Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 1.5e-157 559.7 333 100.0
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 7.3e-152 540.8 333 92.5
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 3.2e-147 525.4 333 90.4
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 7.6e-141 504.2 363 81.8
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 1.5e-136 490.0 333 85.0
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 2.1e-135 486.1 333 85.0
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 6.4e-132 474.6 334 83.5
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 1.0e-129 467.2 329 82.4
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 1.1e-126 457.2 333 80.5
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 1.4e-126 456.8 330 80.6
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 1.2e-125 453.8 331 79.2
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 5.8e-125 451.4 348 77.0
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 1.7e-124 449.9 330 80.6
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 1.4e-123 446.8 330 80.3
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 2.5e-123 446.0 335 80.0
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 4.2e-123 445.3 343 77.6
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 9.3e-123 444.1 330 80.0
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 6.0e-122 441.4 330 79.7
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 7.9e-122 441.0 331 82.8
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 1.3e-121 440.3 330 78.8
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 1.8e-121 439.9 330 77.9
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 3.9e-121 438.7 330 77.6
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 1.5e-120 436.8 333 79.9
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 2.5e-120 436.0 333 81.4
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 7.4e-120 434.5 331 77.0
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 7.4e-120 434.5 331 78.5
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 7.4e-120 434.5 330 77.9
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 1.6e-119 433.3 334 78.1
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 4.8e-119 431.8 330 77.6
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 6.3e-119 431.4 330 77.0
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 1.2e-117 427.2 331 76.1
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.5e-117 426.8 330 76.4
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 2.6e-117 426.0 330 77.3
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 4.5e-117 425.2 330 77.3
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 5.9e-117 424.9 330 77.0
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 7.7e-117 424.5 330 74.8
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 1.0e-116 424.1 325 77.5
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 1.3e-116 423.7 289 81.7
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 2.9e-116 422.5 330 75.8
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 2.9e-116 422.5 337 76.0
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 5.0e-116 421.8 335 73.1
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 6.5e-116 421.4 331 76.1
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 1.4e-115 420.2 331 76.4
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 1.9e-115 419.9 290 82.8
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 2.5e-115 419.5 337 78.0
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.5e-115 419.5 332 75.9
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 3.2e-115 419.1 330 74.5
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 3.2e-115 419.1 330 74.2
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 3.2e-115 419.1 293 84.6
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 4.2e-115 418.7 330 75.2
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 5.5e-115 418.3 289 84.1
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 5.5e-115 418.3 291 82.8
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 5.5e-115 418.3 290 82.8
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 7.2e-115 417.9 330 76.4
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 7.2e-115 417.9 339 75.2
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 1.2e-114 417.2 332 76.8
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 1.2e-114 417.2 287 84.3
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 1.2e-114 417.2 287 84.3
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 1.6e-114 416.8 293 80.9
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 2.1e-114 416.4 339 74.6
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 2.1e-114 416.4 330 74.5
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 2.1e-114 416.4 333 75.7
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 2.1e-114 416.4 330 76.4
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 2.7e-114 416.0 329 76.6
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.7e-114 416.0 330 74.5
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 3.6e-114 415.6 332 75.3
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 3.6e-114 415.6 331 74.3
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 6.1e-114 414.8 329 76.6
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 7.9e-114 414.5 333 76.3
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 7.9e-114 414.5 333 76.3
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 7.9e-114 414.5 330 73.9
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 3.0e-113 412.5 330 73.6
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 6.7e-113 411.4 330 73.3
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 2.0e-112 409.8 286 81.5
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 2.0e-112 409.8 290 81.7
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 2.5e-112 409.5 327 74.6
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 2.5e-112 409.5 286 82.9
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 2.5e-112 409.5 330 73.9
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 3.3e-112 409.1 332 75.9
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.3e-112 409.1 285 81.8
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 4.3e-112 408.7 285 81.4
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 4.3e-112 408.7 322 76.1
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 4.3e-112 408.7 286 81.8
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 7.4e-112 407.9 332 72.9
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 7.4e-112 407.9 330 74.8
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 7.4e-112 407.9 330 74.8
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 7.4e-112 407.9 330 73.0
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 7.4e-112 407.9 330 72.4
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 1.3e-111 407.1 296 77.7
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 1.3e-111 407.1 286 81.1
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 1.7e-111 406.8 331 72.5
