Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G257500 Glycine max HOM05D003441 ORTHO05D046774 2.5e-59 231.9 114 100.0
AUR62022736 Chenopodium quinoa HOM05D003441 ORTHO05D004516 2.4e-38 162.2 101 78.2
Glyma.05G209700 Glycine max HOM05D003441 ORTHO05D004516 2.4e-38 162.2 142 62.7
Glyma.08G016400 Glycine max HOM05D003441 ORTHO05D004516 1.6e-37 159.5 142 62.0
Ca_10937_v3 Cicer arietinum L. HOM05D003441 ORTHO05D004516 7.8e-37 157.1 139 61.2
Phvul.002G291500 Phaseolus vulgaris HOM05D003441 ORTHO05D004516 7.8e-37 157.1 139 61.2
VMungo0251G2080 Vigna mungo HOM05D003441 ORTHO05D004516 7.8e-37 157.1 139 61.2
arahy.Tifrunner.gnm1.ann1.5RI6ER Arachis hypogaea HOM05D003441 ORTHO05D004516 1.0e-36 156.8 139 60.4
arahy.Tifrunner.gnm1.ann1.75Q964 Arachis hypogaea HOM05D003441 ORTHO05D004516 1.0e-36 156.8 139 60.4
Lalb_Chr05g0224631 Lupinus albus HOM05D003441 ORTHO05D004516 1.0e-36 156.8 139 60.4
Lalb_Chr16g0390181 Lupinus albus HOM05D003441 ORTHO05D004516 1.0e-36 156.8 139 60.4
Medtr8g098675 Medicago truncatula HOM05D003441 ORTHO05D004516 1.0e-36 156.8 139 60.4
TPR.G12826 Trifolium pratense HOM05D003441 ORTHO05D004516 1.0e-36 156.8 139 60.4
Psat7g031680 Pisum sativum HOM05D003441 ORTHO05D004516 3.9e-36 154.8 139 59.7
EL10Ac5g12531 Beta vulgaris HOM05D003441 ORTHO05D004516 5.1e-36 154.5 139 60.4
AUR62010445 Chenopodium quinoa HOM05D003441 ORTHO05D004516 5.1e-36 154.5 139 60.4
AUR62030470 Chenopodium quinoa HOM05D003441 ORTHO05D004516 5.1e-36 154.5 139 60.4
Thecc.03G282800 Theobroma cacao HOM05D003441 ORTHO05D004516 5.1e-36 154.5 139 60.4
Lj4g0015025 Lotus japonicus HOM05D003441 ORTHO05D004516 8.6e-36 153.7 139 59.0
Aa31LG5G13590 Aethionema arabicum HOM05D003441 ORTHO05D004516 1.1e-35 153.3 139 59.0
AL7G48050 Arabidopsis lyrata HOM05D003441 ORTHO05D004516 1.1e-35 153.3 139 59.0
AL7G48070 Arabidopsis lyrata HOM05D003441 ORTHO05D004516 1.1e-35 153.3 139 59.0
AT5G41370 Arabidopsis thaliana HOM05D003441 ORTHO05D004516 1.1e-35 153.3 139 59.0
Carub.0007s3411 Capsella rubella HOM05D003441 ORTHO05D004516 1.1e-35 153.3 139 59.0
CARHR212960 Cardamine hirsuta HOM05D003441 ORTHO05D004516 1.1e-35 153.3 139 59.0
Duzib205G0291 Durio zibethinus HOM05D003441 ORTHO05D004516 1.1e-35 153.3 139 60.4
Haze_08814 Corylus avellana HOM05D003441 ORTHO05D004516 1.5e-35 152.9 134 61.2
Duzib084G0223 Durio zibethinus HOM05D003441 ORTHO05D004516 1.5e-35 152.9 139 59.7
Thhalv10027651m.g Eutrema salsugineum HOM05D003441 ORTHO05D004516 1.5e-35 152.9 139 59.0
THA.LOC104817891 Tarenaya hassleriana HOM05D003441 ORTHO05D004516 1.5e-35 152.9 139 59.0
BcaB06g27616 Brassica carinata HOM05D003441 ORTHO05D004516 1.9e-35 152.5 139 58.3
BcaC02g08964 Brassica carinata HOM05D003441 ORTHO05D004516 1.9e-35 152.5 139 58.3
