Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G007900 Glycine max HOM05D004044 ORTHO05D004841 1.9e-68 262.3 127 100.0
Ca_18265_v3 Cicer arietinum L. HOM05D004044 ORTHO05D004841 8.7e-53 210.3 177 66.7
Glyma.05G130300 Glycine max HOM05D004044 ORTHO05D004841 8.7e-53 210.3 177 66.7
Glyma.08G085100 Glycine max HOM05D004044 ORTHO05D004841 8.7e-53 210.3 177 66.7
Phvul.002G193600 Phaseolus vulgaris HOM05D004044 ORTHO05D004841 8.7e-53 210.3 177 66.7
Ca_04445_v3 Cicer arietinum L. HOM05D004044 ORTHO05D004841 1.5e-52 209.5 177 66.1
Medtr4g096810 Medicago truncatula HOM05D004044 ORTHO05D004841 1.5e-52 209.5 177 66.1
Lalb_Chr03g0035651 Lupinus albus HOM05D004044 ORTHO05D004841 1.9e-52 209.1 177 66.7
VMungo0251G1187 Vigna mungo HOM05D004044 ORTHO05D004841 1.9e-52 209.1 177 66.1
TPR.G4935 Trifolium pratense HOM05D004044 ORTHO05D004841 2.5e-52 208.8 177 66.1
Lalb_Chr19g0130021 Lupinus albus HOM05D004044 ORTHO05D004841 3.3e-52 208.4 177 65.5
arahy.Tifrunner.gnm1.ann1.3AM9HW Arachis hypogaea HOM05D004044 ORTHO05D004841 5.6e-52 207.6 175 66.3
arahy.Tifrunner.gnm1.ann1.4J3X95 Arachis hypogaea HOM05D004044 ORTHO05D004841 5.6e-52 207.6 175 66.3
VMungo0647G0323 Vigna mungo HOM05D004044 ORTHO05D004841 9.6e-52 206.8 177 65.0
Psat7g090040 Pisum sativum HOM05D004044 ORTHO05D004841 1.2e-51 206.5 177 65.0
Manes.02G127300 Manihot esculenta HOM05D004044 ORTHO05D004841 3.6e-51 204.9 175 65.1
PGR102G0470 Punica granatum HOM05D004044 ORTHO05D004841 3.6e-51 204.9 175 64.6
Duzib150G0800 Durio zibethinus HOM05D004044 ORTHO05D004841 1.1e-50 203.4 175 64.6
Gohir.A08G001500 Gossypium hirsutum HOM05D004044 ORTHO05D004841 1.4e-50 203.0 175 64.0
Thecc.09G313400 Theobroma cacao HOM05D004044 ORTHO05D004841 1.4e-50 203.0 175 64.0
FAN02G2699 Fragaria x ananassa HOM05D004044 ORTHO05D004841 1.8e-50 202.6 177 63.8
FAN09G1115 Fragaria x ananassa HOM05D004044 ORTHO05D004841 1.8e-50 202.6 177 63.8
CiPaw.14G064200 Carya illinoinensis HOM05D004044 ORTHO05D004841 2.4e-50 202.2 174 64.4
Potri.001G377200 Populus trichocarpa HOM05D004044 ORTHO05D004841 2.4e-50 202.2 174 64.4
Prupe.5G243500 Prunus persica HOM05D004044 ORTHO05D004841 2.4e-50 202.2 175 64.0
Lj2g0017435 Lotus japonicus HOM05D004044 ORTHO05D004841 3.1e-50 201.8 177 65.0
Cfa017837 Carpinus fangiana HOM05D004044 ORTHO05D004841 4.0e-50 201.4 174 64.4
ClCG01G008130 Citrullus lanatus HOM05D004044 ORTHO05D004841 4.0e-50 201.4 174 64.4
CsaV3_5G020160 Cucumis sativus L. HOM05D004044 ORTHO05D004841 4.0e-50 201.4 174 64.4
FAN05G0006 Fragaria x ananassa HOM05D004044 ORTHO05D004841 4.0e-50 201.4 177 63.3
FAN09G4540 Fragaria x ananassa HOM05D004044 ORTHO05D004841 4.0e-50 201.4 177 63.3
Gorai.004G006200 Gossypium raimondii HOM05D004044 ORTHO05D004841 4.0e-50 201.4 175 63.4
FvH4_6g26920 Fragaria vesca HOM05D004044 ORTHO05D004841 6.9e-50 200.7 177 62.7
FAN14G5530 Fragaria x ananassa HOM05D004044 ORTHO05D004841 6.9e-50 200.7 177 62.7
