Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 1.6e-186 656.0 332 100.0
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 2.0e-181 639.0 332 97.3
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 7.3e-176 620.5 332 94.0
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 2.4e-171 605.5 332 92.5
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 5.6e-168 594.3 332 88.9
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 2.1e-167 592.4 332 88.9
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 6.2e-167 590.9 332 89.2
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 2.3e-166 589.0 332 88.6
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 3.4e-165 585.1 333 87.1
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 3.7e-164 581.6 332 86.7
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 2.4e-163 578.9 332 87.0
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 5.0e-161 571.2 332 86.4
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 5.8e-157 557.8 332 84.3
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 4.7e-151 538.1 332 81.9
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 1.7e-148 529.6 334 78.7
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 4.6e-146 521.5 330 78.2
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 1.2e-143 513.5 333 76.3
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 1.6e-143 513.1 333 76.6
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 8.1e-143 510.8 333 77.8
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 6.9e-142 507.7 330 76.1
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 2.0e-141 506.1 332 75.9
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 5.8e-141 504.6 339 76.4
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 9.9e-141 503.8 331 75.5
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 6.4e-140 501.1 333 75.1
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 2.4e-139 499.2 334 77.5
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 3.2e-139 498.8 331 74.9
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.2e-139 498.4 331 74.6
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 9.3e-139 497.3 337 75.7
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 1.2e-138 496.9 330 75.5
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 4.6e-138 495.0 334 74.6
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 7.8e-138 494.2 333 74.8
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 7.8e-138 494.2 333 77.2
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 1.0e-137 493.8 335 75.5
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 3.9e-137 491.9 333 73.6
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.9e-136 489.6 332 73.8
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 2.5e-136 489.2 333 75.1
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 3.3e-136 488.8 333 73.6
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 7.3e-136 487.6 339 76.1
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 9.6e-136 487.3 335 74.9
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 1.6e-135 486.5 331 74.6
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 4.8e-135 485.0 331 75.8
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 4.8e-135 485.0 331 75.8
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 2.4e-134 482.6 334 73.7
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 4.0e-134 481.9 336 73.8
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 5.3e-134 481.5 335 73.7
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 5.3e-134 481.5 318 74.8
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 9.0e-134 480.7 335 72.8
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 3.4e-133 478.8 338 73.4
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 5.8e-133 478.0 338 73.7
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 5.8e-133 478.0 334 71.9
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 5.8e-133 478.0 331 73.7
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 9.9e-133 477.2 335 72.8
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 9.9e-133 477.2 333 71.2
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 1.3e-132 476.9 335 72.8
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.7e-132 476.5 335 72.2
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 2.2e-132 476.1 335 72.5
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 3.8e-132 475.3 335 72.5
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 6.4e-132 474.6 333 73.0
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 1.4e-131 473.4 338 71.9
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 3.2e-131 472.2 333 71.8
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.2e-130 470.3 335 72.2
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.6e-130 469.9 335 71.3
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 4.6e-130 468.4 324 71.9
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 7.9e-130 467.6 333 71.2
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 1.8e-129 466.5 330 69.4
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 2.3e-129 466.1 339 70.5
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 2.3e-129 466.1 339 70.5
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 3.9e-129 465.3 339 71.1
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 6.7e-129 464.5 379 65.4
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 6.7e-129 464.5 334 71.9
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 1.9e-128 463.0 338 68.9
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 4.3e-128 461.8 334 70.7
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 5.6e-128 461.5 341 68.9
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 1.3e-127 460.3 338 68.9
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 2.1e-127 459.5 338 69.2
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 2.1e-127 459.5 338 69.2
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.1e-127 459.5 333 68.8
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 6.2e-127 458.0 334 68.6
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 8.1e-127 457.6 330 68.5
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 1.4e-126 456.8 339 70.5
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 2.4e-126 456.1 338 68.3
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 4.0e-126 455.3 341 71.0
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 9.0e-126 454.1 323 71.5
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 2.0e-125 453.0 354 66.1
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 4.5e-125 451.8 334 69.2
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.9e-124 449.1 330 68.5
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 4.2e-123 445.3 334 69.2
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 4.2e-123 445.3 333 69.4
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 1.2e-122 443.7 340 68.8
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 6.0e-122 441.4 347 69.5
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 7.9e-122 441.0 333 68.8
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 3.9e-121 438.7 339 68.4
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 8.7e-121 437.6 330 69.1
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 8.7e-121 437.6 330 69.1
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 3.3e-120 435.6 339 66.4
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 4.3e-120 435.3 338 68.6
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 9.6e-120 434.1 330 66.1
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 1.6e-119 433.3 334 66.2
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 2.8e-119 432.6 340 67.6
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 1.1e-118 430.6 341 67.7
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 1.1e-115 420.6 339 65.8
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 6.0e-114 414.8 333 66.4
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 1.1e-110 404.1 355 63.7
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 7.6e-109 397.9 358 62.8
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 2.7e-106 389.4 337 62.6
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 1.3e-105 387.1 263 74.5
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 6.7e-105 384.8 353 60.3
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 5.7e-104 381.7 352 59.1
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 4.8e-103 378.6 284 70.4
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 1.2e-101 374.0 321 64.8
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 2.0e-101 373.2 342 58.8
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 1.7e-100 370.2 343 58.9
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 1.6e-98 363.6 328 58.2
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.8e-97 360.1 338 58.3
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 3.9e-97 359.0 354 58.8
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 2.7e-90 336.3 319 57.4
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 2.2e-84 316.6 254 66.1
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.8e-84 315.8 230 70.0
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 5.2e-81 305.4 187 82.4
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.0e-76 291.2 245 64.1
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 4.0e-73 279.3 211 68.2
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 1.2e-72 277.7 365 46.8
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 4.1e-70 269.2 267 59.2
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 2.0e-64 250.4 190 67.9
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 2.3e-60 236.9 382 43.2
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 1.6e-58 230.7 357 44.5
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 3.0e-57 226.5 358 41.6
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 9.8e-56 221.5 363 41.6
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 2.7e-53 213.4 213 54.9
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 1.6e-50 204.1 358 41.3
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 4.4e-48 196.1 223 51.6
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 1.9e-46 190.7 173 53.2
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 6.6e-44 182.2 367 36.5
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.7e-36 157.5 379 33.8
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 1.2e-34 151.4 343 36.7
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 7.1e-30 135.6 106 67.0
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 1.2e-26 124.8 347 32.6
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 1.6e-26 124.4 148 51.4
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 3.1e-25 120.2 140 47.1
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 9.0e-25 118.6 125 51.2
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.3e-23 114.8 103 60.2
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 3.8e-23 113.2 106 54.7
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 8.4e-23 112.1 85 64.7
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 8.4e-23 112.1 81 63.0
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 2.7e-21 107.1 81 60.5
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 6.2e-18 95.9 148 33.8
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 9.9e-16 88.6 80 58.8
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 1.3e-15 88.2 54 77.8
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.3e-15 88.2 65 72.3
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 1.1e-14 85.1 73 56.2
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 2.1e-13 80.9 342 26.0
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 1.0e-12 78.6 40 87.5
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 6.2e-10 69.3 163 33.1
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 1.2e-08 65.1 172 26.7
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 2.0e-08 64.3 53 56.6
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 3.8e-07 60.1 43 65.1


User provided reference genes

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