BcaC08g44524 Brassica carinata HOM05D003441 ORTHO05D004516 1.9e-35 152.5 139 58.3
A04p14500 Brassica napus HOM05D003441 ORTHO05D004516 1.9e-35 152.5 139 58.3
A07p20760 Brassica napus HOM05D003441 ORTHO05D004516 1.9e-35 152.5 139 58.3
C04p48400 Brassica napus HOM05D003441 ORTHO05D004516 1.9e-35 152.5 139 58.3
BolC4t26434H Brassica oleracea HOM05D003441 ORTHO05D004516 1.9e-35 152.5 139 58.3
BraA04t17095Z Brassica rapa HOM05D003441 ORTHO05D004516 1.9e-35 152.5 139 58.3
BraA07t29768Z Brassica rapa HOM05D003441 ORTHO05D004516 1.9e-35 152.5 139 58.3
Gohir.D03G149600 Gossypium hirsutum HOM05D003441 ORTHO05D004516 1.9e-35 152.5 139 59.7
Sp7g00580 Schrenkiella parvula HOM05D003441 ORTHO05D004516 1.9e-35 152.5 139 58.3
SpUn0010_0060 Schrenkiella parvula HOM05D003441 ORTHO05D004516 1.9e-35 152.5 139 58.3
TWI81G0502 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 1.9e-35 152.5 139 59.0
CANSAT25G0732 Cannabis sativa HOM05D003441 ORTHO05D004516 3.3e-35 151.8 139 59.0
CARHR183180 Cardamine hirsuta HOM05D003441 ORTHO05D004516 3.3e-35 151.8 127 62.2
Cpa.g.sc180.13 Carica papaya HOM05D003441 ORTHO05D004516 3.3e-35 151.8 139 59.0
Ah.12g058870 Amaranthus hybridus HOM05D003441 ORTHO05D004516 5.6e-35 151.0 80 90.0
Cfa012202 Carpinus fangiana HOM05D003441 ORTHO05D004516 5.6e-35 151.0 80 91.2
FvH4_5g02840 Fragaria vesca HOM05D003441 ORTHO05D004516 5.6e-35 151.0 80 90.0
FAN04G2979 Fragaria x ananassa HOM05D003441 ORTHO05D004516 5.6e-35 151.0 80 90.0
FAN08G0848 Fragaria x ananassa HOM05D003441 ORTHO05D004516 5.6e-35 151.0 80 90.0
FAN13G0786 Fragaria x ananassa HOM05D003441 ORTHO05D004516 5.6e-35 151.0 80 90.0
FAN18G3267 Fragaria x ananassa HOM05D003441 ORTHO05D004516 5.6e-35 151.0 80 90.0
HanXRQChr06g0165951 Helianthus annuus HOM05D003441 ORTHO05D004516 5.6e-35 151.0 139 57.6
Lj8A218G25 Lonicera japonica HOM05D003441 ORTHO05D004516 5.6e-35 151.0 80 90.0
QL12p032410 Quercus lobata HOM05D003441 ORTHO05D004516 5.6e-35 151.0 139 58.3
TWI15G1061 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 5.6e-35 151.0 139 58.3
TWI15G1203 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 5.6e-35 151.0 139 58.3
AT5G41360 Arabidopsis thaliana HOM05D003441 ORTHO05D004516 7.3e-35 150.6 139 58.3
ECA246G2088 Erigeron canadensis HOM05D003441 ORTHO05D004516 7.3e-35 150.6 80 88.8
Atru.chr9.2153 Acer truncatum HOM05D003441 ORTHO05D004516 9.5e-35 150.2 139 58.3
Ciclev10019088m.g Citrus clementina HOM05D003441 ORTHO05D004516 9.5e-35 150.2 139 59.0
Cc08_g15010 Coffea canephora HOM05D003441 ORTHO05D004516 9.5e-35 150.2 80 90.0
Eucgr.E00638 Eucalyptus grandis HOM05D003441 ORTHO05D004516 9.5e-35 150.2 80 90.0
Gohir.A11G022800 Gossypium hirsutum HOM05D003441 ORTHO05D004516 9.5e-35 150.2 139 58.3
