Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G167866 Glycine max HOM05D002628 ORTHO05D002785 8.3e-52 206.8 110 100.0
Glyma.18G168966 Glycine max HOM05D002628 ORTHO05D002785 8.3e-52 206.8 110 100.0
Glyma.08G352600 Glycine max HOM05D002628 ORTHO05D002785 6.6e-49 197.2 107 99.1
Glyma.18G169600 Glycine max HOM05D002628 ORTHO05D002785 8.9e-46 186.8 107 93.5
Phvul.008G126600 Phaseolus vulgaris HOM05D002628 ORTHO05D002785 4.3e-40 167.9 106 83.0
VMungo1383G0087 Vigna mungo HOM05D002628 ORTHO05D002785 8.0e-39 163.7 106 82.1
Lj1g0019543 Lotus japonicus HOM05D002628 ORTHO05D002785 1.6e-31 139.4 108 74.1
Lalb_Chr19g0125651 Lupinus albus HOM05D002628 ORTHO05D002785 3.4e-29 131.7 107 72.0
Lalb_Chr03g0041701 Lupinus albus HOM05D002628 ORTHO05D002785 6.4e-28 127.5 104 68.3
Psat3g145600 Pisum sativum HOM05D002628 ORTHO05D002785 1.1e-27 126.7 108 69.4
TPR.G31107 Trifolium pratense HOM05D002628 ORTHO05D002785 3.2e-27 125.2 108 68.5
arahy.Tifrunner.gnm1.ann1.23VDWQ Arachis hypogaea HOM05D002628 ORTHO05D002785 4.1e-27 124.8 108 67.6
Ca_26871_v3 Cicer arietinum L. HOM05D002628 ORTHO05D002785 1.2e-26 123.2 108 67.6
arahy.Tifrunner.gnm1.ann1.82MK2E Arachis hypogaea HOM05D002628 ORTHO05D002785 7.8e-26 120.6 108 67.6
Lalb_Chr01g0022291 Lupinus albus HOM05D002628 ORTHO05D002785 8.6e-25 117.1 108 66.7
Haze_24810 Corylus avellana HOM05D002628 ORTHO05D002785 5.6e-24 114.4 107 62.6
Lj3g0004121 Lotus japonicus HOM05D002628 ORTHO05D002785 8.9e-22 107.1 107 59.8
Medtr7g056603 Medicago truncatula HOM05D002628 ORTHO05D002785 2.6e-21 105.5 108 60.2
Atru.chr5.2101 Acer truncatum HOM05D002628 ORTHO05D002785 4.4e-21 104.8 107 58.9
Cfa002577 Carpinus fangiana HOM05D002628 ORTHO05D002785 5.8e-21 104.4 107 60.7
COL.COLO4_15677 Corchorus olitorius HOM05D002628 ORTHO05D002785 1.3e-20 103.2 107 59.8
Duzib138G1695 Durio zibethinus HOM05D002628 ORTHO05D002785 2.2e-20 102.4 107 58.9
Thecc.01G224600 Theobroma cacao HOM05D002628 ORTHO05D002785 2.2e-20 102.4 107 60.7
Dinv12687 Davidia involucrata HOM05D002628 ORTHO05D002785 4.9e-20 101.3 107 54.2
Glyma.03G081300 Glycine max HOM05D002628 ORTHO05D002785 4.9e-20 101.3 109 61.5
Manes.12G045400 Manihot esculenta HOM05D002628 ORTHO05D002785 4.9e-20 101.3 106 56.6
Prupe.8G201800 Prunus persica HOM05D002628 ORTHO05D002785 1.1e-19 100.1 107 57.0
CiPaw.03G148700 Carya illinoinensis HOM05D002628 ORTHO05D002785 1.9e-19 99.4 109 56.0
PGR083G0125 Punica granatum HOM05D002628 ORTHO05D002785 2.4e-19 99.0 100 54.0
RcHm_v2.0_Chr6g0284671 Rosa chinensis HOM05D002628 ORTHO05D002785 5.4e-19 97.8 107 54.2
