Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 2640.1 1316 100.0
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 2490.7 1319 94.5
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 2336.2 1319 88.6
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 2291.2 1319 87.4
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 2169.8 1320 82.7
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 2134.4 1335 80.3
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 2132.5 1334 80.1
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 2120.1 1325 80.6
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 2113.2 1326 81.3
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 2106.6 1325 80.6
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 2101.2 1326 80.2
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 2088.9 1324 80.4
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1822.8 1329 68.8
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1802.7 1309 68.6
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1784.2 1329 67.1
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1743.0 1326 67.1
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1711.4 1337 64.7
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1710.7 1322 66.3
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1707.6 1324 65.6
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1703.7 1324 65.4
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1703.7 1333 65.0
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1701.0 1332 64.2
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1697.2 1324 65.0
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1690.6 1324 65.1
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1686.0 1325 65.4
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1682.5 1339 64.2
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1679.1 1335 64.0
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1678.7 1330 63.5
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1674.1 1334 63.3
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1664.8 1331 64.0
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1661.7 1330 63.9
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1651.7 1398 60.7
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1632.5 1334 61.8
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1622.4 1267 64.3
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1619.8 1335 61.5
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1610.1 1329 63.6
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1600.9 1329 62.5
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1595.9 1331 62.5
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1585.5 1338 59.3
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1577.0 1332 61.9
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1575.8 1476 56.4
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1573.9 1337 59.9
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1573.5 1240 62.6
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1573.1 1336 60.1
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1571.2 1335 60.7
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1570.4 1346 60.3
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1570.4 1372 60.1
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1567.0 1335 59.8
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1565.4 1215 64.7
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1563.5 1215 64.5
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1560.0 1336 60.8
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1560.0 1337 59.4
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1553.9 1338 60.6
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1552.0 1340 59.3
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1546.9 1336 60.0
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1532.3 1327 59.1
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1512.3 1331 57.9
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1510.4 1331 57.8
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1506.5 1340 58.5
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1501.5 1338 58.0
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1498.8 1331 58.0
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1495.7 1328 57.5
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1495.7 1337 57.9
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1492.2 1329 58.0
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1488.4 1330 57.7
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1484.5 1337 58.3
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1481.8 1329 57.0
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1480.7 1344 57.4
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1479.5 1329 57.8
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1476.5 1333 56.4
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1476.1 1326 57.8
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1466.4 1322 57.5
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1427.5 1326 56.7
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1423.7 1327 56.1
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1421.0 1306 57.0
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1384.4 1327 56.2
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1380.2 1328 55.3
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1373.2 1325 56.1
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1372.1 1322 55.8
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1370.5 1322 55.9
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1367.8 1329 54.7
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1367.1 1316 55.5
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1361.3 1325 55.8
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1361.3 1325 55.8
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1351.3 1288 54.3
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1347.0 1256 55.4
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1346.6 1337 53.1
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1242.6 1094 58.9
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1239.9 1318 51.1
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1207.2 1321 50.1
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1204.1 1315 49.0
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1190.3 895 64.7
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1186.4 1328 49.2
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1173.7 987 61.1
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1171.0 1312 48.5
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1169.1 988 60.9
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 0.0e+00 1077.0 862 63.3
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 4.0e-310 1068.5 1238 48.6
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 2.8e-279 966.1 1299 45.6
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 1.6e-274 950.3 1299 41.6
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 1.8e-238 830.5 1273 38.9
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 1.3e-231 807.7 1119 41.2
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 1.1e-230 804.7 1308 37.6
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 1.9e-227 793.9 1266 37.0
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 9.7e-224 781.6 950 45.9
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 6.9e-169 599.4 580 57.1
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 5.6e-163 579.7 588 51.9
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 1.6e-162 578.2 483 61.3
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 5.9e-120 436.8 1146 28.8
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 4.2e-110 404.1 290 66.9
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 2.7e-96 358.2 326 57.4
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 1.1e-89 336.3 320 52.5
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 3.3e-86 324.7 373 49.1
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 5.2e-84 317.4 292 60.3
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 3.4e-83 314.7 1037 27.9
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 2.7e-56 225.3 183 59.6
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 7.8e-56 223.8 216 52.3
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 3.0e-55 221.9 311 42.4
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 8.4e-50 203.8 168 57.7
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 1.9e-46 192.6 302 40.7
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 5.5e-41 174.5 150 56.0
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 1.0e-39 170.2 119 68.9
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 3.9e-31 141.7 129 61.2
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 9.3e-25 120.6 660 23.6
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 1.1e-22 113.6 121 47.9
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 4.6e-16 91.7 87 43.7
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 2.3e-15 89.4 75 62.7
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 1.8e-12 79.7 102 41.2
Hma1.2p1_0133F.1_g061360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 7.2e-09 67.8 65 60.0
BolC7t41437H Brassica oleracea HOM05D005691 ORTHO05D027513 7.9e-08 64.3 128 35.9
SEGI_34592 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 3.9e-07 62.0 47 61.7


User provided reference genes

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