Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 0.0e+00 1141.7 582 100.0
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 6.3e-276 953.7 588 85.4
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 4.1e-267 924.5 572 84.6
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 1.7e-260 902.5 606 78.2
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 3.0e-257 891.7 586 79.4
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 8.6e-257 890.2 566 82.0
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 3.1e-254 881.7 582 79.6
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 6.8e-254 880.6 581 80.2
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 1.6e-247 859.4 601 76.4
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 1.6e-247 859.4 594 77.3
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 6.4e-244 847.4 603 75.3
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 6.0e-242 840.9 505 85.0
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 4.3e-240 834.7 469 92.1
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 2.0e-237 825.9 536 79.5
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 3.2e-235 818.5 602 71.6
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 1.2e-234 816.6 597 73.7
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 3.5e-234 815.1 591 73.6
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 4.6e-234 814.7 511 80.4
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 2.3e-233 812.4 587 74.1
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 2.3e-233 812.4 587 74.1
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 6.6e-233 810.8 589 72.7
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 2.5e-232 808.9 584 71.7
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 2.5e-232 808.9 602 72.8
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 3.3e-232 808.5 548 76.5
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.3e-231 806.6 591 72.8
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 1.6e-231 806.2 600 72.0
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 4.0e-230 801.6 579 73.1
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 4.0e-230 801.6 603 70.5
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 4.0e-230 801.6 603 70.5
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 6.9e-230 800.8 602 71.6
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 6.9e-230 800.8 567 72.7
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 9.0e-230 800.4 602 69.8
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 3.4e-229 798.5 584 72.6
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 4.9e-228 794.7 537 74.5
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 4.9e-228 794.7 568 73.6
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 4.9e-228 794.7 628 67.5
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 6.4e-228 794.3 573 73.5
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 7.9e-226 787.3 586 71.2
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 3.0e-225 785.4 540 76.1
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 3.9e-225 785.0 598 70.4
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 5.1e-225 784.6 509 77.4
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 6.6e-225 784.3 599 70.3
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 9.6e-224 780.4 584 69.3
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 2.1e-223 779.2 568 72.2
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 8.1e-223 777.3 568 71.7
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 3.1e-222 775.4 560 74.3
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 9.0e-222 773.9 615 69.4
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 9.0e-222 773.9 540 75.7
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 9.0e-222 773.9 608 68.3
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.7e-220 769.6 593 68.5
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 2.4e-219 765.8 598 69.1
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 3.5e-218 761.9 543 71.8
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 6.7e-217 757.7 594 68.5
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 8.7e-217 757.3 602 69.8
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.9e-216 756.1 583 69.8
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 7.4e-216 754.2 596 68.3
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 6.2e-215 751.1 576 68.9
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 1.1e-214 750.4 551 71.7
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 2.4e-214 749.2 595 66.1
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 2.4e-214 749.2 595 66.1
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 2.4e-214 749.2 596 66.3
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 3.1e-214 748.8 507 72.8
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 3.1e-214 748.8 588 68.0
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 4.0e-214 748.4 596 65.9
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 4.0e-214 748.4 560 70.0
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.5e-213 746.5 574 70.6
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 2.0e-213 746.1 587 66.6
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 2.0e-213 746.1 589 66.2
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 2.0e-213 746.1 508 73.2
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 3.4e-213 745.3 595 65.7
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 7.6e-213 744.2 566 67.5
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 7.6e-213 744.2 534 71.2
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 1.0e-212 743.8 594 68.0
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 2.2e-212 742.7 544 70.4
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 2.9e-212 742.3 603 65.2
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 3.8e-212 741.9 508 73.0
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 2.7e-210 735.7 549 69.4
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 2.7e-210 735.7 599 65.1
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 3.9e-209 731.9 587 65.9
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 4.8e-207 724.9 665 61.7
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 2.4e-206 722.6 546 70.3
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 5.3e-206 721.5 477 75.1
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 9.0e-206 720.7 592 66.7
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 9.3e-203 710.7 559 68.9
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 6.1e-202 708.0 580 65.3
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 5.1e-201 704.9 583 65.7
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.5e-200 703.4 579 63.4
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 2.8e-199 699.1 535 68.2
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 4.8e-199 698.4 524 69.5
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 5.3e-198 694.9 598 65.1
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 2.0e-197 693.0 597 63.7
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 3.8e-196 688.7 461 76.6
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 5.5e-195 684.9 584 64.4
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 3.6e-194 682.2 648 60.3
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 3.6e-194 682.2 637 60.9
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.1e-190 670.6 559 64.9
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 3.4e-189 665.6 565 64.2
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 4.5e-189 665.2 508 68.3
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 4.2e-187 658.7 528 62.9
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.2e-186 657.1 459 71.9
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 2.0e-181 639.8 587 61.0
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 4.7e-170 602.1 389 78.1
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 5.7e-168 595.1 439 70.6
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 7.0e-166 588.2 523 62.1
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 5.0e-164 582.0 473 61.3
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 8.8e-161 571.2 562 57.1
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 1.5e-136 490.7 540 51.9
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 3.4e-136 489.6 345 72.8
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 6.4e-135 485.3 445 55.5
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 2.8e-130 469.9 349 74.2
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 1.1e-129 468.0 522 50.2
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 8.9e-129 464.9 452 52.2
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 4.1e-126 456.1 419 62.3
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 1.5e-123 447.6 510 53.3
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.3e-123 446.4 266 86.1
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 5.6e-123 445.7 397 58.9
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 7.3e-123 445.3 487 48.5
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 4.9e-119 432.6 430 57.0
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 1.1e-105 388.3 488 44.5
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.4e-89 334.7 347 51.6
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 4.3e-83 313.2 204 75.0
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 8.8e-76 288.9 275 58.2
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 2.5e-70 270.8 202 64.9
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 7.2e-70 269.2 173 76.9
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 1.1e-67 261.9 188 75.0
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 2.6e-67 260.8 277 53.1
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.2e-66 257.7 178 71.9
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 1.3e-63 248.4 262 47.3
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 8.5e-63 245.7 400 38.8
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.2e-59 235.3 238 57.1
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 1.8e-57 228.0 284 44.0
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.5e-56 223.8 177 69.5
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 2.7e-53 214.2 136 74.3
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 6.5e-47 193.0 113 82.3
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.3e-44 184.5 128 69.5
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 9.8e-43 179.1 274 40.1
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 6.6e-39 166.4 136 60.3
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 6.1e-37 159.8 122 64.8
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 8.3e-34 149.4 269 34.9
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 7.0e-33 146.4 106 67.9
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 1.5e-30 138.7 83 78.3
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 3.4e-27 127.5 95 70.5
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 3.2e-25 120.9 203 39.4
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 3.9e-23 114.0 273 31.9
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 5.6e-22 110.2 105 51.4
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.6e-21 108.6 228 35.5
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 1.2e-19 102.4 88 56.8
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 7.5e-19 99.8 71 70.4
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 2.9e-18 97.8 56 87.5
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 2.9e-18 97.8 71 69.0
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 6.4e-18 96.7 57 87.7
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.4e-17 94.7 91 49.5
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.1e-16 91.7 91 48.4
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 3.3e-14 84.3 65 63.1
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 6.4e-10 70.1 251 25.9
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 3.2e-09 67.8 59 55.9
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 1.2e-08 65.9 105 35.2
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 4.6e-08 63.9 277 23.1
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 7.8e-08 63.2 36 80.6
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 8.7e-07 59.7 40 75.0
Medtr1g007290 Medicago truncatula HOM05D004433 ORTHO05D005251 1.9e-06 58.5 52 51.9


User provided reference genes

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