QL09p053994 Quercus lobata HOM05D002628 ORTHO05D002785 7.1e-19 97.4 107 57.0
Duzib211G0579 Durio zibethinus HOM05D002628 ORTHO05D002785 1.2e-18 96.7 107 54.2
Sabra02G0185300 Salix brachista HOM05D002628 ORTHO05D002785 1.6e-18 96.3 107 57.0
Phvul.010G018800 Phaseolus vulgaris HOM05D002628 ORTHO05D002785 2.1e-18 95.9 108 59.3
VMungo0331G0007 Vigna mungo HOM05D002628 ORTHO05D002785 2.1e-18 95.9 108 53.7
FvH4_2g18860 Fragaria vesca HOM05D002628 ORTHO05D002785 3.5e-18 95.1 107 54.2
FAN24G2878 Fragaria x ananassa HOM05D002628 ORTHO05D002785 3.5e-18 95.1 107 54.2
Potri.014G189900 Populus trichocarpa HOM05D002628 ORTHO05D002785 3.5e-18 95.1 107 54.2
FAN27G0734 Fragaria x ananassa HOM05D002628 ORTHO05D002785 4.6e-18 94.7 107 54.2
CiPaw.04G105000 Carya illinoinensis HOM05D002628 ORTHO05D002785 6.0e-18 94.4 107 54.2
MD05G1174400 Malus domestica HOM05D002628 ORTHO05D002785 6.0e-18 94.4 107 57.0
GSVIVG01028685001 Vitis vinifera HOM05D002628 ORTHO05D002785 6.0e-18 94.4 107 53.3
Gohir.A08G194900 Gossypium hirsutum HOM05D002628 ORTHO05D002785 7.8e-18 94.0 107 57.9
MD10G1163500 Malus domestica HOM05D002628 ORTHO05D002785 7.8e-18 94.0 107 55.1
Manes.13G047100 Manihot esculenta HOM05D002628 ORTHO05D002785 7.8e-18 94.0 106 55.7
Glyma.16G093800 Glycine max HOM05D002628 ORTHO05D002785 1.0e-17 93.6 108 59.3
Duzib133G0258 Durio zibethinus HOM05D002628 ORTHO05D002785 2.3e-17 92.4 107 56.1
Gohir.D08G212600 Gossypium hirsutum HOM05D002628 ORTHO05D002785 2.3e-17 92.4 107 57.0
Gorai.004G226000 Gossypium raimondii HOM05D002628 ORTHO05D002785 2.3e-17 92.4 107 57.0
Actinidia09479 Actinidia chinensis HOM05D002628 ORTHO05D002785 3.0e-17 92.0 107 51.4
Nn1g07877 Nelumbo nucifera HOM05D002628 ORTHO05D002785 5.1e-17 91.3 106 56.6
Cc01_g16950 Coffea canephora HOM05D002628 ORTHO05D002785 6.6e-17 90.9 106 50.9
Potri.002G243350 Populus trichocarpa HOM05D002628 ORTHO05D002785 1.5e-16 89.7 107 57.0
Actinidia23721 Actinidia chinensis HOM05D002628 ORTHO05D002785 1.9e-16 89.4 107 50.5
Aa31LG8G11310 Aethionema arabicum HOM05D002628 ORTHO05D002785 3.3e-16 88.6 97 53.6
Dinv19196 Davidia involucrata HOM05D002628 ORTHO05D002785 3.3e-16 88.6 107 51.4
Cpa.g.sc8.144 Carica papaya HOM05D002628 ORTHO05D002785 4.3e-16 88.2 107 54.2
TWI75G1871 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 4.3e-16 88.2 107 55.1
vmacro14750 Vaccinium macrocarpon HOM05D002628 ORTHO05D002785 4.3e-16 88.2 109 49.5
TAR362G0009 Trochodendron aralioides HOM05D002628 ORTHO05D002785 7.3e-16 87.4 107 55.1
