Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 4.3e-159 564.7 300 100.0
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 3.9e-144 515.0 290 91.4
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 1.1e-133 480.3 290 84.1
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 3.1e-133 478.8 289 85.1
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 9.0e-133 477.2 295 82.0
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 3.4e-132 475.3 292 84.2
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 4.2e-130 468.4 290 80.7
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 4.6e-129 464.9 289 81.0
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 2.5e-127 459.1 290 79.0
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 1.6e-126 456.4 288 81.9
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 8.4e-123 444.1 290 78.3
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 3.2e-122 442.2 291 78.4
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 3.3e-119 432.2 291 80.1
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 4.6e-113 411.8 291 73.9
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 4.6e-113 411.8 291 73.9
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 3.1e-93 345.9 295 61.4
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 7.7e-92 341.3 294 59.9
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 3.8e-91 339.0 294 59.5
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 6.5e-91 338.2 298 60.1
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 1.1e-90 337.4 294 59.2
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 3.2e-90 335.9 295 60.3
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 1.6e-89 333.6 295 59.0
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 2.7e-89 332.8 295 60.0
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 3.6e-89 332.4 295 59.0
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 1.0e-88 330.9 293 59.4
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 1.8e-88 330.1 294 57.8
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 8.8e-88 327.8 295 59.0
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 9.7e-87 324.3 295 57.3
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 1.3e-86 323.9 295 57.3
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.3e-86 323.9 295 57.3
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 2.2e-86 323.2 295 59.0
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 3.7e-86 322.4 296 58.1
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 1.1e-85 320.9 295 57.6
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 1.1e-85 320.9 296 57.4
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 1.4e-85 320.5 295 57.3
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 5.3e-85 318.5 295 57.6
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 9.1e-85 317.8 295 57.3
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 9.1e-85 317.8 295 57.3
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.0e-84 316.6 295 56.3
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.6e-84 316.2 295 56.3
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 2.6e-84 316.2 295 56.3
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 2.9e-83 312.8 295 56.6
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 8.5e-83 311.2 295 56.3
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 1.1e-82 310.8 293 55.3
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 1.9e-82 310.1 294 55.1
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 3.2e-82 309.3 296 54.7
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 9.4e-82 307.8 295 56.3
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 1.6e-81 307.0 295 54.6
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 2.7e-81 306.2 295 54.2
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 3.6e-81 305.8 293 54.9
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 6.1e-81 305.1 295 54.2
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 8.0e-81 304.7 295 53.6
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 2.6e-79 299.7 293 52.2
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 4.4e-79 298.9 295 53.2
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 5.7e-79 298.5 294 52.7
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 5.7e-79 298.5 303 54.5
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 2.2e-78 296.6 295 52.9
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 2.8e-78 296.2 295 52.2
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 4.8e-78 295.4 293 52.2
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 8.2e-78 294.7 295 53.2
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 1.1e-77 294.3 292 52.4
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 1.4e-77 293.9 294 51.4
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 4.1e-77 292.4 295 53.6
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 2.0e-76 290.0 295 50.8
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 2.0e-76 290.0 295 51.5
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 2.0e-76 290.0 295 51.5
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 2.9e-75 286.2 295 50.2
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 6.5e-75 285.0 295 52.2
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 8.5e-75 284.6 295 50.5
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.1e-74 284.3 295 50.5
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 1.1e-74 284.3 295 49.5
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.9e-74 283.5 295 51.5
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 3.2e-74 282.7 293 51.2
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 3.2e-74 282.7 295 49.5
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 3.2e-74 282.7 295 49.5
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 5.5e-74 282.0 295 53.6
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 2.1e-73 280.0 300 51.0
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 1.4e-72 277.3 297 52.5
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 1.8e-72 276.9 297 51.5
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 2.6e-71 273.1 300 50.7
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 3.4e-71 272.7 290 49.7
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 4.4e-71 272.3 297 53.2
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 4.8e-70 268.9 298 48.0
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 5.4e-69 265.4 295 50.8
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 7.0e-69 265.0 293 48.8
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 1.2e-68 264.2 295 49.2
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 4.5e-68 262.3 297 48.1
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 1.0e-67 261.2 296 46.3
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 3.8e-67 259.2 295 48.1
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 2.5e-66 256.5 292 49.0
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 4.2e-66 255.8 291 48.1
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 2.1e-65 253.4 295 49.2
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 3.6e-65 252.7 291 47.1
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 4.0e-64 249.2 294 49.7
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 5.2e-64 248.8 294 48.0
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 5.2e-64 248.8 294 48.0
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 3.4e-63 246.1 295 47.8
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 3.7e-62 242.7 301 46.5
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 3.7e-62 242.7 301 46.5
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 8.3e-62 241.5 295 46.4
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 5.0e-59 232.3 301 44.2
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 8.6e-59 231.5 291 44.3
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 8.6e-59 231.5 292 43.5
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 2.5e-58 229.9 296 43.2
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 5.6e-58 228.8 296 43.2
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 9.5e-58 228.0 294 45.2
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 3.0e-56 223.0 291 43.3
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 9.8e-55 218.0 285 43.9
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 1.3e-54 217.6 297 40.7
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 1.7e-54 217.2 294 44.2
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 1.4e-53 214.2 295 41.0
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 5.4e-53 212.2 294 43.5
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 1.6e-52 210.7 294 43.5
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 2.0e-52 210.3 298 43.6
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 4.7e-49 199.1 294 41.8
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 1.0e-48 198.0 306 39.9
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 2.3e-48 196.8 312 39.1
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 3.1e-48 196.4 294 40.5
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 3.9e-43 179.5 226 44.7
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 3.4e-39 166.4 216 44.4
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 7.5e-39 165.2 216 44.4
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 3.6e-33 146.4 183 44.3
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 4.0e-32 142.9 152 55.3
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 4.4e-31 139.4 132 52.3
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 5.8e-31 139.0 152 54.6
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 1.2e-28 131.3 285 30.2
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 4.6e-28 129.4 247 32.4
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.6e-17 94.4 88 48.9
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.1e-16 91.7 165 37.6
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.1e-13 81.6 87 48.3
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 4.2e-13 79.7 74 59.5
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 1.2e-12 78.2 74 59.5
CARHR069340 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.0e-11 75.1 77 50.6
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.3e-11 73.9 72 52.8
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 6.9e-08 62.4 68 44.1
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 1.2e-07 61.6 74 52.7
Sabra10G0198200 Salix brachista HOM05D004199 ORTHO05D349944 6.4e-06 55.8 128 34.4


User provided reference genes

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