Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G005300 Glycine max HOM05D005494 ORTHO05D006689 9.0e-84 313.5 158 100.0
Glyma.05G004700 Glycine max HOM05D005494 ORTHO05D006689 2.3e-79 298.9 156 96.2
Glyma.04G177200 Glycine max HOM05D005494 ORTHO05D006689 1.4e-73 279.6 151 90.7
VMungo0464G1007 Vigna mungo HOM05D005494 ORTHO05D006689 4.2e-73 278.1 152 90.8
Phvul.004G010600 Phaseolus vulgaris HOM05D005494 ORTHO05D006689 5.5e-73 277.7 152 89.5
Lj1g0011553 Lotus japonicus HOM05D005494 ORTHO05D006689 9.7e-70 266.9 151 86.8
Lj4g0024662 Lotus japonicus HOM05D005494 ORTHO05D006689 2.8e-69 265.4 151 86.1
Lalb_Chr08g0236101 Lupinus albus HOM05D005494 ORTHO05D006689 6.9e-68 260.8 151 82.8
arahy.Tifrunner.gnm1.ann1.Y2W2NU Arachis hypogaea HOM05D005494 ORTHO05D006689 4.5e-67 258.1 151 84.1
Ca_18065_v3 Cicer arietinum L. HOM05D005494 ORTHO05D006689 7.7e-67 257.3 150 83.3
Psat7g041440 Pisum sativum HOM05D005494 ORTHO05D006689 1.0e-66 256.9 151 84.1
Haze_07413 Corylus avellana HOM05D005494 ORTHO05D006689 1.6e-64 249.6 151 79.5
Phvul.009G054101 Phaseolus vulgaris HOM05D005494 ORTHO05D006689 7.9e-64 247.3 139 87.1
Cfa019036 Carpinus fangiana HOM05D005494 ORTHO05D006689 6.7e-63 244.2 151 77.5
Prupe.5G182300 Prunus persica HOM05D005494 ORTHO05D006689 8.8e-63 243.8 151 80.1
CiPaw.11G034500 Carya illinoinensis HOM05D005494 ORTHO05D006689 1.5e-62 243.0 151 77.5
Actinidia04945 Actinidia chinensis HOM05D005494 ORTHO05D006689 7.4e-62 240.7 150 76.7
Lalb_Chr07g0182421 Lupinus albus HOM05D005494 ORTHO05D006689 2.2e-61 239.2 150 78.7
Dinv13115 Davidia involucrata HOM05D005494 ORTHO05D006689 6.3e-61 237.7 150 76.7
Ciclev10020622m.g Citrus clementina HOM05D005494 ORTHO05D006689 1.8e-60 236.1 150 76.7
DCAR_026093 Daucus carota HOM05D005494 ORTHO05D006689 1.8e-60 236.1 150 74.7
QL10p014050 Quercus lobata HOM05D005494 ORTHO05D006689 1.8e-60 236.1 151 75.5
ClCG01G014230 Citrullus lanatus HOM05D005494 ORTHO05D006689 2.4e-60 235.7 150 76.0
CSS0010415 Camellia sinensis var. sinensis HOM05D005494 ORTHO05D006689 3.1e-60 235.3 150 75.3
CSS0047784 Camellia sinensis var. sinensis HOM05D005494 ORTHO05D006689 3.1e-60 235.3 150 75.3
FAN04G1682 Fragaria x ananassa HOM05D005494 ORTHO05D006689 4.1e-60 235.0 151 76.2
FAN13G0712 Fragaria x ananassa HOM05D005494 ORTHO05D006689 4.1e-60 235.0 151 76.2
MD14G1189700 Malus domestica HOM05D005494 ORTHO05D006689 5.3e-60 234.6 151 76.2
Sed0009281 Sechium edule HOM05D005494 ORTHO05D006689 5.3e-60 234.6 150 76.0
Thecc.10G120900 Theobroma cacao HOM05D005494 ORTHO05D006689 5.3e-60 234.6 150 76.7
GSVIVG01008098001 Vitis vinifera HOM05D005494 ORTHO05D006689 5.3e-60 234.6 150 75.3
MD06G1183600 Malus domestica HOM05D005494 ORTHO05D006689 9.1e-60 233.8 151 76.8
