Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G013500 Glycine max HOM05D003359 ORTHO05D004472 6.0e-123 444.1 214 100.0
Glyma.11G243600 Glycine max HOM05D003359 ORTHO05D004472 1.1e-105 386.7 206 91.3
VMungo1383G0093 Vigna mungo HOM05D003359 ORTHO05D004472 3.2e-100 368.6 206 86.9
Phvul.001G255500 Phaseolus vulgaris HOM05D003359 ORTHO05D004472 1.9e-97 359.4 204 86.8
Ca_25137_v3 Cicer arietinum L. HOM05D003359 ORTHO05D004472 1.3e-88 330.1 203 77.8
Psat5g091760 Pisum sativum HOM05D003359 ORTHO05D004472 4.1e-87 325.1 201 77.1
TPR.G30530 Trifolium pratense HOM05D003359 ORTHO05D004472 5.0e-85 318.2 207 75.4
Lj6g0024639 Lotus japonicus HOM05D003359 ORTHO05D004472 2.3e-82 309.3 209 73.2
Medtr3g086580 Medicago truncatula HOM05D003359 ORTHO05D004472 3.9e-82 308.5 202 75.2
Lalb_Chr07g0185431 Lupinus albus HOM05D003359 ORTHO05D004472 2.4e-79 299.3 207 72.5
Lalb_Chr23g0277621 Lupinus albus HOM05D003359 ORTHO05D004472 5.9e-78 294.7 208 68.3
Glyma.05G174200 Glycine max HOM05D003359 ORTHO05D004472 7.9e-75 284.3 209 68.9
Glyma.08G131400 Glycine max HOM05D003359 ORTHO05D004472 1.0e-74 283.9 209 69.4
arahy.Tifrunner.gnm1.ann1.6M8RVH Arachis hypogaea HOM05D003359 ORTHO05D004472 3.3e-73 278.9 212 66.5
TPR.G15855 Trifolium pratense HOM05D003359 ORTHO05D004472 4.4e-73 278.5 181 75.7
Lj4g0008357 Lotus japonicus HOM05D003359 ORTHO05D004472 5.7e-73 278.1 206 68.4
arahy.Tifrunner.gnm1.ann1.9A08C8 Arachis hypogaea HOM05D003359 ORTHO05D004472 2.0e-70 269.6 218 62.8
Phvul.002G259200 Phaseolus vulgaris HOM05D003359 ORTHO05D004472 1.3e-69 266.9 207 66.2
Medtr2g096530 Medicago truncatula HOM05D003359 ORTHO05D004472 1.7e-69 266.5 206 66.0
Ca_17782_v3 Cicer arietinum L. HOM05D003359 ORTHO05D004472 4.7e-67 258.5 211 64.9
Medtr8g089745 Medicago truncatula HOM05D003359 ORTHO05D004472 1.5e-65 253.4 215 61.9
TPR.G6223 Trifolium pratense HOM05D003359 ORTHO05D004472 2.6e-65 252.7 214 61.7
Medtr8g089740 Medicago truncatula HOM05D003359 ORTHO05D004472 3.8e-61 238.8 212 56.6
Psat7g058680 Pisum sativum HOM05D003359 ORTHO05D004472 4.2e-60 235.3 209 58.9
QL03p057181 Quercus lobata HOM05D003359 ORTHO05D004472 5.5e-60 235.0 204 59.3
Cfa009233 Carpinus fangiana HOM05D003359 ORTHO05D004472 2.7e-59 232.6 206 58.7
CiPaw.05G179800 Carya illinoinensis HOM05D003359 ORTHO05D004472 2.3e-58 229.6 214 52.3
QL03p057173 Quercus lobata HOM05D003359 ORTHO05D004472 4.0e-58 228.8 220 56.4
CANSAT01G0511 Cannabis sativa HOM05D003359 ORTHO05D004472 6.8e-58 228.0 207 57.5
