Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G227900 Glycine max HOM05D006490 ORTHO05D008301 4.2e-159 564.7 292 100.0
Glyma.09G264100 Glycine max HOM05D006490 ORTHO05D008301 1.2e-145 520.0 342 82.2
Phvul.008G070300 Phaseolus vulgaris HOM05D006490 ORTHO05D008301 1.3e-139 500.0 343 79.6
VMungo1383G1476 Vigna mungo HOM05D006490 ORTHO05D008301 1.7e-136 489.6 343 78.1
Ca_07866_v3 Cicer arietinum L. HOM05D006490 ORTHO05D008301 3.0e-117 425.6 349 69.1
arahy.Tifrunner.gnm1.ann1.M2DA0A Arachis hypogaea HOM05D006490 ORTHO05D008301 8.2e-115 417.5 345 68.1
Medtr7g076280 Medicago truncatula HOM05D006490 ORTHO05D008301 8.2e-115 417.5 347 68.9
Lalb_Chr01g0021141 Lupinus albus HOM05D006490 ORTHO05D008301 1.0e-112 410.6 343 67.6
Psat0s1132g0040 Pisum sativum HOM05D006490 ORTHO05D008301 1.3e-112 410.2 346 67.1
arahy.Tifrunner.gnm1.ann1.90SIZ3 Arachis hypogaea HOM05D006490 ORTHO05D008301 1.7e-112 409.8 362 65.2
TPR.G37730 Trifolium pratense HOM05D006490 ORTHO05D008301 1.8e-106 389.8 311 69.1
CiPaw.01G053400 Carya illinoinensis HOM05D006490 ORTHO05D008301 5.0e-104 381.7 349 62.8
Lj1g0027165 Lotus japonicus HOM05D006490 ORTHO05D008301 4.0e-101 372.1 323 65.9
RcHm_v2.0_Chr1g0352201 Rosa chinensis HOM05D006490 ORTHO05D008301 7.5e-100 367.9 352 61.1
QL08p050661 Quercus lobata HOM05D006490 ORTHO05D008301 1.3e-96 357.1 378 56.6
ClCG05G001900 Citrullus lanatus HOM05D006490 ORTHO05D008301 1.7e-96 356.7 337 61.4
MD07G1128700 Malus domestica HOM05D006490 ORTHO05D008301 3.8e-96 355.5 360 58.6
FAN10G0695 Fragaria x ananassa HOM05D006490 ORTHO05D008301 1.5e-95 353.6 351 58.7
FAN10G3169 Fragaria x ananassa HOM05D006490 ORTHO05D008301 1.5e-95 353.6 350 58.9
Nn1g01348 Nelumbo nucifera HOM05D006490 ORTHO05D008301 1.5e-95 353.6 289 67.8
TWI59G0097 Tripterygium wilfordii HOM05D006490 ORTHO05D008301 7.2e-95 351.3 340 60.3
FAN06G2547 Fragaria x ananassa HOM05D006490 ORTHO05D008301 9.4e-95 350.9 354 57.9
Prupe.2G154300 Prunus persica HOM05D006490 ORTHO05D008301 4.7e-94 348.6 358 58.1
COL.COLO4_12627 Corchorus olitorius HOM05D006490 ORTHO05D008301 3.0e-93 345.9 340 58.8
Potri.014G077100 Populus trichocarpa HOM05D006490 ORTHO05D008301 5.2e-93 345.1 335 59.4
CsaV3_3G009300 Cucumis sativus L. HOM05D006490 ORTHO05D008301 8.8e-93 344.4 338 59.2
FAN06G1200 Fragaria x ananassa HOM05D006490 ORTHO05D008301 8.8e-93 344.4 360 56.7
Thecc.01G368800 Theobroma cacao HOM05D006490 ORTHO05D008301 8.8e-93 344.4 334 60.5
GSVIVG01027529001 Vitis vinifera HOM05D006490 ORTHO05D008301 2.6e-92 342.8 330 59.4
Eucgr.D02236 Eucalyptus grandis HOM05D006490 ORTHO05D008301 3.4e-92 342.4 341 57.8
Gohir.D11G088800 Gossypium hirsutum HOM05D006490 ORTHO05D008301 9.8e-92 340.9 335 60.0
Atru.chr7.2364 Acer truncatum HOM05D006490 ORTHO05D008301 1.3e-91 340.5 324 61.4
Duzib138G1247 Durio zibethinus HOM05D006490 ORTHO05D008301 2.2e-91 339.7 335 58.8