MD14G1057100 Malus domestica HOM05D005494 ORTHO05D006689 9.1e-60 233.8 151 76.8
vmacro19338 Vaccinium macrocarpon HOM05D005494 ORTHO05D006689 9.1e-60 233.8 150 74.0
arahy.Tifrunner.gnm1.ann1.QI1X69 Arachis hypogaea HOM05D005494 ORTHO05D006689 1.6e-59 233.0 149 79.2
CAN.G999.3 Capsicum annuum HOM05D005494 ORTHO05D006689 2.0e-59 232.6 150 74.7
Atru.chr9.2369 Acer truncatum HOM05D005494 ORTHO05D006689 3.5e-59 231.9 150 78.0
FAN18G0952 Fragaria x ananassa HOM05D005494 ORTHO05D006689 3.5e-59 231.9 151 76.2
Gohir.D12G177100 Gossypium hirsutum HOM05D005494 ORTHO05D006689 7.7e-59 230.7 151 74.8
Gorai.008G189500 Gossypium raimondii HOM05D005494 ORTHO05D006689 7.7e-59 230.7 151 74.8
TPR.G17080 Trifolium pratense HOM05D005494 ORTHO05D006689 1.0e-58 230.3 149 75.8
CsaV3_1G008090 Cucumis sativus L. HOM05D005494 ORTHO05D006689 1.3e-58 229.9 150 74.7
Manes.14G072100 Manihot esculenta HOM05D005494 ORTHO05D006689 1.3e-58 229.9 148 75.0
Potri.012G073500 Populus trichocarpa HOM05D005494 ORTHO05D006689 2.9e-58 228.8 150 74.0
Dinv07986 Davidia involucrata HOM05D005494 ORTHO05D006689 5.0e-58 228.0 150 75.3
RcHm_v2.0_Chr7g0180051 Rosa chinensis HOM05D005494 ORTHO05D006689 5.0e-58 228.0 151 74.2
Hma1.2p1_0572F.1_g181100 Hydrangea macrophylla HOM05D005494 ORTHO05D006689 6.5e-58 227.6 150 71.3
Solyc03g113610.4 Solanum lycopersicum HOM05D005494 ORTHO05D006689 6.5e-58 227.6 150 72.7
Sopen03g032650 Solanum pennellii HOM05D005494 ORTHO05D006689 6.5e-58 227.6 150 72.7
PGSC0003DMG400024571 Solanum tuberosum HOM05D005494 ORTHO05D006689 6.5e-58 227.6 150 72.7
Cc04_g16070 Coffea canephora HOM05D005494 ORTHO05D006689 8.5e-58 227.3 150 72.0
Duzib084G0032 Durio zibethinus HOM05D005494 ORTHO05D006689 8.5e-58 227.3 150 75.3
Gohir.A12G174400 Gossypium hirsutum HOM05D005494 ORTHO05D006689 1.1e-57 226.9 151 74.2
TWI09G1329 Tripterygium wilfordii HOM05D005494 ORTHO05D006689 5.5e-57 224.6 150 72.0
COL.COLO4_07634 Corchorus olitorius HOM05D005494 ORTHO05D006689 1.6e-56 223.0 150 73.3
Hund09389 Selenicereus undatus HOM05D005494 ORTHO05D006689 1.6e-56 223.0 150 70.0
CANSAT80G2452 Cannabis sativa HOM05D005494 ORTHO05D006689 6.1e-56 221.1 151 72.2
Peaxi162Scf00017g02118 Petunia axillaris HOM05D005494 ORTHO05D006689 6.1e-56 221.1 150 71.3
Eucgr.B00382 Eucalyptus grandis HOM05D005494 ORTHO05D006689 8.0e-56 220.7 150 70.7
AUR62008313 Chenopodium quinoa HOM05D005494 ORTHO05D006689 2.3e-55 219.2 152 70.4
Cpa.g.sc30.67 Carica papaya HOM05D005494 ORTHO05D006689 3.0e-55 218.8 150 70.0
Oeu038311.1 Olea europaea HOM05D005494 ORTHO05D006689 4.0e-55 218.4 151 68.2
AUR62021784 Chenopodium quinoa HOM05D005494 ORTHO05D006689 6.7e-55 217.6 152 70.4
HanXRQChr02g0045331 Helianthus annuus HOM05D005494 ORTHO05D006689 2.6e-54 215.7 150 66.7
SGA_v2.0_scaffold7G04099 Striga asiatica HOM05D005494 ORTHO05D006689 3.3e-54 215.3 151 69.5