Prupe.4G244700 Prunus persica HOM05D004044 ORTHO05D004841 6.9e-50 200.7 175 63.4
QL12p009539 Quercus lobata HOM05D004044 ORTHO05D004841 6.9e-50 200.7 174 63.8
RcHm_v2.0_Chr2g0128671 Rosa chinensis HOM05D004044 ORTHO05D004841 6.9e-50 200.7 177 62.7
Gohir.D08G012200 Gossypium hirsutum HOM05D004044 ORTHO05D004841 1.2e-49 199.9 175 62.9
GSVIVG01024869001 Vitis vinifera HOM05D004044 ORTHO05D004841 1.2e-49 199.9 175 62.9
Ciclev10029380m.g Citrus clementina HOM05D004044 ORTHO05D004841 1.5e-49 199.5 177 62.1
MD06G1239600 Malus domestica HOM05D004044 ORTHO05D004841 1.5e-49 199.5 175 62.9
MD14G1245600 Malus domestica HOM05D004044 ORTHO05D004841 1.5e-49 199.5 175 62.9
Atru.chr13.1634 Acer truncatum HOM05D004044 ORTHO05D004841 5.8e-49 197.6 177 61.6
Atru.chr3.4016 Acer truncatum HOM05D004044 ORTHO05D004841 5.8e-49 197.6 177 61.6
Cpa.g.sc81.63 Carica papaya HOM05D004044 ORTHO05D004841 5.8e-49 197.6 171 63.7
Nn1g09527 Nelumbo nucifera HOM05D004044 ORTHO05D004841 5.8e-49 197.6 173 63.0
PSO675G7761 Papaver somniferum HOM05D004044 ORTHO05D004841 5.8e-49 197.6 174 62.1
TAR369G0144 Trochodendron aralioides HOM05D004044 ORTHO05D004841 5.8e-49 197.6 173 63.0
TAR623G0707 Trochodendron aralioides HOM05D004044 ORTHO05D004841 5.8e-49 197.6 173 63.0
Dinv17058 Davidia involucrata HOM05D004044 ORTHO05D004841 7.6e-49 197.2 175 62.3
Sed0005531 Sechium edule HOM05D004044 ORTHO05D004841 7.6e-49 197.2 173 61.8
CDE02G2400 Ceratophyllum demersum HOM05D004044 ORTHO05D004841 9.9e-49 196.8 176 60.8
CANSAT25G0006 Cannabis sativa HOM05D004044 ORTHO05D004841 1.3e-48 196.4 174 62.6
CANSAT25G0085 Cannabis sativa HOM05D004044 ORTHO05D004841 1.3e-48 196.4 174 62.6
PSO675G0394 Papaver somniferum HOM05D004044 ORTHO05D004841 1.7e-48 196.1 173 61.8
TWI75G1574 Tripterygium wilfordii HOM05D004044 ORTHO05D004841 2.2e-48 195.7 178 62.4
AL8G35510 Arabidopsis lyrata HOM05D004044 ORTHO05D004841 2.9e-48 195.3 174 62.6
Carub.0008s1977 Capsella rubella HOM05D004044 ORTHO05D004841 2.9e-48 195.3 174 62.6
Sp6g20810 Schrenkiella parvula HOM05D004044 ORTHO05D004841 2.9e-48 195.3 174 62.6
Actinidia23914 Actinidia chinensis HOM05D004044 ORTHO05D004841 3.8e-48 194.9 173 62.4
Cc01_g13450 Coffea canephora HOM05D004044 ORTHO05D004841 3.8e-48 194.9 175 61.7
THA.LOC104810752 Tarenaya hassleriana HOM05D004044 ORTHO05D004841 3.8e-48 194.9 174 62.1
Lsat_1_v5_gn_5_161301 Lactuca sativa HOM05D004044 ORTHO05D004841 6.4e-48 194.1 173 61.8
TWI31G1060 Tripterygium wilfordii HOM05D004044 ORTHO05D004841 6.4e-48 194.1 178 61.2
Sc12g0001200 Simmondsia chinensis HOM05D004044 ORTHO05D004841 8.4e-48 193.7 173 61.8
EL10Ac7g16082 Beta vulgaris HOM05D004044 ORTHO05D004841 1.1e-47 193.4 175 60.0
CSS0028029 Camellia sinensis var. sinensis HOM05D004044 ORTHO05D004841 1.4e-47 193.0 173 61.8
CAN.G141.22 Capsicum annuum HOM05D004044 ORTHO05D004841 1.4e-47 193.0 175 60.6
Solyc06g005790.3 Solanum lycopersicum HOM05D004044 ORTHO05D004841 1.4e-47 193.0 175 60.6