Gorai.007G023800 Gossypium raimondii HOM05D003441 ORTHO05D004516 9.5e-35 150.2 139 58.3
Prupe.5G104000 Prunus persica HOM05D003441 ORTHO05D004516 9.5e-35 150.2 142 57.0
CiPaw.12G091100 Carya illinoinensis HOM05D003441 ORTHO05D004516 1.2e-34 149.8 139 59.0
Peaxi162Scf00074g02032 Petunia axillaris HOM05D003441 ORTHO05D004516 1.2e-34 149.8 80 90.0
PGR042G0359 Punica granatum HOM05D003441 ORTHO05D004516 1.2e-34 149.8 80 88.8
RcHm_v2.0_Chr7g0197061 Rosa chinensis HOM05D003441 ORTHO05D004516 1.2e-34 149.8 80 88.8
Solyc08g081340.4 Solanum lycopersicum HOM05D003441 ORTHO05D004516 1.2e-34 149.8 80 90.0
Sopen08g029660 Solanum pennellii HOM05D003441 ORTHO05D004516 1.2e-34 149.8 80 90.0
ClCG01G002520 Citrullus lanatus HOM05D003441 ORTHO05D004516 1.6e-34 149.4 80 87.5
COL.COLO4_34498 Corchorus olitorius HOM05D003441 ORTHO05D004516 1.6e-34 149.4 139 57.6
MELO3C005694.2 Cucumis melo HOM05D003441 ORTHO05D004516 1.6e-34 149.4 80 87.5
CsaV3_5G002620 Cucumis sativus L. HOM05D003441 ORTHO05D004516 1.6e-34 149.4 80 87.5
Manes.02G021700 Manihot esculenta HOM05D003441 ORTHO05D004516 1.6e-34 149.4 80 90.0
Nitab4.5_0001220g0100 Nicotiana tabacum HOM05D003441 ORTHO05D004516 1.6e-34 149.4 80 88.8
Nitab4.5_0001522g0040 Nicotiana tabacum HOM05D003441 ORTHO05D004516 1.6e-34 149.4 80 88.8
Nitab4.5_0004114g0020 Nicotiana tabacum HOM05D003441 ORTHO05D004516 1.6e-34 149.4 80 88.8
GSVIVG01019392001 Vitis vinifera HOM05D003441 ORTHO05D004516 1.6e-34 149.4 80 90.0
Carub.0007s3412 Capsella rubella HOM05D003441 ORTHO05D004516 2.1e-34 149.1 139 57.6
CAN.G532.8 Capsicum annuum HOM05D003441 ORTHO05D004516 2.1e-34 149.1 80 90.0
FAN01G0379 Fragaria x ananassa HOM05D003441 ORTHO05D004516 2.1e-34 149.1 121 63.6
HanXRQChr17g0533461 Helianthus annuus HOM05D003441 ORTHO05D004516 2.1e-34 149.1 80 87.5
Migut.E01191 Erythranthe guttata HOM05D003441 ORTHO05D004516 2.8e-34 148.7 80 88.8
RcHm_v2.0_Chr1g0341861 Rosa chinensis HOM05D003441 ORTHO05D004516 2.8e-34 148.7 80 88.8
Sed0019074 Sechium edule HOM05D003441 ORTHO05D004516 2.8e-34 148.7 80 87.5
Hund10975 Selenicereus undatus HOM05D003441 ORTHO05D004516 2.8e-34 148.7 80 88.8
Sc07g0009820 Simmondsia chinensis HOM05D003441 ORTHO05D004516 2.8e-34 148.7 80 88.8
BolC6t37164H Brassica oleracea HOM05D003441 ORTHO05D004516 3.6e-34 148.3 139 56.8
Lj2C182G1 Lonicera japonica HOM05D003441 ORTHO05D004516 3.6e-34 148.3 80 87.5
MD06G1087900 Malus domestica HOM05D003441 ORTHO05D004516 3.6e-34 148.3 80 88.8
MSTRG.11971 Avicennia marina HOM05D003441 ORTHO05D004516 4.7e-34 147.9 80 88.8
SalBow1G4213 Salvia bowleyana HOM05D003441 ORTHO05D004516 4.7e-34 147.9 80 88.8
PGSC0003DMG400012332 Solanum tuberosum HOM05D003441 ORTHO05D004516 4.7e-34 147.9 80 88.8