Lj2C1130G3 Lonicera japonica HOM05D002628 ORTHO05D002785 9.6e-16 87.0 108 50.0
Sabra14G0142700 Salix brachista HOM05D002628 ORTHO05D002785 9.6e-16 87.0 78 62.8
AL3G40640 Arabidopsis lyrata HOM05D002628 ORTHO05D002785 1.6e-15 86.3 99 53.5
Actinidia37601 Actinidia chinensis HOM05D002628 ORTHO05D002785 2.1e-15 85.9 107 52.3
CANSAT01G2524 Cannabis sativa HOM05D002628 ORTHO05D002785 2.1e-15 85.9 106 52.8
Rhsim01G0255500 Rhododendron simsii HOM05D002628 ORTHO05D002785 2.1e-15 85.9 109 50.5
EL10Ac7g17849 Beta vulgaris HOM05D002628 ORTHO05D002785 2.8e-15 85.5 101 52.5
Ciclev10018446m.g Citrus clementina HOM05D002628 ORTHO05D002785 2.8e-15 85.5 95 56.8
MSTRG.18000 Avicennia marina HOM05D002628 ORTHO05D002785 3.6e-15 85.1 95 54.7
Eucgr.H00795 Eucalyptus grandis HOM05D002628 ORTHO05D002785 4.7e-15 84.7 106 49.1
Hma1.2p1_0226F.1_g095630 Hydrangea macrophylla HOM05D002628 ORTHO05D002785 4.7e-15 84.7 107 51.4
Carub.0003s2528 Capsella rubella HOM05D002628 ORTHO05D002785 6.2e-15 84.3 99 54.5
Gohir.A07G201100 Gossypium hirsutum HOM05D002628 ORTHO05D002785 8.1e-15 84.0 107 51.4
SalBow3G0995 Salvia bowleyana HOM05D002628 ORTHO05D002785 1.8e-14 82.8 105 47.6
Gohir.A11G137900 Gossypium hirsutum HOM05D002628 ORTHO05D002785 2.4e-14 82.4 107 52.3
Gorai.001G233800 Gossypium raimondii HOM05D002628 ORTHO05D002785 2.4e-14 82.4 107 50.5
TWI18G0012 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 2.4e-14 82.4 107 51.4
Gorai.007G155000 Gossypium raimondii HOM05D002628 ORTHO05D002785 3.1e-14 82.0 107 52.3
Carub.0003s2526 Capsella rubella HOM05D002628 ORTHO05D002785 4.0e-14 81.6 99 53.5
Migut.N00620 Erythranthe guttata HOM05D002628 ORTHO05D002785 4.0e-14 81.6 105 48.6
AT3G24870 Arabidopsis thaliana HOM05D002628 ORTHO05D002785 5.2e-14 81.3 99 51.5
AT3G24880 Arabidopsis thaliana HOM05D002628 ORTHO05D002785 5.2e-14 81.3 99 51.5
SalBow6G2694 Salvia bowleyana HOM05D002628 ORTHO05D002785 5.2e-14 81.3 105 44.8
ClCG09G008950 Citrullus lanatus HOM05D002628 ORTHO05D002785 9.0e-14 80.5 106 50.9
Gohir.D07G207400 Gossypium hirsutum HOM05D002628 ORTHO05D002785 9.0e-14 80.5 107 49.5
CARHR101290 Cardamine hirsuta HOM05D002628 ORTHO05D002785 1.2e-13 80.1 97 53.6
SalBow6G7039 Salvia bowleyana HOM05D002628 ORTHO05D002785 1.2e-13 80.1 105 43.8
AUR62001094 Chenopodium quinoa HOM05D002628 ORTHO05D002785 1.5e-13 79.7 108 47.2
Sc05g0002110 Simmondsia chinensis HOM05D002628 ORTHO05D002785 1.5e-13 79.7 107 49.5
AUR62008919 Chenopodium quinoa HOM05D002628 ORTHO05D002785 2.0e-13 79.3 108 47.2
CsaV3_7G026060 Cucumis sativus L. HOM05D002628 ORTHO05D002785 3.4e-13 78.6 106 50.0
