Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 1.8e-187 659.1 332 100.0
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 1.8e-182 642.5 332 97.3
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 2.8e-175 618.6 332 93.7
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 9.2e-171 603.6 332 92.2
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 6.6e-169 597.4 332 89.2
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 2.5e-168 595.5 332 89.2
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 8.9e-166 587.0 332 88.6
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 8.9e-166 587.0 332 88.3
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 4.9e-164 581.3 333 86.5
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 8.3e-164 580.5 332 87.0
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 5.4e-163 577.8 332 86.1
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 7.3e-160 567.4 332 85.8
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 3.6e-159 565.1 332 84.9
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 8.1e-151 537.3 332 81.9
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 8.4e-148 527.3 334 78.4
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 6.6e-145 517.7 330 77.6
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 1.2e-143 513.5 333 75.7
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 2.1e-143 512.7 333 76.3
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 8.1e-143 510.8 333 77.2
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 3.1e-142 508.8 332 76.2
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 5.8e-141 504.6 330 75.2
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.2e-140 502.7 331 75.2
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 2.2e-140 502.7 337 76.0
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 2.9e-140 502.3 339 75.8
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 1.1e-139 500.4 334 77.5
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 7.1e-139 497.7 331 74.6
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 7.1e-139 497.7 334 74.9
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 9.3e-139 497.3 331 74.3
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.2e-138 496.9 332 74.4
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 1.6e-138 496.5 333 74.2
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 2.7e-138 495.7 333 75.4
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 2.7e-138 495.7 333 74.2
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 6.0e-138 494.6 335 75.2
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 7.8e-138 494.2 333 76.9
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 1.7e-137 493.0 330 74.8
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 3.0e-137 492.3 331 75.2
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 2.5e-136 489.2 333 73.9
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 3.3e-136 488.8 338 74.3
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 1.3e-135 486.9 333 72.7
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 3.6e-135 485.3 331 75.8
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 3.6e-135 485.3 331 75.8
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 3.6e-135 485.3 334 74.0
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 1.1e-134 483.8 338 74.3
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.1e-134 483.8 335 73.1
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 1.4e-134 483.4 336 74.4
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 5.3e-134 481.5 335 73.7
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 6.9e-134 481.1 335 73.4
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.2e-133 480.3 338 73.4
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.5e-133 479.9 318 74.5
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 2.6e-133 479.2 334 71.9
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 2.6e-133 479.2 331 73.4
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 5.8e-133 478.0 335 72.2
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 7.6e-133 477.6 333 73.0
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 1.3e-132 476.9 333 70.9
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.7e-132 476.5 335 71.9
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 2.9e-132 475.7 335 72.2
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 6.4e-132 474.6 335 72.2
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 8.4e-132 474.2 335 72.2
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 1.1e-131 473.8 338 71.9
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 1.9e-131 473.0 333 72.1
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.4e-131 472.6 335 71.9
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 4.6e-130 468.4 333 71.5
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 7.9e-130 467.6 335 71.6
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 1.3e-129 466.8 379 65.2
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 1.3e-129 466.8 341 71.6
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 2.3e-129 466.1 334 71.3
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 3.0e-129 465.7 339 70.5
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 3.0e-129 465.7 339 70.5
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 6.7e-129 464.5 324 71.3
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.1e-128 463.8 330 69.1
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 1.5e-128 463.4 338 68.9
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 2.5e-128 462.6 330 68.8
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 2.5e-128 462.6 341 68.9
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 3.3e-128 462.2 334 70.7
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 9.6e-128 460.7 338 68.9
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 3.7e-127 458.8 338 68.9
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 3.7e-127 458.8 338 68.9
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 8.1e-127 457.6 334 70.1
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 8.1e-127 457.6 339 70.5
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.1e-126 457.2 333 68.2
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 1.8e-126 456.4 338 68.3
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 2.4e-126 456.1 341 70.7
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.1e-126 455.7 330 69.1
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 3.1e-126 455.7 334 68.3
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 6.9e-126 454.5 323 71.5
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 2.0e-125 453.0 354 66.1
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 8.4e-124 447.6 340 69.1
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.9e-123 446.4 333 69.4
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 9.3e-123 444.1 334 68.9
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 1.6e-122 443.4 347 69.5
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.3e-121 440.3 330 67.0
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 1.8e-121 439.9 331 68.3
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 6.7e-121 438.0 328 68.9
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 6.7e-121 438.0 328 68.9
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 1.9e-120 436.4 339 68.1
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 3.3e-120 435.6 338 68.6
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 9.6e-120 434.1 339 66.1
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 3.7e-119 432.2 338 67.2
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 6.2e-119 431.4 334 65.9
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 9.0e-118 427.6 341 66.9
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 2.5e-115 419.5 339 65.5
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 1.6e-114 416.8 332 66.0
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 1.4e-110 403.7 355 63.1
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 4.5e-109 398.7 358 62.6
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 5.5e-107 391.7 263 75.3
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.3e-105 387.1 337 62.0
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 1.1e-104 384.0 353 60.6
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 2.2e-103 379.8 352 58.8
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 6.3e-103 378.3 321 65.4
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 6.9e-102 374.8 343 59.2
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 1.2e-101 374.0 284 69.7
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 1.7e-100 370.2 342 58.2
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 1.0e-97 360.9 328 57.6
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 2.3e-97 359.8 334 58.4
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 3.0e-97 359.4 356 58.4
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 1.6e-90 337.0 319 58.0
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.6e-85 319.7 230 70.4
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 9.4e-83 311.2 254 65.4
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 6.7e-81 305.1 187 81.8
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 2.2e-76 290.0 245 63.7
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 4.0e-73 279.3 211 69.2
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 3.7e-71 272.7 365 45.8
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 9.1e-70 268.1 267 59.2
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 2.0e-64 250.4 190 68.9
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 1.9e-59 233.8 382 43.2
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 4.3e-59 232.6 358 41.6
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 2.8e-58 229.9 354 43.8
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 6.8e-57 225.3 363 41.3
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 2.7e-53 213.4 213 54.9
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 1.0e-52 211.5 352 42.3
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 5.2e-49 199.1 223 51.6
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 2.7e-45 186.8 173 52.0
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 1.1e-43 181.4 367 36.8
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 7.8e-37 158.7 375 33.6
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 1.6e-34 151.0 342 35.7
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 7.1e-30 135.6 106 67.9
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 7.3e-27 125.6 348 32.5
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 1.2e-26 124.8 147 49.7
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 1.4e-25 121.3 140 47.9
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 3.4e-24 116.7 125 51.2
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 3.8e-23 113.2 103 60.2
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 8.4e-23 112.1 106 53.8
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.9e-22 110.9 85 63.5
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 1.9e-22 110.9 81 61.7
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 6.0e-21 105.9 81 59.3
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 1.2e-16 91.7 148 32.4
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 2.9e-15 87.0 54 75.9
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 3.8e-15 86.7 80 57.5
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 4.9e-15 86.3 65 70.8
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 8.4e-15 85.5 343 26.5
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 1.2e-13 81.6 73 54.8
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 7.9e-13 79.0 40 87.5
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.4e-09 68.2 98 38.8
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 3.1e-09 67.0 172 27.3
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 2.0e-08 64.3 53 56.6
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.1e-06 58.5 43 62.8
ATR0019G039 Amborella trichopoda HOM05D004877 ORTHO05D005942 9.3e-06 55.5 75 49.3


User provided reference genes

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