Actinidia28364 Actinidia chinensis HOM05D003441 ORTHO05D004516 6.2e-34 147.5 80 87.5
BcaB02g07896 Brassica carinata HOM05D003441 ORTHO05D004516 6.2e-34 147.5 139 57.6
Gohir.A01G154260 Gossypium hirsutum HOM05D003441 ORTHO05D046774 6.2e-34 147.5 80 88.8
unitig_62.g23537 Utricularia gibba HOM05D003441 ORTHO05D004516 8.1e-34 147.1 80 87.5
CSS0029160 Camellia sinensis var. sinensis HOM05D003441 ORTHO05D004516 1.1e-33 146.7 80 87.5
CSS0043381 Camellia sinensis var. sinensis HOM05D003441 ORTHO05D004516 1.1e-33 146.7 80 87.5
Lsat_1_v5_gn_3_6121 Lactuca sativa HOM05D003441 ORTHO05D004516 2.3e-33 145.6 80 86.2
Dinv37619 Davidia involucrata HOM05D003441 ORTHO05D004516 3.1e-33 145.2 80 86.2
FvH4_7g08220 Fragaria vesca HOM05D003441 ORTHO05D004516 3.1e-33 145.2 78 88.5
FAN06G0185 Fragaria x ananassa HOM05D003441 ORTHO05D004516 3.1e-33 145.2 78 88.5
SGA_v2.0_scaffold144G35916 Striga asiatica HOM05D003441 ORTHO05D004516 6.8e-33 144.1 80 87.5
ATR0661G194 Amborella trichopoda HOM05D003441 ORTHO05D004516 8.9e-33 143.7 80 85.0
PSO478G5020 Papaver somniferum HOM05D003441 ORTHO05D004516 2.0e-32 142.5 80 85.0
TAR636G0201 Trochodendron aralioides HOM05D003441 ORTHO05D004516 3.4e-32 141.7 80 86.2
MBI04_g41820_MAGBIO Magnolia biondii HOM05D003441 ORTHO05D004516 4.4e-32 141.4 80 86.2
Potri.001G101300 Populus trichocarpa HOM05D003441 ORTHO05D004516 4.4e-32 141.4 139 55.4
Sabra01G0076300 Salix brachista HOM05D003441 ORTHO05D004516 4.4e-32 141.4 139 55.4
Aqoxy1G00680 Aquilegia oxysepala HOM05D003441 ORTHO05D004516 5.8e-32 141.0 80 85.0
DCAR_005566 Daucus carota HOM05D003441 ORTHO05D004516 7.6e-32 140.6 80 83.8
Nn6g33339 Nelumbo nucifera HOM05D003441 ORTHO05D004516 7.6e-32 140.6 80 85.0
SEGI_31025 Sequoiadendron giganteum HOM05D003441 ORTHO05D004516 7.6e-32 140.6 80 85.0
Oeu030097.4 Olea europaea HOM05D003441 ORTHO05D004516 9.9e-32 140.2 80 82.5
Rhsim02G0234100 Rhododendron simsii HOM05D003441 ORTHO05D004516 1.3e-31 139.8 80 83.8
Gohir.D11G022366 Gossypium hirsutum HOM05D003441 ORTHO05D004516 1.7e-31 139.4 134 56.0
HPP92_021979 Vanilla planifolia HOM05D003441 ORTHO05D004516 1.7e-31 139.4 80 85.0
HPP92_022012 Vanilla planifolia HOM05D003441 ORTHO05D004516 1.7e-31 139.4 80 85.0
Gorai.003G156900 Gossypium raimondii HOM05D003441 ORTHO05D004516 3.8e-31 138.3 165 50.3
Os01g0691600 Oryza sativa ssp. japonica HOM05D003441 ORTHO05D004516 4.9e-31 137.9 80 82.5
FAN06G2516 Fragaria x ananassa HOM05D003441 ORTHO05D004516 8.4e-31 137.1 80 83.8
FAN10G3500 Fragaria x ananassa HOM05D003441 ORTHO05D004516 8.4e-31 137.1 80 83.8
CDE12G0607 Ceratophyllum demersum HOM05D003441 ORTHO05D004516 1.1e-30 136.7 80 82.5
SHI07185 Sapria himalayana HOM05D000105 ORTHO05D000023 1.9e-30 136.0 79 81.0
