Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 4.1e-154 548.1 300 100.0
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 1.7e-152 542.7 300 99.0
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 2.7e-145 518.8 302 94.7
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 6.2e-134 481.1 300 84.0
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 8.1e-134 480.7 304 81.6
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 1.1e-133 480.3 304 81.2
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.8e-133 479.6 304 82.6
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 2.0e-132 476.1 304 81.6
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 4.4e-132 474.9 302 85.4
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.2e-131 472.6 302 83.8
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 2.2e-131 472.6 302 83.8
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 2.2e-131 472.6 304 80.6
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 8.4e-131 470.7 307 81.1
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 8.4e-131 470.7 302 86.8
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 1.4e-130 469.9 307 82.7
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 4.2e-130 468.4 307 84.0
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 5.4e-130 468.0 302 86.8
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 5.4e-130 468.0 304 79.6
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 9.3e-130 467.2 300 81.3
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.6e-129 466.5 302 82.8
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 2.1e-129 466.1 304 83.2
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 3.5e-129 465.3 301 81.1
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 3.5e-129 465.3 306 83.3
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 6.6e-128 461.1 302 82.8
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 6.6e-128 461.1 304 83.2
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 8.7e-128 460.7 299 80.3
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 1.1e-127 460.3 305 78.0
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 1.1e-127 460.3 304 78.9
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 3.3e-127 458.8 304 78.6
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 7.3e-127 457.6 300 80.7
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 7.3e-127 457.6 303 79.5
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 1.3e-126 456.8 302 79.8
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 1.3e-126 456.8 300 80.7
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.1e-126 456.1 304 78.3
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.1e-126 456.1 304 78.3
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 2.1e-126 456.1 306 79.1
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 2.1e-126 456.1 306 81.7
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 6.2e-126 454.5 298 80.5
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 6.2e-126 454.5 300 80.3
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 8.1e-126 454.1 302 77.5
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 8.1e-126 454.1 298 80.2
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 1.1e-125 453.8 300 82.0
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 1.4e-125 453.4 300 78.7
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 1.4e-125 453.4 305 80.0
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 1.4e-125 453.4 303 78.5
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 1.8e-125 453.0 304 79.9
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 3.1e-125 452.2 304 78.0
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 4.0e-125 451.8 304 77.6
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 4.0e-125 451.8 306 79.4
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 4.0e-125 451.8 306 79.4
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 4.0e-125 451.8 306 79.4
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 4.0e-125 451.8 298 81.9
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 5.3e-125 451.4 303 83.2
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 6.9e-125 451.1 299 81.9
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 9.0e-125 450.7 305 79.0
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 9.0e-125 450.7 305 82.6
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.2e-124 450.3 300 79.7
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 3.4e-124 448.7 303 80.2
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 3.4e-124 448.7 300 79.0
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 1.3e-123 446.8 301 82.7
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 1.7e-123 446.4 302 81.1
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 1.7e-123 446.4 303 76.9
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 4.9e-123 444.9 301 79.1
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 6.4e-123 444.5 300 76.3
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 1.4e-122 443.4 295 79.7
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 1.9e-122 443.0 302 79.5
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 3.2e-122 442.2 302 77.2
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 5.5e-122 441.4 300 73.7
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 9.3e-122 440.7 300 79.7
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 9.3e-122 440.7 300 73.7
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 3.5e-121 438.7 301 78.4
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 3.5e-121 438.7 300 79.7
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 1.0e-120 437.2 302 74.8
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.0e-120 437.2 302 79.5
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 1.3e-120 436.8 283 80.9
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 1.3e-120 436.8 304 77.0
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 1.8e-120 436.4 304 76.6
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.8e-120 436.4 300 75.7
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 1.8e-120 436.4 302 74.8
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 2.3e-120 436.0 304 77.3
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 2.3e-120 436.0 304 77.3
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 3.0e-120 435.6 303 77.2
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 6.7e-120 434.5 301 80.7
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 8.7e-120 434.1 303 78.5
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.9e-119 433.0 292 76.7
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 1.9e-119 433.0 302 74.8
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 2.5e-119 432.6 304 77.0
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 3.3e-119 432.2 301 80.7
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 3.3e-119 432.2 300 78.0
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 4.3e-119 431.8 300 75.3
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 7.4e-119 431.0 301 78.7
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 9.6e-119 430.6 301 80.4
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 4.8e-118 428.3 300 79.7
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 4.8e-118 428.3 300 79.7
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 4.8e-118 428.3 300 79.7
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 6.2e-118 427.9 303 77.6
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 1.4e-117 426.8 303 77.6
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 2.4e-117 426.0 300 72.0
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 5.3e-117 424.9 300 73.3
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 5.3e-117 424.9 300 75.0
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 9.0e-117 424.1 306 77.5
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 4.5e-116 421.8 300 72.7
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 4.5e-116 421.8 303 71.0
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 2.9e-115 419.1 301 74.8
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 4.9e-115 418.3 300 76.3
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 6.0e-113 411.4 303 74.6
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.5e-111 406.8 300 70.3
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 1.9e-111 406.4 312 73.4
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.8e-109 399.8 297 71.4
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 2.4e-109 399.4 302 68.5
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.5e-106 389.4 280 76.8
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 5.5e-106 388.3 300 66.7
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 8.2e-102 374.4 304 74.0
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 1.1e-101 374.0 299 66.6
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 2.7e-97 359.4 300 63.0
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 6.7e-96 354.8 289 67.5
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 5.0e-91 338.6 303 59.7
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 8.5e-91 337.8 323 58.5
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 1.1e-87 327.4 195 80.0
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.9e-82 310.1 250 70.4
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 1.6e-81 307.0 301 56.1
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 1.8e-80 303.5 296 56.4
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 8.8e-80 301.2 191 78.5
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 1.5e-79 300.4 250 66.0
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 7.7e-76 288.1 300 58.3
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 1.8e-69 266.9 189 83.6
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 2.7e-68 263.1 299 51.8
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.5e-66 257.3 134 93.3
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.6e-57 227.3 195 64.1
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 2.1e-57 226.9 210 65.2
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 5.2e-56 222.2 271 53.5
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 2.8e-49 199.9 193 62.7
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 6.2e-49 198.7 303 44.2
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 5.2e-48 195.7 292 46.6
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 9.8e-47 191.4 191 62.3
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 6.6e-43 178.7 164 67.1
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 3.6e-41 172.9 199 50.3
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 6.2e-41 172.2 174 58.6
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 4.0e-40 169.5 227 50.2
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 1.5e-39 167.5 110 78.2
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 1.2e-36 157.9 104 73.1
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 9.9e-31 138.3 106 65.1
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 9.2e-29 131.7 260 43.5
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 4.3e-26 122.9 114 74.6
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 2.4e-24 117.1 113 71.7
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 2.9e-22 110.2 95 77.9
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 4.9e-22 109.4 81 66.7
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 1.1e-21 108.2 81 65.4
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 2.4e-21 107.1 300 37.7
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 7.1e-21 105.5 61 78.7
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 3.5e-20 103.2 300 37.0
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 1.0e-19 101.7 102 61.8
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 1.0e-19 101.7 94 71.3
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 2.5e-18 97.1 68 67.6
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 1.6e-09 67.8 52 73.1
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 2.1e-09 67.4 128 46.1
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 4.9e-06 56.2 35 80.0


User provided reference genes

Program Settings