MSTRG.9655 Avicennia marina HOM05D005494 ORTHO05D006689 4.4e-54 214.9 151 70.2
FAN08G3169 Fragaria x ananassa HOM05D005494 ORTHO05D006689 5.7e-54 214.5 137 75.9
Nitab4.5_0000642g0180 Nicotiana tabacum HOM05D005494 ORTHO05D006689 2.2e-53 212.6 137 73.7
AUR62022932 Chenopodium quinoa HOM05D005494 ORTHO05D006689 4.8e-53 211.5 150 70.0
Rhsim08G0163400 Rhododendron simsii HOM05D005494 ORTHO05D006689 1.1e-52 210.3 137 73.7
Nitab4.5_0009486g0030 Nicotiana tabacum HOM05D005494 ORTHO05D006689 1.8e-52 209.5 136 73.5
Psat7g079600 Pisum sativum HOM05D005494 ORTHO05D006689 1.8e-52 209.5 137 78.1
HanXRQChr16g0516751 Helianthus annuus HOM05D005494 ORTHO05D006689 3.1e-52 208.8 147 65.3
Nn3g17064 Nelumbo nucifera HOM05D005494 ORTHO05D006689 4.1e-52 208.4 154 68.2
AT5G11010 Arabidopsis thaliana HOM05D005494 ORTHO05D006689 9.1e-52 207.2 153 63.4
Medtr8g080140 Medicago truncatula HOM05D005494 ORTHO05D006689 1.2e-51 206.8 153 70.6
Carub.0006s0951 Capsella rubella HOM05D005494 ORTHO05D006689 2.7e-51 205.7 153 64.1
TAR629G2056 Trochodendron aralioides HOM05D005494 ORTHO05D006689 7.7e-51 204.1 142 72.5
AL6G21610 Arabidopsis lyrata HOM05D005494 ORTHO05D006689 1.3e-50 203.4 153 62.7
Sabra12G0052300 Salix brachista HOM05D005494 ORTHO05D006689 2.2e-50 202.6 154 67.5
EL10Ac5g10874 Beta vulgaris HOM05D005494 ORTHO05D006689 8.5e-50 200.7 173 59.0
Oeu038310.1 Olea europaea HOM05D005494 ORTHO05D006689 1.9e-49 199.5 150 64.0
Oeu039559.2 Olea europaea HOM05D005494 ORTHO05D006689 1.9e-49 199.5 137 68.6
Aqoxy3G03184 Aquilegia oxysepala HOM05D005494 ORTHO05D006689 4.2e-49 198.4 154 65.6
MELO3C002226.2 Cucumis melo HOM05D005494 ORTHO05D006689 7.2e-49 197.6 129 75.2
THA.LOC104814121 Tarenaya hassleriana HOM05D005494 ORTHO05D006689 7.2e-49 197.6 153 63.4
Sc12g0005890 Simmondsia chinensis HOM05D005494 ORTHO05D006689 9.4e-49 197.2 153 62.1
CARHR202280 Cardamine hirsuta HOM05D005494 ORTHO05D006689 1.6e-48 196.4 150 63.3
Aa31LG3G16120 Aethionema arabicum HOM05D005494 ORTHO05D006689 2.1e-48 196.1 153 60.1
ECA247G2071 Erigeron canadensis HOM05D005494 ORTHO05D006689 2.7e-48 195.7 146 63.0
Sp6g32480 Schrenkiella parvula HOM05D005494 ORTHO05D006689 2.7e-48 195.7 153 61.4
Lsat_1_v5_gn_1_11340 Lactuca sativa HOM05D005494 ORTHO05D006689 8.0e-48 194.1 153 59.5
THA.LOC104818279 Tarenaya hassleriana HOM05D005494 ORTHO05D006689 8.0e-48 194.1 150 62.0
Thhalv10000203m.g Eutrema salsugineum HOM05D005494 ORTHO05D006689 1.4e-47 193.4 153 61.4
Medtr8g080150 Medicago truncatula HOM05D005494 ORTHO05D006689 2.3e-47 192.6 138 71.7
TAR622G0530 Trochodendron aralioides HOM05D005494 ORTHO05D006689 3.0e-47 192.2 141 68.8
Migut.N01938 Erythranthe guttata HOM05D005494 ORTHO05D006689 8.8e-47 190.7 150 65.3