Nitab4.5_0002290g0010 Nicotiana tabacum HOM05D003441 ORTHO05D004516 2.4e-30 135.6 80 81.2
Nitab4.5_0004008g0010 Nicotiana tabacum HOM05D003441 ORTHO05D004516 2.4e-30 135.6 80 81.2
Aqoxy5G02024 Aquilegia oxysepala HOM05D003441 ORTHO05D004516 3.2e-30 135.2 139 54.0
ECA246G1863 Erigeron canadensis HOM05D003441 ORTHO05D004516 3.2e-30 135.2 148 50.7
FvH4_7g07850 Fragaria vesca HOM05D003441 ORTHO05D004516 3.2e-30 135.2 78 84.6
FAN03G2549 Fragaria x ananassa HOM05D003441 ORTHO05D004516 4.1e-30 134.8 80 82.5
Gohir.A03G019400 Gossypium hirsutum HOM05D003441 ORTHO05D004516 4.1e-30 134.8 174 47.7
Zm00001eb156220 Zea mays HOM05D003441 ORTHO05D004516 5.4e-30 134.4 80 80.0
PGSC0003DMG400026783 Solanum tuberosum HOM05D003441 ORTHO05D004516 1.2e-29 133.3 80 77.5
Lsat_1_v5_gn_2_120581 Lactuca sativa HOM05D003441 ORTHO05D004516 2.7e-29 132.1 138 51.4
SMO347G0324 Selaginella moellendorffii HOM05D003441 ORTHO05D004516 2.7e-29 132.1 80 78.8
Lsat_1_v5_gn_2_120601 Lactuca sativa HOM05D003441 ORTHO05D004516 3.5e-29 131.7 80 78.8
AagrBONN_evm.TU.Sc2ySwM_368.2338 Anthoceros agrestis HOM05D003441 ORTHO05D004516 4.6e-29 131.3 80 78.8
SMO115G0252 Selaginella moellendorffii HOM05D003441 ORTHO05D004516 4.6e-29 131.3 80 78.8
RcHm_v2.0_Chr1g0341621 Rosa chinensis HOM05D003441 ORTHO05D004516 6.0e-29 131.0 86 77.9
PSO017G3334 Papaver somniferum HOM05D003441 ORTHO05D004516 1.3e-28 129.8 80 78.8
PSO421G0274 Papaver somniferum HOM05D003441 ORTHO05D004516 1.3e-28 129.8 80 78.8
CBR_g34305 Chara braunii HOM05D003441 ORTHO05D004516 3.0e-28 128.6 80 77.5
Pp3c6_13890 Physcomitrium patens HOM05D003441 ORTHO05D004516 3.9e-28 128.3 80 77.5
Mapoly0037s0100 Marchantia polymorpha HOM05D003441 ORTHO05D004516 7.3e-27 124.0 80 73.8
Cre06.g297016 Chlamydomonas reinhardtii HOM05D003441 ORTHO05D004516 1.2e-26 123.2 80 70.0
RcHm_v2.0_Chr7g0203931 Rosa chinensis HOM05D003441 ORTHO05D004516 6.2e-26 120.9 81 69.1
FAN08G2634 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.4e-25 119.8 81 69.1
FvH4_5g19420 Fragaria vesca HOM05D003441 ORTHO05D004516 1.2e-24 116.7 81 67.9
FAN13G0171 Fragaria x ananassa HOM05D003441 ORTHO05D004516 4.4e-24 114.8 81 66.7
FAN04G2533 Fragaria x ananassa HOM05D003441 ORTHO05D004516 5.8e-24 114.4 81 66.7
MCO01G486 Micromonas commoda HOM05D003441 ORTHO05D004516 5.8e-24 114.4 80 63.8
PRCOL_00001151 Prasinoderma coloniale HOM05D003441 ORTHO05D004516 5.8e-24 114.4 80 65.0
Haze_26458 Corylus avellana HOM05D003441 ORTHO05D004516 5.1e-20 101.3 78 60.3
AUR62004519 Chenopodium quinoa HOM05D003441 ORTHO05D004516 6.9e-17 90.9 55 76.4
Cfa023957 Carpinus fangiana HOM05D003441 ORTHO05D004516 1.3e-15 86.7 77 53.2


User provided reference genes

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