TAR622G1186 Trochodendron aralioides HOM05D003359 ORTHO05D004472 1.2e-57 227.3 215 52.6
RcHm_v2.0_Chr4g0433401 Rosa chinensis HOM05D003359 ORTHO05D004472 1.5e-57 226.9 210 55.7
Prupe.1G247000 Prunus persica HOM05D003359 ORTHO05D004472 2.6e-57 226.1 212 55.7
CiPaw.11G025500 Carya illinoinensis HOM05D003359 ORTHO05D004472 7.5e-57 224.6 214 51.4
Thecc.02G263100 Theobroma cacao HOM05D003359 ORTHO05D004472 1.7e-56 223.4 212 53.8
FAN12G3248 Fragaria x ananassa HOM05D003359 ORTHO05D004472 6.3e-56 221.5 210 55.2
GSVIVG01000554001 Vitis vinifera HOM05D003359 ORTHO05D005275 8.3e-56 221.1 207 52.7
arahy.Tifrunner.gnm1.ann1.JIIR6A Arachis hypogaea HOM05D003359 ORTHO05D004472 1.4e-55 220.3 209 56.0
FvH4_4g25930 Fragaria vesca HOM05D003359 ORTHO05D004472 1.4e-55 220.3 210 55.2
Actinidia37443 Actinidia chinensis HOM05D003359 ORTHO05D004472 1.8e-55 219.9 204 52.9
PSO478G4543 Papaver somniferum HOM05D003359 ORTHO05D004472 1.8e-55 219.9 209 51.7
FAN12G2341 Fragaria x ananassa HOM05D003359 ORTHO05D004472 2.4e-55 219.5 210 54.8
FAN07G2501 Fragaria x ananassa HOM05D003359 ORTHO05D004472 4.1e-55 218.8 210 54.8
PSO017G1803 Papaver somniferum HOM05D003359 ORTHO05D004472 9.1e-55 217.6 209 51.2
Atru.chr11.2161 Acer truncatum HOM05D003359 ORTHO05D004472 1.2e-54 217.2 212 51.9
Duzib251G0748 Durio zibethinus HOM05D003359 ORTHO05D004472 1.0e-53 214.2 209 51.7
MD16G1099400 Malus domestica HOM05D003359 ORTHO05D004472 1.0e-53 214.2 210 53.3
MD13G1098400 Malus domestica HOM05D003359 ORTHO05D004472 3.8e-53 212.2 211 52.1
Potri.010G048400 Populus trichocarpa HOM05D003359 ORTHO05D004472 5.0e-53 211.8 213 49.3
Ciclev10030938m.g Citrus clementina HOM05D003359 ORTHO05D004472 1.5e-52 210.3 202 54.5
Lj3A1060T75 Lonicera japonica HOM05D003359 ORTHO05D004472 1.5e-52 210.3 211 52.6
TPR.G6289 Trifolium pratense HOM05D003359 ORTHO05D004472 1.5e-52 210.3 217 54.4
CSS0009419 Camellia sinensis var. sinensis HOM05D003359 ORTHO05D004472 1.9e-52 209.9 213 51.2
Gorai.005G176600 Gossypium raimondii HOM05D003359 ORTHO05D004472 7.2e-52 208.0 210 51.0
MD13G1098300 Malus domestica HOM05D003359 ORTHO05D004472 7.2e-52 208.0 212 50.5
Sc14g0008780 Simmondsia chinensis HOM05D003359 ORTHO05D004472 7.2e-52 208.0 213 51.2
Aqoxy5G03712 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 9.4e-52 207.6 216 53.2
Potri.010G048300 Populus trichocarpa HOM05D003359 ORTHO05D004472 9.4e-52 207.6 210 48.1
Gohir.A03G133100 Gossypium hirsutum HOM05D003359 ORTHO05D004472 1.2e-51 207.2 207 51.2
