Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 9.7e-155 550.4 351 100.0
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 8.6e-143 510.8 351 90.6
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 7.2e-142 507.7 351 92.3
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 2.4e-137 492.7 269 95.2
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 1.7e-135 486.5 269 94.1
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 1.7e-135 486.5 269 94.1
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 8.0e-133 477.6 269 91.4
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 3.4e-131 472.2 266 91.0
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 1.7e-130 469.9 352 83.0
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 2.2e-130 469.5 265 90.9
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 3.2e-129 465.7 265 90.2
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 4.1e-129 465.3 265 90.2
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 9.2e-129 464.2 269 89.6
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 9.2e-129 464.2 269 89.6
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 1.6e-128 463.4 350 83.1
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 7.8e-128 461.1 269 88.1
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 1.0e-127 460.7 270 88.5
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 2.3e-127 459.5 268 89.6
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 1.5e-126 456.8 245 91.0
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.9e-126 456.4 278 86.7
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.9e-126 456.4 278 86.7
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 4.3e-126 455.3 240 92.9
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 9.5e-126 454.1 239 92.9
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 2.1e-125 453.0 271 88.9
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 1.5e-123 446.8 249 89.6
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 2.6e-123 446.0 240 91.2
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 2.6e-123 446.0 240 91.2
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 2.6e-123 446.0 267 88.0
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 4.4e-123 445.3 235 93.2
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 4.4e-123 445.3 237 91.6
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 5.8e-123 444.9 261 85.1
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 7.5e-123 444.5 278 84.2
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 1.3e-122 443.7 239 91.6
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 1.7e-122 443.4 239 91.2
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 8.3e-122 441.0 235 91.9
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 2.4e-121 439.5 239 90.4
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 3.2e-121 439.1 240 91.2
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 3.2e-121 439.1 262 85.9
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 4.1e-121 438.7 261 87.7
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 5.4e-121 438.3 268 84.7
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 5.4e-121 438.3 261 87.7
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 7.1e-121 438.0 228 93.9
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 7.1e-121 438.0 269 86.2
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 1.6e-120 436.8 239 89.1
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 2.7e-120 436.0 254 87.4
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 3.5e-120 435.6 261 87.7
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 6.0e-120 434.9 245 88.6
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 1.7e-119 433.3 230 91.7
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 1.7e-119 433.3 239 90.0
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 1.7e-119 433.3 239 89.1
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 3.9e-119 432.2 245 88.2
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 6.6e-119 431.4 222 94.6
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 6.6e-119 431.4 241 90.5
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 8.6e-119 431.0 246 88.2
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 1.9e-118 429.9 232 90.9
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 2.5e-118 429.5 245 86.9
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 3.3e-118 429.1 235 90.6
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 9.5e-118 427.6 286 81.8
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 9.5e-118 427.6 221 94.6
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 1.2e-117 427.2 271 85.2
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 1.2e-117 427.2 271 85.2
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 3.6e-117 425.6 257 84.0
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 3.6e-117 425.6 268 85.1
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 3.6e-117 425.6 268 85.1
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 3.6e-117 425.6 240 87.5
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 3.6e-117 425.6 222 93.2
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 3.6e-117 425.6 222 93.2
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 1.1e-116 424.1 268 83.2
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 1.8e-116 423.3 228 89.9
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 2.3e-116 422.9 244 87.7
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 2.3e-116 422.9 242 87.2
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 3.1e-116 422.5 220 93.6
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 3.1e-116 422.5 268 84.7
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 4.0e-116 422.2 244 87.3
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 4.0e-116 422.2 219 92.7
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 6.8e-116 421.4 228 89.9
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 1.5e-115 420.2 220 92.7
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 4.4e-115 418.7 239 88.7