PSO591G0251 Papaver somniferum HOM05D005494 ORTHO05D006689 1.2e-46 190.3 152 60.5
PSO832G2211 Papaver somniferum HOM05D005494 ORTHO05D006689 2.8e-45 185.7 154 59.1
unitig_8.g3614 Utricularia gibba HOM05D005494 ORTHO05D006689 8.3e-45 184.1 150 60.7
HPP92_008786 Vanilla planifolia HOM05D005494 ORTHO05D006689 4.1e-44 181.8 154 59.7
ATR0051G026 Amborella trichopoda HOM05D004526 ORTHO05D005548 1.6e-43 179.9 137 66.4
Zm00001eb121920 Zea mays HOM05D005494 ORTHO05D006689 2.7e-43 179.1 152 57.9
Os01g0184000 Oryza sativa ssp. japonica HOM05D005494 ORTHO05D006689 8.5e-42 174.1 153 54.9
SEGI_00948 Sequoiadendron giganteum HOM05D005494 ORTHO05D006689 1.1e-41 173.7 154 55.8
Migut.D01889 Erythranthe guttata HOM05D005494 ORTHO05D006689 1.5e-41 173.3 151 59.6
BcaC04g19267 Brassica carinata HOM05D005494 ORTHO05D006689 3.2e-41 172.2 148 58.1
A10p26670 Brassica napus HOM05D005494 ORTHO05D006689 9.5e-41 170.6 148 57.4
C09p65840 Brassica napus HOM05D005494 ORTHO05D006689 9.5e-41 170.6 148 57.4
BolC9t59405H Brassica oleracea HOM05D005494 ORTHO05D006689 9.5e-41 170.6 148 57.4
Duzib205G0238 Durio zibethinus HOM05D005494 ORTHO05D006689 1.8e-39 166.4 139 62.6
CDE02G1640 Ceratophyllum demersum HOM05D005494 ORTHO05D006689 4.4e-38 161.8 143 60.8
SHI07761 Sapria himalayana HOM05D005494 ORTHO05D006689 4.4e-38 161.8 136 60.3
GSVIVG01008100001 Vitis vinifera HOM05D005494 ORTHO05D006689 2.2e-37 159.5 99 78.8
Sc12g0005880 Simmondsia chinensis HOM05D005494 ORTHO05D006689 2.8e-37 159.1 125 62.4
FvH4_5g16020 Fragaria vesca HOM05D005494 ORTHO05D006689 6.3e-37 157.9 94 79.8
AUR62012293 Chenopodium quinoa HOM05D005494 ORTHO05D006689 5.6e-33 144.8 130 59.2
Lsat_1_v5_gn_5_17360 Lactuca sativa HOM05D005494 ORTHO05D006689 5.6e-33 144.8 153 47.7
Lj5C118G23 Lonicera japonica HOM05D005494 ORTHO05D006689 5.6e-33 144.8 94 72.3
VMungo1309G1734 Vigna mungo HOM05D005494 ORTHO05D006689 3.4e-30 135.6 89 78.7
Aa31LG10G14040 Aethionema arabicum HOM05D005494 ORTHO05D006689 2.4e-28 129.4 127 50.4
Mapoly0002s0051 Marchantia polymorpha HOM05D005494 ORTHO05D006689 2.4e-28 129.4 154 44.2
Pp3c4_400 Physcomitrium patens HOM05D005494 ORTHO05D006689 9.2e-28 127.5 157 41.4
HPP92_006463 Vanilla planifolia HOM05D005494 ORTHO05D006689 3.6e-24 115.5 138 41.3
Os01g0354700 Oryza sativa ssp. japonica HOM05D005494 ORTHO05D006689 1.2e-19 100.5 141 33.3
MBI06_g04707_MAGBIO Magnolia biondii HOM05D002360 ORTHO05D006689 2.5e-17 92.8 72 66.7
Thhalv10015920m.g Eutrema salsugineum HOM05D005494 ORTHO05D006689 1.1e-15 87.4 75 57.3
Lj5A118T79 Lonicera japonica HOM05D005494 ORTHO05D006689 1.6e-08 63.5 44 68.2
PRCOL_00002205 Prasinoderma coloniale HOM05D005494 ORTHO05D006689 2.8e-08 62.8 126 31.7


User provided reference genes

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