Gohir.D02G157400 Gossypium hirsutum HOM05D003359 ORTHO05D004472 2.7e-51 206.1 207 50.7
Eucgr.H02479 Eucalyptus grandis HOM05D003359 ORTHO05D004472 3.6e-51 205.7 204 51.0
Nn4g22564 Nelumbo nucifera HOM05D003359 ORTHO05D004472 3.6e-51 205.7 208 51.4
Cpa.g.sc33.46 Carica papaya HOM05D003359 ORTHO05D004472 8.0e-51 204.5 208 52.4
Dinv14737 Davidia involucrata HOM05D003359 ORTHO05D004472 1.8e-50 203.4 184 55.4
Eucgr.H02477 Eucalyptus grandis HOM05D003359 ORTHO05D004472 7.5e-49 198.0 210 48.1
Eucgr.H02480 Eucalyptus grandis HOM05D003359 ORTHO05D004472 9.8e-49 197.6 201 49.3
TWI18G0898 Tripterygium wilfordii HOM05D003359 ORTHO05D004472 3.7e-48 195.7 204 50.5
Haze_07805 Corylus avellana HOM05D003359 ORTHO05D004472 1.1e-47 194.1 210 50.0
TWI36G1577 Tripterygium wilfordii HOM05D003359 ORTHO05D004472 1.4e-47 193.7 209 48.8
Potri.008G185300 Populus trichocarpa HOM05D003359 ORTHO05D004472 1.8e-47 193.4 210 48.6
Eucgr.H02478 Eucalyptus grandis HOM05D003359 ORTHO05D004472 2.4e-47 193.0 201 48.8
HanXRQChr08g0208381 Helianthus annuus HOM05D003359 ORTHO05D004472 2.4e-47 193.0 205 50.7
DCAR_029363 Daucus carota HOM05D003359 ORTHO05D004472 5.4e-47 191.8 205 49.8
AUR62005500 Chenopodium quinoa HOM05D003359 ORTHO05D004472 1.2e-46 190.7 203 48.3
Aqoxy5G03710 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 1.6e-46 190.3 202 48.5
AUR62024240 Chenopodium quinoa HOM05D003359 ORTHO05D004472 2.0e-46 189.9 203 48.3
ECA233G4229 Erigeron canadensis HOM05D003359 ORTHO05D004472 2.0e-46 189.9 210 48.6
PGR119G1467 Punica granatum HOM05D003359 ORTHO05D004472 3.5e-46 189.1 217 46.1
Oeu057546.1 Olea europaea HOM05D003359 ORTHO05D004472 5.9e-46 188.3 202 50.5
Nn3g16675 Nelumbo nucifera HOM05D003359 ORTHO05D004472 1.3e-45 187.2 210 49.0
BcaC03g17337 Brassica carinata HOM05D003359 ORTHO05D004472 2.3e-45 186.4 211 48.3
C02p52860 Brassica napus HOM05D003359 ORTHO05D004472 2.3e-45 186.4 211 48.3
BolC2t11365H Brassica oleracea HOM05D003359 ORTHO05D004472 8.6e-45 184.5 212 47.2
BcaB07g30230 Brassica carinata HOM05D003359 ORTHO05D004472 1.9e-44 183.3 203 49.3
MBI19_g09304_MAGBIO Magnolia biondii HOM05D003359 ORTHO05D004472 1.9e-44 183.3 202 47.0
arahy.Tifrunner.gnm1.ann1.5678GR Arachis hypogaea HOM05D003359 ORTHO05D004472 9.5e-44 181.0 192 53.6
Carub.0005s0430 Capsella rubella HOM05D003359 ORTHO05D004472 9.5e-44 181.0 203 47.8
Aa31LG2G6140 Aethionema arabicum HOM05D003359 ORTHO05D006537 2.8e-43 179.5 203 45.3
Aqoxy3G01254 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 2.8e-43 179.5 212 46.2
