Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 3.0e-201 704.9 345 100.0
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 8.3e-191 670.2 345 95.7
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 1.3e-175 619.8 346 88.2
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 4.3e-171 604.7 348 85.3
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 2.4e-161 572.4 347 81.8
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 4.0e-161 571.6 347 79.5
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 2.6e-160 568.9 342 80.4
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 3.4e-160 568.5 344 79.4
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 1.4e-158 563.1 337 80.7
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 6.0e-157 557.8 356 75.8
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 1.0e-156 557.0 355 76.1
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 8.1e-154 547.4 338 78.4
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 1.4e-153 546.6 342 77.2
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 2.4e-153 545.8 345 78.3
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 3.1e-153 545.4 343 77.8
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 5.3e-153 544.7 344 77.3
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 7.6e-152 540.8 314 81.5
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 7.6e-152 540.8 336 76.8
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 7.6e-152 540.8 343 74.9
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 7.6e-152 540.8 338 78.4
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 1.3e-151 540.0 338 78.4
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 2.2e-151 539.3 337 77.7
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.9e-151 538.9 341 75.7
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 2.9e-151 538.9 342 77.2
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 4.9e-151 538.1 338 77.5
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.2e-150 535.4 337 77.2
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 7.1e-150 534.3 331 77.3
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 7.1e-150 534.3 339 74.6
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 1.2e-149 533.5 312 79.2
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 2.7e-149 532.3 338 74.9
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 6.0e-149 531.2 350 74.9
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 6.0e-149 531.2 334 76.9
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 7.9e-149 530.8 343 75.5
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 7.9e-149 530.8 344 75.0
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 1.0e-148 530.4 339 73.5
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.3e-148 530.0 342 76.0
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.3e-148 529.3 351 73.8
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 3.9e-148 528.5 328 78.0
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 3.9e-148 528.5 342 76.3
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 8.7e-148 527.3 343 75.8
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 1.9e-147 526.2 339 75.5
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 2.5e-147 525.8 345 74.8
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 5.6e-147 524.6 344 75.3
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 1.3e-146 523.5 343 74.1
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.3e-146 523.5 344 75.9
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.6e-146 523.1 337 75.7
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.6e-146 523.1 309 79.6
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 2.1e-146 522.7 344 73.3
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 2.1e-146 522.7 333 76.0
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.8e-146 521.5 342 75.1
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.8e-146 521.5 342 75.7
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 6.2e-146 521.2 311 79.1
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 1.1e-145 520.4 355 72.4
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 1.1e-145 520.4 344 72.7
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 1.4e-145 520.0 343 74.9
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 2.4e-145 519.2 316 78.5
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 4.0e-145 518.5 345 73.0
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 4.0e-145 518.5 331 73.7
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 5.3e-145 518.1 316 76.9
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 5.3e-145 518.1 331 73.7
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 9.0e-145 517.3 315 76.5
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 1.5e-144 516.5 341 73.6
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 1.5e-144 516.5 344 72.4
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 2.0e-144 516.2 341 74.8
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 2.6e-144 515.8 335 74.6
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 3.4e-144 515.4 344 72.1
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 7.6e-144 514.2 344 71.2
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 7.6e-144 514.2 344 71.2
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 9.9e-144 513.8 344 71.5
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 9.9e-144 513.8 344 71.2
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 9.9e-144 513.8 344 71.2
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 9.9e-144 513.8 344 71.2
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 1.3e-143 513.5 311 76.2
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 2.2e-143 512.7 344 72.4
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 3.8e-143 511.9 330 74.5
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 3.8e-143 511.9 341 73.3
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 8.4e-143 510.8 345 73.9
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 4.2e-142 508.4 330 74.2
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 7.1e-142 507.7 333 72.4
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 7.1e-142 507.7 309 76.1
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 9.3e-142 507.3 338 74.3
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 1.0e-140 503.8 312 77.2
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 1.3e-140 503.4 341 71.6
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 5.1e-140 501.5 339 75.2
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 1.3e-138 496.9 322 72.7
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.8e-138 495.7 332 72.3
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.4e-137 493.4 332 72.3
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 4.5e-136 488.4 333 71.2
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 2.2e-135 486.1 322 71.1
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 3.2e-134 482.3 310 72.9
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 3.2e-134 482.3 342 68.1
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 4.2e-134 481.9 339 72.0
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 5.5e-134 481.5 303 76.6
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 2.7e-133 479.2 357 68.6