Oeu004073.1 Olea europaea HOM05D002628 ORTHO05D002785 4.4e-13 78.2 107 44.9
MELO3C021029.2 Cucumis melo HOM05D002628 ORTHO05D002785 5.8e-13 77.8 106 50.0
ECA248G1308 Erigeron canadensis HOM05D002628 ORTHO05D002785 1.3e-12 76.6 106 53.8
Hund18389 Selenicereus undatus HOM05D002628 ORTHO05D002785 1.3e-12 76.6 109 42.2
Nitab4.5_0003758g0060 Nicotiana tabacum HOM05D002628 ORTHO05D002785 2.2e-12 75.9 106 48.1
Migut.D02520 Erythranthe guttata HOM05D002628 ORTHO05D002785 2.9e-12 75.5 106 49.1
TWI36G1593 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 2.9e-12 75.5 103 49.5
Lsat_1_v5_gn_8_89820 Lactuca sativa HOM05D002628 ORTHO05D002785 6.4e-12 74.3 105 47.6
ECA236G2127 Erigeron canadensis HOM05D002628 ORTHO05D002785 8.4e-12 73.9 106 49.1
DCAR_012651 Daucus carota HOM05D002628 ORTHO05D002785 1.1e-11 73.6 105 44.8
Aa31LG9G4800 Aethionema arabicum HOM05D002628 ORTHO05D002785 1.4e-11 73.2 99 47.5
HanXRQChr04g0108091 Helianthus annuus HOM05D002628 ORTHO05D002785 1.4e-11 73.2 109 47.7
Lj1A87T37 Lonicera japonica HOM05D002628 ORTHO05D002785 1.4e-11 73.2 107 43.9
Sed0004451 Sechium edule HOM05D002628 ORTHO05D002785 1.4e-11 73.2 107 50.5
MSTRG.12779 Avicennia marina HOM05D002628 ORTHO05D002785 1.9e-11 72.8 104 41.3
A07p07330 Brassica napus HOM05D002628 ORTHO05D002785 2.4e-11 72.4 99 50.5
BraA07t28522Z Brassica rapa HOM05D002628 ORTHO05D002785 2.4e-11 72.4 99 50.5
Thhalv10002368m.g Eutrema salsugineum HOM05D002628 ORTHO05D002785 2.4e-11 72.4 94 50.0
Solyc09g060080.4 Solanum lycopersicum HOM05D002628 ORTHO05D002785 7.1e-11 70.9 108 50.0
Sopen09g023690 Solanum pennellii HOM05D002628 ORTHO05D002785 7.1e-11 70.9 108 50.0
SGA_v2.0_scaffold6G03236 Striga asiatica HOM05D002628 ORTHO05D002785 7.1e-11 70.9 105 43.8
Nitab4.5_0002223g0030 Nicotiana tabacum HOM05D002628 ORTHO05D002785 9.3e-11 70.5 96 47.9
Hund05562 Selenicereus undatus HOM05D002628 ORTHO05D002785 9.3e-11 70.5 106 42.5
Aqoxy6G02008 Aquilegia oxysepala HOM05D002628 ORTHO05D002785 1.6e-10 69.7 108 48.1
BcaC06g35765 Brassica carinata HOM05D002628 ORTHO05D002785 1.6e-10 69.7 99 49.5
Nitab4.5_0001564g0060 Nicotiana tabacum HOM05D002628 ORTHO05D002785 1.6e-10 69.7 96 46.9
Oeu022247.1 Olea europaea HOM05D002628 ORTHO05D002785 1.6e-10 69.7 64 56.2
PSO675G2169 Papaver somniferum HOM05D002628 ORTHO05D002785 1.6e-10 69.7 108 47.2
PGSC0003DMG400017665 Solanum tuberosum HOM05D002628 ORTHO05D002785 1.6e-10 69.7 108 49.1
TAR633G2086 Trochodendron aralioides HOM05D002628 ORTHO05D002785 2.7e-10 68.9 107 46.7