AL5G15150 Arabidopsis lyrata HOM05D003359 ORTHO05D004472 8.0e-43 177.9 203 47.8
Thhalv10003806m.g Eutrema salsugineum HOM05D003359 ORTHO05D004472 8.0e-43 177.9 203 47.3
Sp2g15530 Schrenkiella parvula HOM05D003359 ORTHO05D004472 1.0e-42 177.6 206 46.6
AT3G26380 Arabidopsis thaliana HOM05D003359 ORTHO05D004472 1.4e-42 177.2 212 46.2
PGSC0003DMG400011728 Solanum tuberosum HOM05D003359 ORTHO05D004472 1.8e-42 176.8 204 47.1
A02p34540 Brassica napus HOM05D003359 ORTHO05D004472 3.0e-42 176.0 202 48.5
BraA02t08464Z Brassica rapa HOM05D003359 ORTHO05D004472 3.0e-42 176.0 202 47.5
Sed0021427 Sechium edule HOM05D003359 ORTHO05D004472 5.2e-42 175.3 205 45.4
CARHR147390 Cardamine hirsuta HOM05D003359 ORTHO05D004472 8.9e-42 174.5 206 46.6
THA.LOC104805279 Tarenaya hassleriana HOM05D003359 ORTHO05D004472 2.0e-41 173.3 207 45.4
Manes.13G022100 Manihot esculenta HOM05D003359 ORTHO05D004472 2.6e-41 172.9 180 48.3
CsaV3_2G025010 Cucumis sativus L. HOM05D003359 ORTHO05D004472 3.7e-40 169.1 202 44.1
Sopen05g008640 Solanum pennellii HOM05D003359 ORTHO05D004472 8.3e-40 167.9 204 46.6
ATR0824G097 Amborella trichopoda HOM05D003359 ORTHO05D004472 4.1e-39 165.6 212 43.4
MELO3C010698.2 Cucumis melo HOM05D003359 ORTHO05D004472 4.1e-39 165.6 202 43.1
Solyc05g013720.3 Solanum lycopersicum HOM05D003359 ORTHO05D004472 5.4e-39 165.2 204 45.6
EL10Ac6g13871 Beta vulgaris HOM05D003359 ORTHO05D004472 1.6e-38 163.7 205 45.9
MSTRG.7949 Avicennia marina HOM05D003359 ORTHO05D004472 2.7e-38 162.9 203 45.8
Peaxi162Scf00128g00456 Petunia axillaris HOM05D003359 ORTHO05D004472 4.6e-38 162.2 202 42.1
Sabra08G0140300 Salix brachista HOM05D003359 ORTHO05D006537 3.0e-37 159.5 210 42.4
Sabra10G0020500 Salix brachista HOM05D003359 ORTHO05D006537 1.9e-36 156.8 210 41.0
Migut.K00614 Erythranthe guttata HOM05D003359 ORTHO05D004472 3.1e-34 149.4 189 46.6
Os01g0518500 Oryza sativa ssp. japonica HOM05D003359 ORTHO05D004472 8.9e-34 147.9 212 40.1
Zm00001eb409230 Zea mays HOM05D003359 ORTHO05D004472 5.8e-33 145.2 208 39.4
Glyma.14G049900 Glycine max HOM05D003359 ORTHO05D004472 7.5e-33 144.8 201 44.3
CDE02G4268 Ceratophyllum demersum HOM05D003359 ORTHO05D004472 1.1e-31 141.0 181 43.1
unitig_22.g6428 Utricularia gibba HOM05D003359 ORTHO05D004472 2.4e-31 139.8 178 42.7
Nitab4.5_0002787g0030 Nicotiana tabacum HOM05D003359 ORTHO05D004472 7.0e-31 138.3 208 38.0
vmacro16179 Vaccinium macrocarpon HOM05D003359 ORTHO05D004472 1.2e-30 137.5 208 41.3
Glyma.02G267700 Glycine max HOM05D003359 ORTHO05D004472 2.7e-30 136.3 200 42.5