CANSAT56G3458 Cannabis sativa HOM05D006490 ORTHO05D008301 3.7e-91 339.0 345 57.4
Gorai.007G094900 Gossypium raimondii HOM05D006490 ORTHO05D008301 8.3e-91 337.8 320 60.9
CSS0016422 Camellia sinensis var. sinensis HOM05D006490 ORTHO05D008301 4.1e-90 335.5 292 62.7
FAN01G0731 Fragaria x ananassa HOM05D006490 ORTHO05D008301 4.1e-90 335.5 347 56.5
Actinidia33445 Actinidia chinensis HOM05D006490 ORTHO05D008301 3.5e-89 332.4 339 56.6
MELO3C006150.2 Cucumis melo HOM05D006490 ORTHO05D008301 3.5e-89 332.4 321 60.1
Gohir.A11G084700 Gossypium hirsutum HOM05D006490 ORTHO05D008301 3.5e-89 332.4 335 58.5
Cfa004180 Carpinus fangiana HOM05D006490 ORTHO05D008301 1.3e-88 330.5 320 60.3
Aqoxy5G03982 Aquilegia oxysepala HOM05D006490 ORTHO05D008301 3.8e-88 328.9 339 56.9
HanXRQChr06g0169021 Helianthus annuus HOM05D006490 ORTHO05D008301 5.0e-88 328.6 340 55.6
Sopen01g037580 Solanum pennellii HOM05D006490 ORTHO05D008301 8.5e-88 327.8 343 55.4
TAR656G0005 Trochodendron aralioides HOM05D006490 ORTHO05D008301 1.5e-87 327.0 342 55.8
Sabra14G0055100 Salix brachista HOM05D006490 ORTHO05D008301 1.9e-87 326.6 385 52.7
PGSC0003DMG400017050 Solanum tuberosum HOM05D006490 ORTHO05D008301 1.9e-87 326.6 337 56.1
Solyc01g091800.3 Solanum lycopersicum HOM05D006490 ORTHO05D008301 2.5e-87 326.2 343 55.4
Ah.05g176030 Amaranthus hybridus HOM05D006490 ORTHO05D008301 3.2e-87 325.9 305 58.7
CiPaw.01G023700 Carya illinoinensis HOM05D006490 ORTHO05D008301 3.2e-87 325.9 235 75.3
AUR62033365 Chenopodium quinoa HOM05D006490 ORTHO05D008301 3.2e-87 325.9 340 55.9
THA.LOC104814092 Tarenaya hassleriana HOM05D006490 ORTHO05D008301 4.2e-87 325.5 316 59.8
TAR003G0001 Trochodendron aralioides HOM05D006490 ORTHO05D008301 4.2e-87 325.5 340 55.6
Nitab4.5_0010430g0030 Nicotiana tabacum HOM05D006490 ORTHO05D008301 7.2e-87 324.7 347 55.0
AL1G10470 Arabidopsis lyrata HOM05D006490 ORTHO05D008301 9.5e-87 324.3 345 55.4
AT1G01860 Arabidopsis thaliana HOM05D006490 ORTHO05D008301 2.1e-86 323.2 316 57.9
SGA_v2.0_scaffold153G37067 Striga asiatica HOM05D006490 ORTHO05D008301 2.7e-86 322.8 330 55.5
ECA236G2797 Erigeron canadensis HOM05D006490 ORTHO05D008301 1.4e-85 320.5 337 55.2
CARHR000480 Cardamine hirsuta HOM05D006490 ORTHO05D008301 1.8e-85 320.1 316 57.6
Lsat_1_v5_gn_7_8340 Lactuca sativa HOM05D006490 ORTHO05D008301 4.0e-85 318.9 334 54.5
Carub.0001s0036 Capsella rubella HOM05D006490 ORTHO05D008301 6.8e-85 318.2 330 54.2
Lj9A577G54 Lonicera japonica HOM05D006490 ORTHO05D008301 6.8e-85 318.2 286 60.8
CAN.G170.51 Capsicum annuum HOM05D006490 ORTHO05D008301 8.8e-85 317.8 295 59.7
Peaxi162Scf00021g00524 Petunia axillaris HOM05D006490 ORTHO05D008301 1.5e-84 317.0 315 56.5
FAN03G0539 Fragaria x ananassa HOM05D006490 ORTHO05D008301 2.6e-84 316.2 221 74.7
