Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 1.8e-156 555.8 275 100.0
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 7.1e-153 543.9 273 97.8
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 9.0e-148 526.9 273 95.2
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 3.4e-147 525.0 267 96.3
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 6.1e-144 514.2 270 91.9
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 2.3e-143 512.3 273 91.9
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 3.9e-143 511.5 273 91.2
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 5.1e-143 511.1 273 90.5
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 5.1e-143 511.1 273 91.6
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 5.1e-143 511.1 273 89.4
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 8.8e-143 510.4 273 90.5
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 8.8e-143 510.4 270 90.0
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 1.1e-142 510.0 273 90.5
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 1.1e-142 510.0 273 90.8
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 1.1e-142 510.0 273 90.8
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 1.5e-142 509.6 270 90.7
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 2.0e-142 509.2 273 90.5
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 3.3e-142 508.4 270 90.7
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 4.3e-142 508.1 273 90.1
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 5.7e-142 507.7 273 89.4
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 7.4e-142 507.3 270 90.7
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 1.7e-141 506.1 266 91.4
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 2.2e-141 505.8 273 88.6
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 2.2e-141 505.8 273 89.7
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 2.2e-141 505.8 273 89.7
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 2.8e-141 505.4 270 90.4
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 4.8e-141 504.6 270 89.3
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 4.8e-141 504.6 270 90.7
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 4.8e-141 504.6 273 90.1
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 4.8e-141 504.6 273 90.8
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 1.8e-140 502.7 270 88.1
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 1.8e-140 502.7 270 91.5
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 2.4e-140 502.3 273 88.3
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 2.4e-140 502.3 273 89.0
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 2.4e-140 502.3 270 89.6
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 3.1e-140 501.9 266 89.8
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 4.1e-140 501.5 270 88.5
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 4.1e-140 501.5 270 89.3
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 4.1e-140 501.5 266 89.8
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 5.3e-140 501.1 266 89.8
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 6.9e-140 500.7 270 88.9
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 9.1e-140 500.4 270 88.5
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 1.2e-139 500.0 270 89.3
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 1.5e-139 499.6 273 87.9
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 2.0e-139 499.2 270 88.5
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 3.4e-139 498.4 270 88.5
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 3.4e-139 498.4 273 87.5
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 3.4e-139 498.4 270 89.3
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 4.5e-139 498.0 266 89.5
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 4.5e-139 498.0 273 87.5
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 5.9e-139 497.7 270 88.1
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 7.7e-139 497.3 273 87.5
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 7.7e-139 497.3 266 88.7
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 7.7e-139 497.3 270 88.1
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 7.7e-139 497.3 270 88.1
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 7.7e-139 497.3 269 88.1
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 1.3e-138 496.5 269 88.5
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 1.3e-138 496.5 270 88.1
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.3e-138 496.5 270 88.1
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 1.7e-138 496.1 266 89.1
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 1.7e-138 496.1 270 88.1
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 1.7e-138 496.1 270 88.5
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 2.2e-138 495.7 270 88.5
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 2.9e-138 495.4 269 88.1
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 5.0e-138 494.6 277 86.6
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 6.5e-138 494.2 269 88.1
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 6.5e-138 494.2 278 86.3
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 8.5e-138 493.8 273 86.8
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 1.1e-137 493.4 273 86.4
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.1e-137 493.4 270 87.8
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 1.1e-137 493.4 270 86.7
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 1.9e-137 492.7 270 87.4
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 1.9e-137 492.7 270 87.4
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 1.9e-137 492.7 294 83.0
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 2.5e-137 492.3 270 87.4
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 4.2e-137 491.5 269 88.1
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 5.5e-137 491.1 273 86.4
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 7.2e-137 490.7 270 88.1
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 1.6e-136 489.6 273 85.0
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 2.1e-136 489.2 273 85.0
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 3.6e-136 488.4 267 88.4
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 4.7e-136 488.0 273 86.1
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 4.7e-136 488.0 273 86.1
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 4.7e-136 488.0 270 87.0
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 4.7e-136 488.0 270 86.7
