Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G216300 Glycine max HOM05D003241 ORTHO05D003812 2.2e-194 682.2 366 100.0
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 3.2e-148 528.9 303 94.4
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 1.9e-145 519.6 302 93.4
VMungo1127G0135 Vigna mungo HOM05D003241 ORTHO05D003812 1.9e-140 503.1 303 89.4
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 3.0e-138 495.7 303 89.1
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 1.5e-134 483.4 303 85.8
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 6.4e-133 478.0 304 85.2
TPR.G2613 Trifolium pratense HOM05D003241 ORTHO05D003812 6.4e-133 478.0 304 85.9
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 1.1e-132 477.2 304 84.9
Psat0s3089g0040 Pisum sativum HOM05D003241 ORTHO05D003812 2.4e-132 476.1 303 85.5
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 4.3e-129 465.3 303 82.5
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 1.3e-128 463.8 303 82.8
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 1.6e-128 463.4 305 83.9
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 8.1e-128 461.1 303 81.8
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 1.7e-117 426.8 303 75.6
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 9.3e-116 421.0 304 74.7
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 3.5e-115 419.1 304 74.3
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 7.9e-115 417.9 305 74.1
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 1.0e-114 417.5 305 75.1
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 3.9e-114 415.6 303 73.9
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 1.3e-112 410.6 303 73.9
QL11p041824 Quercus lobata HOM05D003241 ORTHO05D003812 1.3e-112 410.6 304 72.7
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 2.1e-112 409.8 304 74.7
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 8.1e-112 407.9 303 73.6
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 8.1e-112 407.9 303 73.6
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 5.8e-110 401.7 331 68.3
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 3.8e-109 399.1 304 71.4
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 6.5e-109 398.3 307 73.0
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 6.5e-109 398.3 307 73.0
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 8.4e-109 397.9 303 71.0
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 1.9e-108 396.7 305 71.5
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 5.5e-108 395.2 304 70.4
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 6.0e-107 391.7 304 69.7
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 1.3e-106 390.6 305 70.5
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 3.9e-106 389.0 304 69.4
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 6.7e-106 388.3 306 69.6
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 1.1e-105 387.5 306 69.0
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 4.3e-105 385.6 285 73.7
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 8.2e-104 381.3 304 67.8
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 1.4e-103 380.6 304 67.8
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 5.3e-103 378.6 307 69.1
Sc22g0003580 Simmondsia chinensis HOM05D003241 ORTHO05D003812 2.6e-102 376.3 310 66.8
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 4.5e-102 375.6 307 68.7
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 1.7e-101 373.6 305 68.9
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 2.9e-101 372.9 298 66.8
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 6.5e-101 371.7 305 71.1
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 5.5e-100 368.6 298 66.8
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 4.6e-99 365.5 305 65.9
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 6.1e-99 365.2 304 64.8
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 6.1e-99 365.2 304 64.8
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 6.1e-99 365.2 305 67.5
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 1.3e-98 364.0 303 66.3
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 1.8e-98 363.6 303 65.0
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 1.8e-98 363.6 302 64.6
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 3.0e-98 362.8 302 65.6
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 5.1e-98 362.1 302 64.9
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 5.1e-98 362.1 303 68.3
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 3.3e-97 359.4 304 67.1
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 4.3e-97 359.0 305 65.9
CSS0028609 Camellia sinensis var. sinensis HOM05D003241 ORTHO05D003812 7.4e-97 358.2 305 64.9
Actinidia38515 Actinidia chinensis HOM05D003241 ORTHO05D003812 9.0e-95 351.3 305 64.6
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 2.2e-93 346.7 303 64.4
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 6.5e-93 345.1 303 64.4
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 8.5e-93 344.7 303 64.7
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 2.5e-92 343.2 304 63.8
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 3.2e-92 342.8 303 64.4
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 1.2e-91 340.9 304 63.8
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 1.2e-91 340.9 305 63.9
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 1.2e-91 340.9 304 63.8
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 2.7e-91 339.7 304 63.5
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 4.6e-91 339.0 305 63.6
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 3.0e-90 336.3 305 63.3
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 3.9e-90 335.9 303 63.4
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 8.8e-90 334.7 304 59.9
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 7.4e-89 331.6 305 62.3
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 1.7e-88 330.5 305 62.3
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 4.8e-88 328.9 305 61.6
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 6.3e-88 328.6 304 60.5
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 2.4e-87 326.6 307 62.5