Thhalv10008101m.g Eutrema salsugineum HOM05D006490 ORTHO05D008301 5.7e-84 315.1 293 60.1
Manes.05G040300 Manihot esculenta HOM05D006490 ORTHO05D008301 5.7e-84 315.1 219 74.4
DCAR_023894 Daucus carota HOM05D006490 ORTHO05D008301 1.3e-83 313.9 340 54.1
PGR031G3648 Punica granatum HOM05D006490 ORTHO05D008301 1.7e-83 313.5 305 59.7
Sp1g00430 Schrenkiella parvula HOM05D006490 ORTHO05D008301 2.8e-83 312.8 293 59.4
Ciclev10020970m.g Citrus clementina HOM05D006490 ORTHO05D008301 3.7e-83 312.4 305 59.0
Aa31LG1G11190 Aethionema arabicum HOM05D006373 ORTHO05D008145 4.9e-83 312.0 293 59.4
MSTRG.17232 Avicennia marina HOM05D006490 ORTHO05D008301 6.3e-83 311.6 323 56.3
Cc02_g37220 Coffea canephora HOM05D006490 ORTHO05D008301 8.3e-83 311.2 342 53.8
EL10Ac1g00964 Beta vulgaris HOM05D006490 ORTHO05D008301 2.0e-81 306.6 361 52.1
Rhsim01G0155600 Rhododendron simsii HOM05D006490 ORTHO05D008301 7.7e-81 304.7 440 45.9
Hma1.2p1_0398F.1_g143820 Hydrangea macrophylla HOM05D006490 ORTHO05D008301 1.0e-80 304.3 214 74.3
BraA09t42265Z Brassica rapa HOM05D002904 ORTHO05D003206 5.0e-80 302.0 311 55.0
C08p53880 Brassica napus HOM05D002904 ORTHO05D003206 1.1e-79 300.8 284 59.2
Hund27326 Selenicereus undatus HOM05D006490 ORTHO05D008301 1.5e-79 300.4 391 49.1
Migut.B01686 Erythranthe guttata HOM05D006490 ORTHO05D008301 2.5e-79 299.7 336 53.0
vmacro20973 Vaccinium macrocarpon HOM05D006490 ORTHO05D008301 1.6e-78 297.0 251 64.9
Oeu024418.2 Olea europaea HOM05D006490 ORTHO05D008301 4.7e-78 295.4 316 54.1
Sc02g0002220 Simmondsia chinensis HOM05D006490 ORTHO05D008301 3.7e-75 285.8 268 59.7
BolC8t52902H Brassica oleracea HOM05D002904 ORTHO05D003206 2.4e-74 283.1 311 53.7
Haze_15229 Corylus avellana HOM05D006490 ORTHO05D008301 9.2e-74 281.2 289 57.1
ATR0757G055 Amborella trichopoda HOM05D006490 ORTHO05D008301 8.6e-72 274.6 280 55.0
PSO063G2041 Papaver somniferum HOM05D006490 ORTHO05D008301 2.1e-70 270.0 293 53.9
HPP92_016044 Vanilla planifolia HOM05D006490 ORTHO05D008301 1.8e-69 266.9 230 62.6
CDE12G0440 Ceratophyllum demersum HOM05D006490 ORTHO05D008301 8.9e-69 264.6 272 57.4
Zm00001eb208500 Zea mays HOM05D006490 ORTHO05D008301 6.4e-67 258.5 320 50.0
AUR62004290 Chenopodium quinoa HOM05D006490 ORTHO05D008301 1.9e-66 256.9 340 46.8
Cc02_g37650 Coffea canephora HOM05D006490 ORTHO05D008301 6.6e-64 248.4 179 73.2
FvH4_7g13110 Fragaria vesca HOM05D006490 ORTHO05D008301 5.8e-60 235.3 162 77.2
Pp3c10_22230 Physcomitrium patens HOM05D006490 ORTHO05D008301 1.1e-58 231.1 214 57.5
Sed0027884 Sechium edule HOM05D006490 ORTHO05D008301 7.1e-58 228.4 235 56.6
SMO244G0093 Selaginella moellendorffii HOM05D006490 ORTHO05D008301 7.1e-58 228.4 215 54.0
Mapoly0057s0065 Marchantia polymorpha HOM05D006490 ORTHO05D008301 8.1e-54 214.9 311 42.1
Dinv43755 Davidia involucrata HOM05D006490 ORTHO05D008301 1.1e-50 204.5 215 55.3