Phvul.008G214500 Phaseolus vulgaris HOM05D003359 ORTHO05D004472 2.7e-30 136.3 201 43.8
Lsat_1_v5_gn_8_152721 Lactuca sativa HOM05D003359 ORTHO05D004472 5.6e-28 128.6 185 40.5
SEGI_30194 Sequoiadendron giganteum HOM05D003359 ORTHO05D004472 2.8e-27 126.3 204 34.3
Haze_12269 Corylus avellana HOM05D003359 ORTHO05D006537 1.3e-24 117.5 176 41.5
Cc11_g15940 Coffea canephora HOM05D003359 ORTHO05D020488 5.4e-23 112.1 130 41.5
Duzib268G0493 Durio zibethinus HOM05D003359 ORTHO05D004472 5.4e-23 112.1 224 36.6
ClCG08G017630 Citrullus lanatus HOM05D003359 ORTHO05D004472 2.1e-19 100.1 148 36.5
Hund06039 Selenicereus undatus HOM05D003359 ORTHO05D004472 2.1e-19 100.1 177 35.0
SGA_v2.0_scaffold71G23972 Striga asiatica HOM05D003359 ORTHO05D004472 5.2e-18 95.5 139 38.1
Medtr8g089725 Medicago truncatula HOM05D003359 ORTHO05D004472 2.0e-17 93.6 72 62.5
Medtr8g089735 Medicago truncatula HOM05D003359 ORTHO05D004472 2.0e-17 93.6 72 62.5
RcHm_v2.0_Chr3g0454341 Rosa chinensis HOM05D003359 ORTHO05D004472 4.9e-16 89.0 51 76.5
FAN14G4241 Fragaria x ananassa HOM05D003359 ORTHO05D004472 1.9e-15 87.0 51 76.5
FAN05G3491 Fragaria x ananassa HOM05D003359 ORTHO05D004472 2.4e-15 86.7 51 76.5
Lj6C814T12 Lonicera japonica HOM05D003359 ORTHO05D004472 9.2e-15 84.7 54 68.5
QL03p056989 Quercus lobata HOM05D003359 ORTHO05D004472 9.2e-15 84.7 51 76.5
Ciclev10003125m.g Citrus clementina HOM05D003359 ORTHO05D004472 1.2e-14 84.3 49 75.5
QL03p057135 Quercus lobata HOM05D003359 ORTHO05D004472 4.6e-14 82.4 53 73.6
Ciclev10033489m.g Citrus clementina HOM05D003359 ORTHO05D004472 6.0e-14 82.0 49 75.5
Mapoly0033s0125 Marchantia polymorpha HOM05D003359 ORTHO05D004472 6.0e-14 82.0 211 30.3
QL03p057097 Quercus lobata HOM05D003359 ORTHO05D004472 6.0e-14 82.0 53 75.5
COL.COLO4_23483 Corchorus olitorius HOM05D003359 ORTHO05D004472 7.8e-14 81.6 45 82.2
FAN14G5485 Fragaria x ananassa HOM05D003359 ORTHO05D004472 1.0e-13 81.3 74 56.8
arahy.Tifrunner.gnm1.ann1.FF27K2 Arachis hypogaea HOM05D000552 ORTHO05D083865 2.3e-13 80.1 55 69.1
FAN05G1630 Fragaria x ananassa HOM05D003359 ORTHO05D004472 2.3e-13 80.1 74 55.4
SalBow2G2300 Salvia bowleyana HOM05D003359 ORTHO05D020488 2.3e-13 80.1 69 56.5
HPP92_023372 Vanilla planifolia HOM05D003359 ORTHO05D004472 2.3e-13 80.1 51 70.6
FAN09G1504 Fragaria x ananassa HOM05D003359 ORTHO05D004472 5.1e-13 79.0 45 80.0
Nitab4.5_0000229g0100 Nicotiana tabacum HOM05D003359 ORTHO05D004472 5.1e-13 79.0 103 42.7