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 4.6e-133 478.4 322 73.0
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.8e-132 476.5 375 64.0
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 3.0e-132 475.7 297 75.4
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 8.7e-132 474.2 333 67.9
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.9e-131 473.0 336 68.2
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 3.3e-131 472.2 340 65.9
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 3.3e-131 472.2 313 73.8
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 1.6e-130 469.9 342 67.0
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 6.9e-129 464.5 306 70.3
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 6.9e-129 464.5 343 65.6
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 9.0e-129 464.2 311 73.3
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 3.4e-128 462.2 359 66.0
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.0e-127 460.7 356 67.1
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 6.5e-127 458.0 316 71.8
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 3.6e-125 452.2 337 66.2
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 7.9e-125 451.1 267 80.5
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.5e-123 446.8 317 68.1
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 1.9e-123 446.4 319 70.8
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 4.1e-121 438.7 337 65.6
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 1.5e-120 436.8 306 66.7
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 4.5e-120 435.3 263 78.7
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 7.7e-120 434.5 283 71.4
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.8e-119 432.2 303 66.0
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 1.2e-117 427.2 340 61.2
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 4.4e-115 418.7 278 70.9
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 4.1e-113 412.1 315 61.0
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 4.5e-112 408.7 245 80.8
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 6.5e-111 404.8 309 62.8
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 2.1e-109 399.8 287 66.9
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 3.9e-108 395.6 311 61.4
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 7.2e-102 374.8 398 51.3
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 4.0e-100 369.0 343 59.5
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 2.0e-96 356.7 222 74.8
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 3.0e-92 342.8 267 64.0
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.8e-89 333.6 226 67.3
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 2.2e-87 326.6 241 65.6
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 1.6e-85 320.5 317 50.2
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 2.0e-83 313.5 224 65.6
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 2.9e-79 299.7 268 56.7
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 3.0e-71 273.1 291 49.8
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 6.2e-69 265.4 170 72.4
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 9.8e-67 258.1 175 74.3
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 8.3e-58 228.4 141 76.6
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 9.2e-57 224.9 180 63.3
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 1.5e-54 217.6 195 59.5
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 6.0e-48 195.7 103 93.2
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 1.5e-46 191.0 122 74.6
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 4.6e-32 142.9 171 51.5
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 7.9e-24 115.5 75 65.3
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 5.1e-23 112.8 64 79.7
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 2.8e-21 107.1 66 72.7
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 1.1e-20 105.1 75 66.7
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 2.1e-16 90.9 138 40.6
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 6.0e-16 89.4 55 78.2
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 2.8e-13 80.5 77 57.1
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 3.7e-13 80.1 77 51.9
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 4.1e-12 76.6 203 28.1
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 5.9e-11 72.8 186 30.1
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 8.5e-10 68.9 171 28.7
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.4e-09 68.2 41 70.7
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 9.3e-09 65.5 99 34.3
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 2.7e-08 63.9 183 30.1
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 3.6e-08 63.5 78 50.0
Eucgr.A01124 Eucalyptus grandis HOM05D002024 ORTHO05D007288 1.4e-07 61.6 170 28.8
AagrBONN_evm.TU.Sc2ySwM_117.2157 Anthoceros agrestis HOM05D002024 ORTHO05D007288 2.3e-07 60.8 152 29.6
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 2.3e-07 60.8 213 24.4
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 3.0e-07 60.5 156 26.9
SEGI_14026 Sequoiadendron giganteum HOM05D002024 ORTHO05D004352 8.8e-07 58.9 153 28.1
BraA04t18006Z Brassica rapa HOM05D002024 ORTHO05D007288 1.1e-06 58.5 157 28.7
Duzib248G0941 Durio zibethinus HOM05D002024 ORTHO05D007288 1.1e-06 58.5 159 29.6
Duzib106G0860 Durio zibethinus HOM05D002024 ORTHO05D004352 1.5e-06 58.2 153 28.8
BcaB06g28594 Brassica carinata HOM05D002024 ORTHO05D007288 1.9e-06 57.8 189 27.5
MELO3C008822.2 Cucumis melo HOM05D002024 ORTHO05D004352 1.9e-06 57.8 154 27.9
DCAR_009083 Daucus carota HOM05D002024 ORTHO05D004352 1.9e-06 57.8 207 23.7
Lsat_1_v5_gn_6_31721 Lactuca sativa HOM05D002024 ORTHO05D004352 1.9e-06 57.8 153 26.8
COL.COLO4_28619 Corchorus olitorius HOM05D002024 ORTHO05D004352 2.5e-06 57.4 153 28.1
Gohir.A11G231400 Gossypium hirsutum HOM05D002024 ORTHO05D004352 2.5e-06 57.4 207 25.6
THA.LOC104826151 Tarenaya hassleriana HOM05D002024 ORTHO05D007288 2.5e-06 57.4 156 27.6
Zm00001eb004370 Zea mays HOM05D002024 ORTHO05D004352 2.5e-06 57.4 157 25.5
CsaV3_4G012120 Cucumis sativus L. HOM05D002024 ORTHO05D004352 3.3e-06 57.0 153 28.1
SMO351G0038 Selaginella moellendorffii HOM05D002024 ORTHO05D004352 3.3e-06 57.0 155 25.8
Aqoxy1G00536 Aquilegia oxysepala HOM05D002024 ORTHO05D004352 4.3e-06 56.6 153 27.5
ClCG02G001940 Citrullus lanatus HOM05D002024 ORTHO05D007288 4.3e-06 56.6 189 27.0
Thecc.02G316100 Theobroma cacao HOM05D002024 ORTHO05D007288 4.3e-06 56.6 159 28.3
VMungo1127G2134 Vigna mungo HOM05D002024 ORTHO05D007288 4.3e-06 56.6 155 28.4
ATR0697G132 Amborella trichopoda HOM05D002024 ORTHO05D004352 5.7e-06 56.2 153 26.8
CDE10G1351 Ceratophyllum demersum HOM05D002024 ORTHO05D004352 5.7e-06 56.2 153 28.1
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 5.7e-06 56.2 154 26.0
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 7.4e-06 55.8 154 26.0
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 7.4e-06 55.8 154 26.0
Thhalv10003636m.g Eutrema salsugineum HOM05D002024 ORTHO05D004352 9.7e-06 55.5 154 27.9
Hund15117 Selenicereus undatus HOM05D002024 ORTHO05D004352 9.7e-06 55.5 153 27.5


User provided reference genes

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