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 6.1e-136 487.6 270 87.8
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 7.9e-136 487.3 270 85.6
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 7.9e-136 487.3 269 87.0
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 7.9e-136 487.3 269 87.0
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.8e-135 486.1 303 78.5
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 2.3e-135 485.7 273 86.8
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 2.3e-135 485.7 269 86.6
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 5.1e-135 484.6 277 86.3
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 6.7e-135 484.2 270 85.6
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 6.7e-135 484.2 270 84.8
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 6.7e-135 484.2 267 87.3
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.1e-134 483.4 270 84.8
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.1e-134 483.4 270 84.8
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 1.1e-134 483.4 270 85.9
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 1.1e-134 483.4 270 85.2
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 2.6e-134 482.3 266 88.0
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 7.4e-134 480.7 270 84.1
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 7.4e-134 480.7 259 88.0
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 1.3e-133 479.9 273 86.1
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 2.2e-133 479.2 266 87.6
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 2.2e-133 479.2 266 87.6
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 4.8e-133 478.0 266 87.2
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 6.3e-133 477.6 266 86.8
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 1.1e-132 476.9 259 88.4
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 4.1e-132 474.9 271 85.6
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 7.0e-132 474.2 272 84.2
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 7.0e-132 474.2 270 85.2
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 9.1e-132 473.8 266 87.6
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 4.2e-129 464.9 347 68.6
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 2.7e-128 462.2 273 81.7
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 1.8e-127 459.5 257 86.4
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 2.3e-127 459.1 270 84.1
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 5.2e-127 458.0 268 84.7
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 6.7e-127 457.6 257 86.0
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 1.1e-126 456.8 245 90.6
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.5e-126 456.4 277 81.9
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.5e-126 456.4 277 81.9
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 2.8e-125 452.2 324 70.4
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 2.8e-125 452.2 296 75.7
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 3.1e-124 448.7 278 79.5
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 9.1e-124 447.2 238 89.5
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 1.3e-122 443.4 238 89.5
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 2.5e-121 439.1 239 88.7
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 9.4e-121 437.2 265 78.1
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 1.2e-120 436.8 253 81.4
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 6.1e-120 434.5 240 88.3
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 2.3e-119 432.6 266 76.3
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 5.2e-119 431.4 299 74.2
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 3.7e-117 425.2 269 78.4
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 1.8e-116 422.9 269 78.4
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 5.7e-110 401.4 273 74.0
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 1.3e-109 400.2 270 74.8
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 8.6e-106 387.5 264 71.6
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 4.7e-104 381.7 378 56.6
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 1.0e-103 380.6 201 91.0
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 1.3e-98 363.6 395 53.9
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 2.3e-98 362.8 275 69.1
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 2.1e-96 356.3 198 86.9
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 1.3e-90 337.0 173 91.9
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 8.6e-90 334.3 175 88.6
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 1.5e-89 333.6 272 66.2
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 4.6e-83 312.0 270 60.4
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 1.2e-78 297.4 234 67.9
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 6.2e-72 275.0 194 73.7
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-69 267.3 153 80.4
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 1.2e-67 260.8 256 49.6
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 4.9e-53 212.2 130 81.5
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 4.9e-53 212.2 130 81.5
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 2.1e-51 206.8 194 60.3
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 3.4e-38 162.9 141 63.1
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 9.0e-31 138.3 129 61.2
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 1.1e-23 114.8 66 75.8
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 4.1e-23 112.8 80 67.5
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 5.3e-23 112.5 64 75.0
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 1.3e-21 107.8 83 67.5
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 1.3e-21 107.8 83 67.5
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 1.4e-20 104.4 64 76.6
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 2.0e-14 84.0 46 89.1
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 2.5e-12 77.0 45 77.8
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 7.2e-12 75.5 90 53.3
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 7.2e-12 75.5 90 53.3
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.7e-08 64.3 39 82.1
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 3.7e-08 63.2 33 78.8
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 7.7e-06 55.5 34 76.5


User provided reference genes

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