CAN.G272.4 Capsicum annuum HOM05D003359 ORTHO05D004472 6.6e-13 78.6 50 66.0
SalBow2G3613 Salvia bowleyana HOM05D003359 ORTHO05D004472 6.6e-13 78.6 45 77.8
HPP92_023360 Vanilla planifolia HOM05D003359 ORTHO05D004472 6.6e-13 78.6 77 50.6
HPP92_023373 Vanilla planifolia HOM05D003359 ORTHO05D004472 6.6e-13 78.6 77 50.6
arahy.Tifrunner.gnm1.ann1.MI3564 Arachis hypogaea HOM05D003359 ORTHO05D086471 1.5e-12 77.4 53 69.8
Cc11_g15950 Coffea canephora HOM05D003359 ORTHO05D004472 1.9e-12 77.0 45 75.6
arahy.Tifrunner.gnm1.ann1.H4Q06R Arachis hypogaea HOM05D003359 ORTHO05D004472 4.3e-12 75.9 43 79.1
arahy.Tifrunner.gnm1.ann1.YQLI8B Arachis hypogaea HOM05D000532 ORTHO05D082908 5.6e-12 75.5 53 67.9
LjContig00029g0017310 Lotus japonicus HOM05D003359 ORTHO05D004472 5.6e-12 75.5 54 66.7
SMO164G0149 Selaginella moellendorffii HOM05D003359 ORTHO05D004472 5.6e-12 75.5 203 31.5
QL03p057114 Quercus lobata HOM05D003359 ORTHO05D020488 4.7e-11 72.4 48 72.9
QL03p057161 Quercus lobata HOM05D003359 ORTHO05D020488 4.7e-11 72.4 48 72.9
SMO356G0596 Selaginella moellendorffii HOM05D003359 ORTHO05D004472 4.7e-11 72.4 59 57.6
SEGI_05831 Sequoiadendron giganteum HOM05D003359 ORTHO05D004472 6.9e-10 68.6 52 57.7
SMO147G0306 Selaginella moellendorffii HOM05D003359 ORTHO05D004472 4.4e-09 65.9 45 66.7
TWI36G0326 Tripterygium wilfordii HOM05D003359 ORTHO05D004472 7.6e-09 65.1 45 60.0
SEGI_37368 Sequoiadendron giganteum HOM05D003359 ORTHO05D004472 9.9e-09 64.7 45 64.4
Gohir.A03G133105 Gossypium hirsutum HOM05D003359 ORTHO05D217839 2.2e-08 63.5 39 66.7
SMO238G0039 Selaginella moellendorffii HOM05D003359 ORTHO05D004472 2.9e-08 63.2 43 60.5
Pp3c11_18080 Physcomitrium patens HOM05D003359 ORTHO05D004472 4.9e-08 62.4 228 24.1
AagrBONN_evm.TU.Sc2ySwM_362.590 Anthoceros agrestis HOM05D003359 ORTHO05D004472 6.4e-08 62.0 210 28.6
Lalb_Chr04g0250051 Lupinus albus HOM05D003359 ORTHO05D004472 1.1e-07 61.2 46 67.4
Lalb_Chr04g0250081 Lupinus albus HOM05D003359 ORTHO05D004472 1.9e-07 60.5 46 67.4
Lalb_Chr04g0250071 Lupinus albus HOM05D003359 ORTHO05D004472 3.2e-07 59.7 46 65.2
AagrBONN_evm.TU.Sc2ySwM_228.5836 Anthoceros agrestis HOM05D003359 ORTHO05D004472 1.2e-06 57.8 45 55.6
Mapoly0016s0175 Marchantia polymorpha HOM05D003359 ORTHO05D004472 1.6e-06 57.4 45 55.6
ATR0824G255 Amborella trichopoda HOM05D003359 ORTHO05D004472 2.7e-06 56.6 49 53.1
Lalb_Chr04g0250101 Lupinus albus HOM05D003359 ORTHO05D004472 2.7e-06 56.6 46 65.2


User provided reference genes

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