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 1.3e-114 417.2 228 89.9
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 2.2e-114 416.4 228 89.0
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 2.2e-114 416.4 220 92.3
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 4.9e-114 415.2 222 91.0
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 8.3e-114 414.5 228 88.6
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 1.9e-113 413.3 231 87.4
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 2.7e-112 409.5 233 86.7
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 3.5e-112 409.1 336 69.3
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 3.0e-111 406.0 231 84.8
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 3.0e-111 406.0 231 84.8
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 3.9e-111 405.6 231 84.8
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 3.9e-111 405.6 231 84.8
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 5.1e-111 405.2 231 86.1
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 1.5e-110 403.7 241 83.4
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 3.3e-110 402.5 209 94.3
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 7.3e-110 401.4 232 86.2
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.1e-108 397.5 237 85.7
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.4e-108 397.1 233 85.8
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 1.2e-107 394.0 311 67.5
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 3.2e-105 386.0 241 80.5
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 4.2e-105 385.6 245 80.0
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 4.2e-105 385.6 242 81.8
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 7.1e-105 384.8 233 81.5
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 4.6e-104 382.1 264 75.4
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 4.6e-104 382.1 208 92.8
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 1.9e-102 376.7 241 79.3
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 5.4e-97 358.6 224 84.8
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 1.9e-94 350.1 241 75.1
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.7e-90 337.0 181 92.3
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 9.3e-89 331.3 342 55.0
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 1.5e-86 323.9 240 69.2
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 4.3e-86 322.4 236 69.1
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 1.6e-85 320.5 226 73.9
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 9.0e-84 314.7 176 88.1
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 3.2e-81 306.2 569 37.8
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 1.8e-79 300.4 265 66.0
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 1.6e-77 293.9 213 78.4
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 1.8e-76 290.4 219 65.8
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 1.4e-73 280.8 207 71.5
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 3.2e-73 279.6 263 63.1
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 6.7e-71 271.9 189 72.0
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 3.7e-69 266.2 148 87.2
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 2.6e-67 260.0 158 87.3
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 3.9e-63 246.1 132 90.9
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 4.5e-59 232.6 222 57.2
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 1.2e-56 224.6 198 62.1
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 3.9e-55 219.5 161 77.6
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 7.4e-54 215.3 107 98.1
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 2.8e-53 213.4 107 98.1
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 4.1e-52 209.5 108 94.4
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 2.0e-51 207.2 131 78.6
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 2.2e-50 203.8 108 88.9
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.2e-48 198.0 107 89.7
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.8e-47 194.1 106 90.6
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 5.2e-47 192.6 102 90.2
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 5.2e-47 192.6 130 81.5
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 1.1e-44 184.9 109 83.5
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 1.8e-44 184.1 92 95.7
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 4.1e-44 183.0 201 68.2
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 8.5e-42 175.3 95 90.5
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 7.2e-41 172.2 95 89.5
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.4e-39 167.9 138 67.4
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 1.8e-39 167.5 87 90.8
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 2.5e-33 147.1 83 84.3
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 1.4e-31 141.4 71 93.0
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 1.4e-31 141.4 71 93.0
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 2.5e-25 120.6 91 70.3
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 2.6e-22 110.5 58 89.7
Haze_13658 Corylus avellana HOM05D004689 ORTHO05D023802 1.8e-20 104.4 65 78.5
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 5.9e-19 99.4 144 49.3
Haze_05345 Corylus avellana HOM05D004689 ORTHO05D023802 6.4e-13 79.3 64 71.9
Haze_08645 Corylus avellana HOM05D004689 ORTHO05D023802 3.2e-12 77.0 61 68.9
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 5.0e-10 69.7 38 89.5
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 5.0e-10 69.7 103 46.6
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 8.6e-10 68.9 38 86.8
Haze_08899 Corylus avellana HOM05D004689 ORTHO05D165887 7.3e-09 65.9 62 59.7
MSTRG.5777 Avicennia marina HOM05D004689 ORTHO05D023802 8.1e-08 62.4 42 71.4
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 5.2e-07 59.7 45 64.4


User provided reference genes

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