MSTRG.16970 Avicennia marina HOM05D004044 ORTHO05D004841 1.9e-47 192.6 173 61.3
BcaB05g22479 Brassica carinata HOM05D004044 ORTHO05D004841 1.9e-47 192.6 174 61.5
BcaC03g14038 Brassica carinata HOM05D004044 ORTHO05D004841 1.9e-47 192.6 174 61.5
A02p07330 Brassica napus HOM05D000115 ORTHO05D004841 1.9e-47 192.6 174 61.5
C02p12800 Brassica napus HOM05D004044 ORTHO05D004841 1.9e-47 192.6 174 61.5
Aa31LG1G11990 Aethionema arabicum HOM05D004044 ORTHO05D004841 3.2e-47 191.8 174 60.9
CARHR285370 Cardamine hirsuta HOM05D004044 ORTHO05D004841 3.2e-47 191.8 174 61.5
THA.LOC104799424 Tarenaya hassleriana HOM05D004044 ORTHO05D004841 3.2e-47 191.8 174 61.5
Hma1.2p1_0274F.1_g110460 Hydrangea macrophylla HOM05D004044 ORTHO05D004841 4.2e-47 191.4 175 60.0
Lj6g0006771 Lotus japonicus HOM05D004044 ORTHO05D004841 4.2e-47 191.4 172 64.0
Nitab4.5_0000839g0100 Nicotiana tabacum HOM05D004044 ORTHO05D004841 7.1e-47 190.7 173 60.7
Nitab4.5_0005607g0010 Nicotiana tabacum HOM05D004044 ORTHO05D004841 7.1e-47 190.7 173 60.7
AT5G59180 Arabidopsis thaliana HOM05D004044 ORTHO05D004841 9.3e-47 190.3 174 60.9
Migut.K00397 Erythranthe guttata HOM05D004044 ORTHO05D004841 9.3e-47 190.3 175 59.4
Lj1A145T59 Lonicera japonica HOM05D004044 ORTHO05D004841 1.2e-46 189.9 173 60.7
Os05g0400700 Oryza sativa ssp. japonica HOM05D004044 ORTHO05D004841 1.6e-46 189.5 173 60.1
Hund04913 Selenicereus undatus HOM05D004044 ORTHO05D004841 3.5e-46 188.3 174 59.2
Zm00001eb287570 Zea mays HOM05D004044 ORTHO05D004841 3.5e-46 188.3 173 60.1
Gorai.009G096000 Gossypium raimondii HOM05D004044 ORTHO05D004841 6.0e-46 187.6 146 69.2
A10p16340 Brassica napus HOM05D000115 ORTHO05D004841 1.0e-45 186.8 173 59.5
Hund18882 Selenicereus undatus HOM05D004044 ORTHO05D004841 1.0e-45 186.8 173 59.0
BcaB08g36284 Brassica carinata HOM05D004044 ORTHO05D004841 1.5e-44 183.0 178 58.4
Rhsim01G0232900 Rhododendron simsii HOM05D004044 ORTHO05D004841 4.3e-44 181.4 170 58.8
ATR0697G111 Amborella trichopoda HOM05D004044 ORTHO05D004841 7.3e-44 180.6 131 70.2
AagrBONN_evm.TU.Sc2ySwM_344.2510 Anthoceros agrestis HOM05D004044 ORTHO05D004841 9.6e-44 180.3 175 56.0
SMO367G0145 Selaginella moellendorffii HOM05D004044 ORTHO05D004841 1.6e-43 179.5 173 57.2
vmacro14563 Vaccinium macrocarpon HOM05D004044 ORTHO05D004841 1.6e-43 179.5 189 55.6
HanXRQChr09g0248471 Helianthus annuus HOM05D004044 ORTHO05D004841 2.1e-43 179.1 165 60.6
HanXRQChr09g0256561 Helianthus annuus HOM05D004044 ORTHO05D004841 2.1e-43 179.1 165 60.6
Mapoly0121s0023 Marchantia polymorpha HOM05D004044 ORTHO05D004841 2.8e-43 178.7 173 56.6
Pp3c6_9100 Physcomitrium patens HOM05D004044 ORTHO05D004841 4.8e-43 177.9 173 56.1
PSO541G5855 Papaver somniferum HOM05D004044 ORTHO05D004841 1.4e-42 176.4 156 59.6
PSO675G2284 Papaver somniferum HOM05D004044 ORTHO05D004841 1.4e-42 176.4 156 59.6
Sopen06g001770 Solanum pennellii HOM05D004044 ORTHO05D004841 3.1e-42 175.3 165 58.8