Nitab4.5_0004550g0090 Nicotiana tabacum HOM05D006490 ORTHO05D008301 1.6e-49 200.7 133 75.9
Hma1.2p1_0398F.1_g143810 Hydrangea macrophylla HOM05D006490 ORTHO05D008301 3.5e-41 172.9 234 46.6
CBR_g5745 Chara braunii HOM05D006490 ORTHO05D008301 3.6e-38 162.9 218 41.3
AagrBONN_evm.TU.Sc2ySwM_228.858 Anthoceros agrestis HOM05D006490 ORTHO05D008301 1.4e-34 151.0 141 51.1
MBI12_g25032_MAGBIO Magnolia biondii HOM05D006490 ORTHO05D008301 6.0e-33 145.6 252 42.9
MCO10G251 Micromonas commoda HOM05D006490 ORTHO05D008301 6.7e-32 142.1 212 37.3
unitig_26.g9312 Utricularia gibba HOM05D006490 ORTHO05D008301 6.2e-30 135.6 274 37.6
Cpa.g.sc18.199 Carica papaya HOM05D006490 ORTHO05D008301 2.4e-29 133.7 83 85.5
Gorai.009G376300 Gossypium raimondii HOM05D006490 ORTHO05D008301 3.8e-27 126.3 76 81.6
SGA_v2.0_scaffold166G38351 Striga asiatica HOM05D006490 ORTHO05D008301 1.9e-26 124.0 107 60.7
Cpa.g.sc1680.2 Carica papaya HOM05D006490 ORTHO05D008301 1.6e-25 120.9 205 43.4
Cre06.g309300 Chlamydomonas reinhardtii HOM05D006490 ORTHO05D008301 2.7e-25 120.2 162 38.9
Sed0027241 Sechium edule HOM05D006490 ORTHO05D008301 2.7e-25 120.2 139 51.1
Nitab4.5_0004550g0030 Nicotiana tabacum HOM05D006490 ORTHO05D008301 1.9e-23 114.0 204 41.7
SGA_v2.0_scaffold79G25583 Striga asiatica HOM05D006490 ORTHO05D008301 9.3e-18 95.1 82 61.0
SEGI_26576 Sequoiadendron giganteum HOM05D006490 ORTHO05D008301 1.1e-10 71.6 65 52.3
SGA_v2.0_scaffold35G14106 Striga asiatica HOM05D006490 ORTHO05D405018 4.2e-10 69.7 58 58.6
Prupe.2G159600 Prunus persica HOM05D006490 ORTHO05D008301 1.2e-09 68.2 49 71.4
Lsat_1_v5_gn_4_151541 Lactuca sativa HOM05D002539 ORTHO05D002876 1.0e-08 65.1 170 31.8
FAN06G3554 Fragaria x ananassa HOM05D000005 ORTHO05D011727 1.8e-08 64.3 102 39.2
Potri.018G018900 Populus trichocarpa HOM05D002539 ORTHO05D002876 1.1e-07 61.6 207 27.1
Sabra18G0021600 Salix brachista HOM05D002539 ORTHO05D002876 1.5e-07 61.2 225 27.1
Aa31LG1G14890 Aethionema arabicum HOM05D002539 ORTHO05D002876 2.5e-07 60.5 170 27.1
ECA232G1621 Erigeron canadensis HOM05D002539 ORTHO05D002876 3.3e-07 60.1 118 34.7
HanXRQChr11g0326011 Helianthus annuus HOM05D002539 ORTHO05D002876 3.3e-07 60.1 170 29.4
Ca_24886_v3 Cicer arietinum L. HOM05D002539 ORTHO05D002876 4.3e-07 59.7 225 28.0
Phvul.002G167300 Phaseolus vulgaris HOM05D002539 ORTHO05D002876 4.3e-07 59.7 178 28.7
Haze_15228 Corylus avellana HOM05D006490 ORTHO05D008301 7.4e-07 58.9 38 78.9
DCAR_017320 Daucus carota HOM05D002539 ORTHO05D002876 7.4e-07 58.9 178 28.7
Ah.03g141490 Amaranthus hybridus HOM05D002539 ORTHO05D002876 9.7e-07 58.5 160 31.2
Duzib187G0908 Durio zibethinus HOM05D002539 ORTHO05D002876 9.7e-07 58.5 170 28.8
MD15G1251400 Malus domestica HOM05D002539 ORTHO05D002876 9.7e-07 58.5 175 28.0
CARHR281350 Cardamine hirsuta HOM05D002539 ORTHO05D002876 1.3e-06 58.2 178 28.1