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 1.7e-111 406.8 329 72.6
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 1.7e-111 406.8 331 74.3
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 2.2e-111 406.4 285 81.8
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 6.3e-111 404.8 337 71.8
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 6.3e-111 404.8 291 80.4
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 6.3e-111 404.8 285 80.4
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 8.2e-111 404.4 281 82.2
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 8.2e-111 404.4 286 80.4
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 1.1e-110 404.1 331 72.2
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 1.1e-110 404.1 385 67.0
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 1.4e-110 403.7 285 80.7
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 1.4e-110 403.7 330 72.7
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 2.4e-110 402.9 330 72.4
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 4.1e-110 402.1 287 81.9
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 9.1e-110 401.0 327 74.9
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.2e-109 400.6 287 81.5
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 1.5e-109 400.2 283 81.3
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 2.6e-109 399.4 287 81.2
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 3.4e-109 399.1 332 70.5
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 4.5e-109 398.7 290 78.6
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.0e-108 397.5 281 81.9
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.3e-108 397.1 256 89.5
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 2.2e-108 396.4 283 80.6
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 2.2e-108 396.4 283 80.6
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 6.5e-108 394.8 279 80.6
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 1.4e-107 393.7 283 80.2
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 2.5e-107 392.9 334 73.1
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 4.2e-107 392.1 326 72.1
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 4.2e-107 392.1 326 72.1
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 1.6e-106 390.2 252 88.1
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 2.7e-106 389.4 334 73.4
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 6.1e-106 388.3 275 80.7
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 1.8e-105 386.7 275 80.7
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 5.1e-105 385.2 307 73.6
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 6.7e-105 384.8 328 70.4
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 8.8e-105 384.4 332 70.2
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 3.3e-104 382.5 332 69.9
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 3.3e-104 382.5 264 83.7
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.4e-104 382.1 309 66.7
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 5.7e-104 381.7 266 83.5
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 9.7e-104 380.9 280 79.3
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 1.7e-103 380.2 285 80.7
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 1.2e-101 374.0 265 83.4
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.3e-100 370.5 253 73.9
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 2.9e-100 369.4 304 72.4
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 8.5e-100 367.9 310 73.5
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 2.5e-99 366.3 280 75.4
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 2.1e-98 363.2 262 80.2
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 8.0e-98 361.3 270 74.8
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 1.5e-96 357.1 266 77.1
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 7.4e-96 354.8 231 90.0
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 6.3e-95 351.7 231 90.9
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 3.1e-94 349.4 231 86.6
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 4.1e-94 349.0 281 73.7
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.0e-88 330.1 330 55.8
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 9.1e-86 321.2 252 73.0
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.7e-84 317.0 290 68.6
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.7e-84 317.0 290 68.6
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 4.2e-83 312.4 271 64.6
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 6.3e-79 298.5 247 68.8
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 8.3e-79 298.1 364 57.4
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 1.8e-78 297.0 260 74.2
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.2e-77 294.3 252 65.1
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 1.6e-77 293.9 238 78.6
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 1.6e-77 293.9 250 60.4
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 5.9e-77 292.0 252 60.7
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 2.9e-76 289.7 196 87.2
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 5.0e-76 288.9 216 80.1
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 3.6e-74 282.7 249 79.5
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 6.2e-58 228.8 287 45.6
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 5.2e-57 225.7 149 75.8
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 6.4e-55 218.8 271 50.2
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 3.9e-52 209.5 125 81.6
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.2e-50 204.5 124 80.6
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 2.1e-50 203.8 149 71.8
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 1.2e-45 188.0 159 77.4
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 6.0e-45 185.7 113 84.1
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 8.6e-44 181.8 169 74.6
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 8.7e-36 155.2 266 42.5
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 1.9e-35 154.1 104 79.8
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 4.0e-33 146.4 92 79.3
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 1.7e-31 141.0 108 76.9
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 1.4e-30 137.9 86 79.1
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 8.1e-26 122.1 90 72.2
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 1.6e-21 107.8 149 56.4
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 4.8e-18 96.3 150 54.0
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 1.4e-17 94.7 107 67.3
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 9.0e-17 92.0 122 50.0
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 4.5e-16 89.7 83 79.5
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 1.9e-11 74.3 93 45.2
MCO02G269 Micromonas commoda HOM05D066820 ORTHO05D004315 9.3e-06 55.5 95 33.7


User provided reference genes

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