PGSC0003DMG400020826 Solanum tuberosum HOM05D004044 ORTHO05D004841 3.1e-42 175.3 165 58.8
ECA247G2777 Erigeron canadensis HOM05D004044 ORTHO05D004841 4.0e-42 174.9 165 58.8
Sed0006109 Sechium edule HOM05D004044 ORTHO05D004841 6.9e-42 174.1 159 60.4
Oeu017406.1 Olea europaea HOM05D004044 ORTHO05D004841 9.0e-42 173.7 172 54.1
AUR62020050 Chenopodium quinoa HOM05D004044 ORTHO05D004841 1.2e-41 173.3 163 58.9
MSTRG.20492 Avicennia marina HOM05D004044 ORTHO05D004841 2.0e-41 172.6 159 59.1
MBI05_g02651_MAGBIO Magnolia biondii HOM05D004044 ORTHO05D004841 2.6e-41 172.2 168 58.3
ECA248G0832 Erigeron canadensis HOM05D004044 ORTHO05D004841 9.9e-41 170.2 165 57.6
Haze_00336 Corylus avellana HOM05D004044 ORTHO05D004841 1.3e-40 169.9 152 61.2
BolC2t07375H Brassica oleracea HOM05D000115 ORTHO05D004841 6.4e-40 167.5 176 54.5
AUR62001726 Chenopodium quinoa HOM05D000001 ORTHO05D000003 8.4e-40 167.2 160 57.5
Ah.08g220220 Amaranthus hybridus HOM05D000115 ORTHO05D000464 1.1e-39 166.8 156 59.0
SEGI_41420 Sequoiadendron giganteum HOM05D004044 ORTHO05D004841 1.1e-39 166.8 164 56.1
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.1e-39 166.8 163 55.8
BraA02t05814Z Brassica rapa HOM05D004044 ORTHO05D004841 1.4e-39 166.4 178 53.9
RcHm_v2.0_Chr6g0292371 Rosa chinensis HOM05D004044 ORTHO05D004841 1.4e-39 166.4 178 55.1
BraA03t10501Z Brassica rapa HOM05D004044 ORTHO05D004841 5.4e-39 164.5 176 52.3
BolC3t13845H Brassica oleracea HOM05D004044 ORTHO05D004841 9.3e-39 163.7 176 52.3
FvH4_2g24550 Fragaria vesca HOM05D004044 ORTHO05D004841 9.3e-39 163.7 171 54.4
FAN15G0434 Fragaria x ananassa HOM05D004044 ORTHO05D004841 1.2e-38 163.3 172 55.2
FAN24G0219 Fragaria x ananassa HOM05D004044 ORTHO05D000111 1.2e-38 163.3 172 54.7
BraA10t43718Z Brassica rapa HOM05D004044 ORTHO05D004841 2.7e-38 162.2 174 52.9
BolC9t57997H Brassica oleracea HOM05D004044 ORTHO05D004841 4.6e-38 161.4 175 52.6
BcaC04g19817 Brassica carinata HOM05D004044 ORTHO05D004841 6.0e-38 161.0 174 52.9
Rhsim10G0155000 Rhododendron simsii HOM05D004044 ORTHO05D004841 1.3e-37 159.8 169 53.8
A03p11890 Brassica napus HOM05D000115 ORTHO05D004841 6.7e-37 157.5 176 51.1
A03p60060 Brassica napus HOM05D004044 ORTHO05D004841 1.5e-36 156.4 174 52.3
COL.COLO4_35818 Corchorus olitorius HOM05D004044 ORTHO05D004841 1.3e-35 153.3 137 59.9
SGA_v2.0_scaffold183G39883 Striga asiatica HOM05D004044 ORTHO05D004841 1.6e-35 152.9 152 54.6
Rhsim10G0155100 Rhododendron simsii HOM05D004044 ORTHO05D004841 2.8e-35 152.1 199 46.2
Duzib147G0502 Durio zibethinus HOM05D004044 ORTHO05D004841 3.7e-35 151.8 176 51.1
Lj2g0015661 Lotus japonicus HOM05D004044 ORTHO05D004841 3.7e-35 151.8 147 60.5
DCAR_007422 Daucus carota HOM05D004044 ORTHO05D004841 4.8e-35 151.4 150 55.3
C03p13980 Brassica napus HOM05D004044 ORTHO05D004841 8.1e-35 150.6 169 50.9
Sabra16G0248500 Salix brachista HOM05D004044 ORTHO05D004841 1.8e-34 149.4 163 54.0