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 5.3e-87 325.5 303 59.4
TPR.G37958 Trifolium pratense HOM05D003241 ORTHO05D003812 6.9e-87 325.1 294 66.7
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 1.2e-86 324.3 307 62.2
Sp6g27340 Schrenkiella parvula HOM05D003241 ORTHO05D003812 3.4e-86 322.8 305 60.3
ClCG08G000520 Citrullus lanatus HOM05D003241 ORTHO05D003812 1.0e-85 321.2 317 61.5
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 1.4e-84 317.4 303 60.1
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 3.2e-84 316.2 305 61.0
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 3.6e-83 312.8 305 59.0
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 1.8e-82 310.5 304 59.9
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 3.9e-82 309.3 305 59.7
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 3.9e-82 309.3 305 58.7
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 1.5e-81 307.4 305 60.3
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 5.7e-81 305.4 304 58.9
CDE06G2045 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 3.7e-80 302.8 304 57.9
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 3.7e-80 302.8 305 59.3
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 3.7e-80 302.8 305 59.3
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.1e-79 301.2 305 59.0
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 4.1e-79 299.3 305 57.0
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 4.1e-79 299.3 304 56.9
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 7.0e-79 298.5 305 59.0
QL09p049206 Quercus lobata HOM05D003241 ORTHO05D003812 9.1e-79 298.1 207 75.8
QL09p049197 Quercus lobata HOM05D003241 ORTHO05D003812 2.6e-78 296.6 285 58.6
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 3.5e-78 296.2 305 58.4
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 3.5e-78 296.2 306 55.9
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.7e-77 293.9 305 57.7
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 3.8e-77 292.7 274 61.3
CDE03G0251 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 1.5e-76 290.8 304 56.6
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 1.5e-76 290.8 304 56.2
FAN22G0104 Fragaria x ananassa HOM05D003241 ORTHO05D003812 9.4e-76 288.1 312 56.4
MBI14_g36867_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 6.1e-75 285.4 252 63.9
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 2.3e-74 283.5 305 52.1
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 4.4e-73 279.3 307 56.7
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 5.7e-73 278.9 306 55.6
SalBow6G1729 Salvia bowleyana HOM05D003241 ORTHO05D003812 8.2e-72 275.0 261 61.3
SalBow6G5488 Salvia bowleyana HOM05D003241 ORTHO05D003812 8.2e-72 275.0 261 61.3
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 1.1e-71 274.6 305 54.8
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 1.2e-70 271.2 303 55.8
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 1.9e-68 263.8 306 52.3
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 3.2e-68 263.1 331 48.3
Solyc11g008470.2 Solanum lycopersicum HOM05D003241 ORTHO05D003812 1.4e-63 247.7 249 57.8
Rhsim01G0112900 Rhododendron simsii HOM05D003241 ORTHO05D003812 3.1e-63 246.5 254 61.0
BcaC04g18847 Brassica carinata HOM05D003241 ORTHO05D003812 9.5e-60 235.0 213 60.6
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 1.9e-52 210.7 266 48.5
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 5.2e-50 202.6 318 40.6
AagrBONN_evm.TU.Sc2ySwM_344.1153__1154 Anthoceros agrestis HOM05D003241 ORTHO05D003812 4.4e-49 199.5 313 43.8
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 5.7e-49 199.1 308 42.5
Eucgr.G01007 Eucalyptus grandis HOM05D003241 ORTHO05D003812 2.3e-45 187.2 233 54.9
SMO361G0171 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 9.8e-41 171.8 305 38.4
CBR_g32002 Chara braunii HOM05D003241 ORTHO05D003812 1.1e-39 168.3 342 38.9
SHI33105 Sapria himalayana HOM05D000743 ORTHO05D000580 2.4e-39 167.2 302 38.4
Lj1A444T9 Lonicera japonica HOM05D003241 ORTHO05D003812 2.8e-35 153.7 171 53.2
Lju445A0T12 Lonicera japonica HOM05D003241 ORTHO05D003812 9.2e-31 138.7 170 50.0
Psat6g151960 Pisum sativum HOM05D003241 ORTHO05D003812 7.8e-30 135.6 115 72.2
Hma1.2p1_0148F.1_g066050 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 4.4e-25 119.8 183 47.0
COL.COLO4_13873 Corchorus olitorius HOM05D003241 ORTHO05D003812 4.9e-24 116.3 305 33.8
CARHR196420 Cardamine hirsuta HOM05D003241 ORTHO05D003812 2.1e-22 110.9 92 63.0
vmacro00335 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 9.6e-20 102.1 303 31.0
Sopen06g019980 Solanum pennellii HOM05D003241 ORTHO05D003812 1.8e-18 97.8 70 70.0
MCO08G320 Micromonas commoda HOM05D003241 ORTHO05D003812 3.1e-18 97.1 323 31.0
Potri.003G148501 Populus trichocarpa HOM05D003241 ORTHO05D003812 4.0e-18 96.7 173 43.4
Lj6g0011042 Lotus japonicus HOM05D003241 ORTHO05D003812 4.9e-16 89.7 76 67.1
AagrBONN_evm.TU.Sc2ySwM_344.222 Anthoceros agrestis HOM05D003241 ORTHO05D003812 4.2e-15 86.7 181 37.6
AagrBONN_evm.TU.Sc2ySwM_344.225 Anthoceros agrestis HOM05D003241 ORTHO05D003812 4.2e-15 86.7 181 37.6
Solyc11g008460.1 Solanum lycopersicum HOM05D003241 ORTHO05D003812 4.2e-15 86.7 57 77.2
Peaxi162Scf00067g00244 Petunia axillaris HOM05D003241 ORTHO05D003812 7.1e-15 85.9 84 58.3
Os02g0511500 Oryza sativa ssp. japonica HOM05D003241 ORTHO05D003812 9.3e-15 85.5 103 51.5
RcHm_v2.0_Chr1g0362541 Rosa chinensis HOM05D003241 ORTHO05D003812 9.3e-15 85.5 56 76.8
PRCOL_00003741 Prasinoderma coloniale HOM05D003241 ORTHO05D003812 1.2e-14 85.1 342 28.4
Eucgr.K00104 Eucalyptus grandis HOM05D002350 ORTHO05D000091 1.5e-12 78.2 77 58.4
Cre03.g156100 Chlamydomonas reinhardtii HOM05D003241 ORTHO05D003812 1.3e-11 75.1 316 28.2
AagrBONN_evm.TU.Sc2ySwM_117.3514 Anthoceros agrestis HOM05D003241 ORTHO05D003812 5.3e-10 69.7 180 37.2
QL04p053119 Quercus lobata HOM05D003241 ORTHO05D003812 1.5e-09 68.2 42 73.8
QL06p040345 Quercus lobata HOM05D003241 ORTHO05D003812 1.5e-09 68.2 42 73.8
Aqoxy2G01894 Aquilegia oxysepala HOM05D000395 ORTHO05D000088 1.2e-06 58.5 70 54.3
Nitab4.5_0014335g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 1.2e-06 58.5 92 45.7


User provided reference genes

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