edule HOM05D003658 ORTHO05D004457 5.8e-85 317.8 190 82.6
Aqoxy7G00983 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 7.6e-85 317.4 190 82.6
Zm00001eb356970 Zea mays HOM05D003658 ORTHO05D004457 1.3e-84 316.6 190 82.6
Sc12g0008310 Simmondsia chinensis HOM05D003658 ORTHO05D004457 1.7e-84 316.2 190 81.1
CBR_g16075 Chara braunii HOM05D003658 ORTHO05D004457 2.9e-84 315.5 190 80.5
Haze_23933 Corylus avellana HOM05D003658 ORTHO05D004457 2.9e-84 315.5 190 81.6
DCAR_016522 Daucus carota HOM05D003658 ORTHO05D004457 3.8e-84 315.1 190 81.1
Zm00001eb160030 Zea mays HOM05D003658 ORTHO05D004457 3.8e-84 315.1 190 81.6
Zm00001eb440860 Zea mays HOM05D003658 ORTHO05D004457 3.8e-84 315.1 190 81.6
HPP92_005503 Vanilla planifolia HOM05D003658 ORTHO05D004457 6.4e-84 314.3 190 81.6
Cfa011371 Carpinus fangiana HOM05D003658 ORTHO05D004457 8.4e-84 313.9 190 81.1
SMO116G0226 Selaginella moellendorffii HOM05D003658 ORTHO05D004457 1.4e-83 313.2 190 80.0
Potri.010G023100 Populus trichocarpa HOM05D003658 ORTHO05D004457 1.9e-83 312.8 191 81.2
Sabra10G0015500 Salix brachista HOM05D003658 ORTHO05D004457 1.9e-83 312.8 191 81.2
Cfa011369 Carpinus fangiana HOM05D003658 ORTHO05D004457 5.4e-83 311.2 190 80.5
Nitab4.5_0010336g0040 Nicotiana tabacum HOM05D003658 ORTHO05D004457 7.9e-82 307.4 190 80.5
Mapoly0126s0034 Marchantia polymorpha HOM05D003658 ORTHO05D004457 3.0e-81 305.4 190 78.9
Pp3c1_18250 Physcomitrium patens HOM05D003658 ORTHO05D004457 8.7e-81 303.9 190 79.5
SHI06033 Sapria himalayana HOM05D003658 ORTHO05D004457 8.7e-81 303.9 190 76.3
Pp3c2_19430 Physcomitrium patens HOM05D003658 ORTHO05D004457 2.5e-80 302.4 190 77.9
AagrBONN_evm.TU.Sc2ySwM_228.578 Anthoceros agrestis HOM05D003658 ORTHO05D004457 6.2e-79 297.7 190 77.4
PRCOL_00001523 Prasinoderma coloniale HOM05D003658 ORTHO05D004457 1.4e-75 286.6 190 75.3
MCO07G210 Micromonas commoda HOM05D003658 ORTHO05D004457 7.1e-75 284.3 190 73.2
Cre08.g358580 Chlamydomonas reinhardtii HOM05D003658 ORTHO05D004457 2.3e-73 279.3 190 71.6
MD12G1166200 Malus domestica HOM05D003658 ORTHO05D004457 5.8e-69 264.6 163 78.5
Nitab4.5_0000816g0110 Nicotiana tabacum HOM05D003658 ORTHO05D004457 1.6e-58 229.9 190 65.3
Haze_26994 Corylus avellana HOM05D003658 ORTHO05D004457 1.4e-57 226.9 160 68.8
SalBow6G4004 Salvia bowleyana HOM05D003658 ORTHO05D004457 5.9e-53 211.5 126 79.4
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 2.9e-52 209.1 190 56.8
ATR0609G052 Amborella trichopoda HOM05D003658 ORTHO05D004457 6.3e-47 191.4 120 77.5
GSVIVG01025125001 Vitis vinifera HOM05D003658 ORTHO05D004457 8.2e-47 191.0 190 55.3
Oeu047812.2 Olea europaea HOM05D003658 ORTHO05D004457 2.4e-46 189.5 190 55.3
Cfa022738 Carpinus fangiana HOM05D003658 ORTHO05D004457 8.0e-42 174.5 190 48.4
Haze_26134 Corylus avellana HOM05D003658 ORTHO05D004457 1.8e-41 173.3 190 47.4
Dinv14502 Davidia involucrata HOM05D003658 ORTHO05D004457 4.2e-35 152.1 91 78.0
TAR633G0489 Trochodendron aralioides HOM05D003658 ORTHO05D004457 2.1e-34 149.8 107 68.2
Actinidia24075 Actinidia chinensis HOM05D003658 ORTHO05D004457 1.4e-33 147.1 156 50.6
Peaxi162Scf00809g00417 Petunia axillaris HOM05D003658 ORTHO05D004457 2.8e-31 139.4 107 70.1
Cpa.g.sc81.16 Carica papaya HOM05D003658 ORTHO05D004457 7.5e-24 114.8 191 35.6
CAN.G1001.11 Capsicum annuum HOM05D003658 ORTHO05D004457 1.7e-23 113.6 191 34.0
Sc12g0005830 Simmondsia chinensis HOM05D003658 ORTHO05D004457 4.0e-17 92.4 170 37.1
Dinv14501 Davidia involucrata HOM05D003658 ORTHO05D004457 3.1e-14 82.8 191 30.4
CAN.G916.7 Capsicum annuum HOM05D003658 ORTHO05D003835 9.2e-14 81.3 58 65.5
Lj4C607T13 Lonicera japonica HOM05D003658 ORTHO05D004457 1.9e-11 73.6 123 33.3
Aqoxy84s009 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 3.6e-10 69.3 47 70.2
Lj4C607T5 Lonicera japonica HOM05D003658 ORTHO05D004457 3.6e-10 69.3 110 34.5
Aqoxy7G00992 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 1.8e-09 67.0 145 29.7
Os01g0570700 Oryza sativa ssp. japonica HOM05D003658 ORTHO05D004457 2.6e-08 63.2 107 33.6
Nn3g17258 Nelumbo nucifera HOM05D003658 ORTHO05D004457 3.4e-08 62.8 50 60.0
CAN.G185.26 Capsicum annuum HOM05D000875 ORTHO05D000684 1.7e-07 60.5 53 54.7


User provided reference genes

Program Settings