COL.COLO4_21991 Corchorus olitorius HOM05D002539 ORTHO05D002876 1.3e-06 58.2 197 28.9
Eucgr.J02386 Eucalyptus grandis HOM05D002539 ORTHO05D002876 1.3e-06 58.2 140 32.9
Manes.02G099300 Manihot esculenta HOM05D002539 ORTHO05D002876 1.3e-06 58.2 170 28.8
Zm00001eb233640 Zea mays HOM05D002539 ORTHO05D002876 1.3e-06 58.2 218 28.4
Atru.chr3.739 Acer truncatum HOM05D002539 ORTHO05D002876 1.6e-06 57.8 191 26.7
THA.LOC104826654 Tarenaya hassleriana HOM05D002539 ORTHO05D002876 1.6e-06 57.8 195 26.7
A07p17630 Brassica napus HOM05D002539 ORTHO05D002876 2.2e-06 57.4 170 27.6
AUR62007631 Chenopodium quinoa HOM05D002539 ORTHO05D002876 2.2e-06 57.4 170 30.0
Rhsim05G0132200 Rhododendron simsii HOM05D002539 ORTHO05D002876 2.2e-06 57.4 170 31.8
BraA07t29483Z Brassica rapa HOM05D002539 ORTHO05D002876 2.8e-06 57.0 170 27.6
Carub.0008s2815 Capsella rubella HOM05D002539 ORTHO05D002876 3.7e-06 56.6 170 26.5
CiPaw.08G144900 Carya illinoinensis HOM05D002539 ORTHO05D002876 3.7e-06 56.6 180 28.9
FAN28G1266 Fragaria x ananassa HOM05D002539 ORTHO05D002876 3.7e-06 56.6 118 34.7
Lj4A211T65 Lonicera japonica HOM05D002539 ORTHO05D002876 3.7e-06 56.6 159 30.8
Sed0016257 Sechium edule HOM05D002539 ORTHO05D002876 3.7e-06 56.6 170 29.4
Aqoxy5G03995 Aquilegia oxysepala HOM05D006490 ORTHO05D008301 4.8e-06 56.2 85 43.5
Aqoxy5G04011 Aquilegia oxysepala HOM05D006490 ORTHO05D008301 4.8e-06 56.2 85 43.5
AL8G45170 Arabidopsis lyrata HOM05D002539 ORTHO05D002876 4.8e-06 56.2 170 26.5
AT5G66360 Arabidopsis thaliana HOM05D002539 ORTHO05D002876 4.8e-06 56.2 170 26.5
Os10g0183900 Oryza sativa ssp. japonica HOM05D002539 ORTHO05D002876 4.8e-06 56.2 170 31.8
vmacro19791 Vaccinium macrocarpon HOM05D002539 ORTHO05D002876 4.8e-06 56.2 170 31.2
GSVIVG01018854001 Vitis vinifera HOM05D002539 ORTHO05D002876 4.8e-06 56.2 124 31.5
MSTRG.5140 Avicennia marina HOM05D002539 ORTHO05D002876 6.3e-06 55.8 170 31.2
CSS0045783 Camellia sinensis var. sinensis HOM05D002539 ORTHO05D002876 6.3e-06 55.8 191 26.7
TPR.G2384 Trifolium pratense HOM05D002539 ORTHO05D002876 6.3e-06 55.8 161 29.8
TAR628G0175 Trochodendron aralioides HOM05D002539 ORTHO05D002876 6.3e-06 55.8 170 28.8
EL10As8g23876 Beta vulgaris HOM05D002539 ORTHO05D002876 8.2e-06 55.5 143 30.1
Thhalv10005567m.g Eutrema salsugineum HOM05D002539 ORTHO05D002876 8.2e-06 55.5 170 25.3
FvH4_1g12340 Fragaria vesca HOM05D002539 ORTHO05D002876 8.2e-06 55.5 118 33.9
FAN23G2451 Fragaria x ananassa HOM05D002539 ORTHO05D002876 8.2e-06 55.5 118 33.9
FAN26G2313 Fragaria x ananassa HOM05D002539 ORTHO05D002876 8.2e-06 55.5 131 31.3
Sp2g30390 Schrenkiella parvula HOM05D002539 ORTHO05D002876 8.2e-06 55.5 171 25.1
Thecc.01G026200 Theobroma cacao HOM05D002539 ORTHO05D002876 8.2e-06 55.5 170 27.6


User provided reference genes

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