C07p11110 Brassica napus HOM05D002628 ORTHO05D002785 3.5e-10 68.6 99 48.5
BolC7t41583H Brassica oleracea HOM05D002628 ORTHO05D002785 3.5e-10 68.6 99 48.5
DCAR_018575 Daucus carota HOM05D002628 ORTHO05D002785 6.0e-10 67.8 103 43.7
Sp3g22600 Schrenkiella parvula HOM05D002628 ORTHO05D002785 1.3e-09 66.6 79 53.2
SpUn0027_0080 Schrenkiella parvula HOM05D002628 ORTHO05D002785 1.3e-09 66.6 79 53.2
CAN.G771.81 Capsicum annuum HOM05D002628 ORTHO05D002785 1.7e-09 66.2 107 45.8
HanXRQChr14g0445581 Helianthus annuus HOM05D002628 ORTHO05D002785 1.7e-09 66.2 104 46.2
CAN.G15.8 Capsicum annuum HOM05D002628 ORTHO05D002785 3.9e-09 65.1 107 46.7
BcaB06g26704 Brassica carinata HOM05D002628 ORTHO05D002785 6.6e-09 64.3 97 51.5
Os05g0593300 Oryza sativa ssp. japonica HOM05D002628 ORTHO05D002785 6.6e-09 64.3 106 41.5
Ah.15g093990 Amaranthus hybridus HOM05D002628 ORTHO05D002785 8.7e-09 63.9 109 42.2
CDE04G0039 Ceratophyllum demersum HOM05D002628 ORTHO05D002785 1.1e-08 63.5 109 41.3
AL9U11010 Arabidopsis lyrata HOM05D002628 ORTHO05D002785 1.9e-08 62.8 97 46.4
Peaxi162Scf00517g00636 Petunia axillaris HOM05D002628 ORTHO05D002785 2.5e-08 62.4 98 40.8
Sopen06g034780 Solanum pennellii HOM05D002628 ORTHO05D002785 2.5e-08 62.4 99 47.5
HanXRQChr01g0015181 Helianthus annuus HOM05D002628 ORTHO05D002785 5.6e-08 61.2 105 41.0
CARHR218580 Cardamine hirsuta HOM05D002628 ORTHO05D002785 1.3e-07 60.1 100 41.0
CDE07G1586 Ceratophyllum demersum HOM05D002628 ORTHO05D002785 1.6e-07 59.7 107 40.2
Rhsim13G0045600 Rhododendron simsii HOM05D002628 ORTHO05D002785 1.6e-07 59.7 106 44.3
Solyc06g083420.3 Solanum lycopersicum HOM05D002628 ORTHO05D002785 2.1e-07 59.3 99 46.5
HPP92_000545 Vanilla planifolia HOM05D002628 ORTHO05D002785 3.6e-07 58.5 106 41.5
C03p54320 Brassica napus HOM05D002628 ORTHO05D002785 4.8e-07 58.2 99 43.4
ATR0796G299 Amborella trichopoda HOM05D002628 ORTHO05D002785 6.2e-07 57.8 107 42.1
Sed0013250 Sechium edule HOM05D002628 ORTHO05D002785 8.1e-07 57.4 108 41.7
vmacro02763 Vaccinium macrocarpon HOM05D002628 ORTHO05D002785 1.1e-06 57.0 106 39.6
vmacro16364 Vaccinium macrocarpon HOM05D002628 ORTHO05D002785 1.1e-06 57.0 106 41.5
SGA_v2.0_scaffold3G01640 Striga asiatica HOM05D002628 ORTHO05D002785 1.8e-06 56.2 113 37.2
SHI31151 Sapria himalayana HOM05D002628 ORTHO05D002785 2.4e-06 55.8 104 40.4
BcaC01g03251 Brassica carinata HOM05D002628 ORTHO05D002785 5.3e-06 54.7 99 42.4
BolC3t17718H Brassica oleracea HOM05D002628 ORTHO05D002785 5.3e-06 54.7 99 42.4


User provided reference genes

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