Thhalv10014822m.g Eutrema salsugineum HOM05D004044 ORTHO05D004841 7.6e-33 144.1 112 65.2
Dinv43002 Davidia involucrata HOM05D004044 ORTHO05D004841 9.9e-33 143.7 112 65.2
Dinv43095 Davidia involucrata HOM05D004044 ORTHO05D004841 9.9e-33 143.7 112 65.2
BcaB01g04614 Brassica carinata HOM05D004044 ORTHO05D004841 4.9e-32 141.4 172 48.3
MELO3C027194.2 Cucumis melo HOM05D004044 ORTHO05D004841 7.9e-30 134.0 136 58.8
FAN27G1470 Fragaria x ananassa HOM05D004044 ORTHO05D000111 2.3e-29 132.5 156 52.6
CSS0043288 Camellia sinensis var. sinensis HOM05D004044 ORTHO05D004841 3.0e-29 132.1 144 54.2
Eucgr.J01999 Eucalyptus grandis HOM05D004044 ORTHO05D004841 6.7e-29 131.0 135 57.8
Peaxi162Scf00481g00055 Petunia axillaris HOM05D004044 ORTHO05D004841 8.7e-29 130.6 147 53.7
SHI49599 Sapria himalayana HOM05D004044 ORTHO05D004841 8.7e-29 130.6 125 60.8
unitig_0.g646 Utricularia gibba HOM05D004044 ORTHO05D004841 3.7e-27 125.2 133 51.1
Nitab4.5_0000102g0420 Nicotiana tabacum HOM05D004044 ORTHO05D004841 1.1e-26 123.6 102 60.8
Gohir.A05G092600 Gossypium hirsutum HOM05D004044 ORTHO05D004841 1.5e-25 119.8 118 53.4
Oeu007669.1 Olea europaea HOM05D004044 ORTHO05D004841 7.6e-25 117.5 89 64.0
AUR62028438 Chenopodium quinoa HOM05D004044 ORTHO05D004841 1.3e-24 116.7 72 72.2
BcaB01g04613 Brassica carinata HOM05D004044 ORTHO05D004841 3.8e-24 115.2 100 59.0
MCO11G406 Micromonas commoda HOM05D004044 ORTHO05D004841 8.4e-24 114.0 176 36.4
Haze_27325 Corylus avellana HOM05D004044 ORTHO05D004841 7.9e-22 107.5 172 34.3
Cre16.g667750 Chlamydomonas reinhardtii HOM05D004044 ORTHO05D004841 2.3e-21 105.9 175 32.6
Nitab4.5_0009356g0020 Nicotiana tabacum HOM05D004044 ORTHO05D004841 2.3e-21 105.9 62 74.2
PRCOL_00005897 Prasinoderma coloniale HOM05D004044 ORTHO05D004841 3.9e-21 105.1 176 36.4
SHI51478 Sapria himalayana HOM05D004044 ORTHO05D004841 7.4e-20 100.9 86 61.6
SEGI_11642 Sequoiadendron giganteum HOM05D004044 ORTHO05D004841 4.8e-19 98.2 62 69.4
SHI53714 Sapria himalayana HOM05D004044 ORTHO05D004841 8.2e-19 97.4 67 67.2
SHI51733 Sapria himalayana HOM05D004044 ORTHO05D004841 1.2e-17 93.6 105 53.3
Gohir.D05G093400 Gossypium hirsutum HOM05D004044 ORTHO05D004841 1.4e-15 86.7 81 63.0
SHI32325 Sapria himalayana HOM05D004044 ORTHO05D004841 4.2e-15 85.1 84 52.4
Migut.K00396 Erythranthe guttata HOM05D004044 ORTHO05D004841 1.2e-14 83.6 126 43.7
C09p51390 Brassica napus HOM05D004044 ORTHO05D004841 2.7e-14 82.4 128 42.2
SEGI_08143 Sequoiadendron giganteum HOM05D004044 ORTHO05D004841 7.9e-14 80.9 80 57.5
SHI53421 Sapria himalayana HOM05D004044 ORTHO05D004841 1.8e-13 79.7 47 78.7
Oeu004186.1 Olea europaea HOM05D004044 ORTHO05D004841 1.5e-09 66.6 40 85.0
SHI52156 Sapria himalayana HOM05D004044 ORTHO05D004841 3.4e-09 65.5 102 43.1
COL.COLO4_18592 Corchorus olitorius HOM05D004044 ORTHO05D004841 5.0e-08 61.6 62 59.7


User provided reference genes

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