Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 9.8e-231 803.1 411 100.0
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 4.0e-224 781.2 411 97.3
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 1.9e-218 762.3 411 95.1
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 2.8e-217 758.4 411 94.9
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 6.0e-212 740.7 411 91.2
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 3.4e-207 724.9 411 90.0
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.3e-206 723.0 411 89.3
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.1e-205 719.9 411 89.1
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 4.1e-205 718.0 411 87.6
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 4.3e-202 708.0 411 86.9
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 1.5e-199 699.5 411 86.9
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 1.5e-199 699.5 411 84.9
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 9.9e-199 696.8 411 84.4
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 2.9e-198 695.3 411 85.4
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 1.4e-197 693.0 410 85.6
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 7.1e-197 690.6 411 84.2
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 1.6e-196 689.5 411 85.2
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 1.6e-196 689.5 411 83.9
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 6.0e-196 687.6 410 84.9
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 7.8e-196 687.2 411 83.7
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 1.7e-195 686.0 410 84.4
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 5.1e-195 684.5 409 84.4
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 8.6e-195 683.7 411 83.9
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 1.1e-194 683.3 411 83.9
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 1.9e-194 682.6 413 84.3
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 4.3e-194 681.4 409 85.1
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 4.3e-194 681.4 411 82.7
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 5.6e-194 681.0 411 83.0
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 5.6e-194 681.0 411 83.0
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 2.1e-193 679.1 412 84.5
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 8.1e-193 677.2 442 78.7
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 1.1e-192 676.8 411 83.2
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 1.8e-192 676.0 409 83.4
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 3.1e-192 675.2 409 83.9
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 5.2e-192 674.5 411 81.8
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 6.8e-192 674.1 411 83.0
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 8.9e-192 673.7 411 83.0
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 8.9e-192 673.7 411 82.2
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.0e-191 672.5 411 81.8
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 2.6e-191 672.2 411 82.5
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 2.6e-191 672.2 411 81.5
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.4e-191 671.8 411 81.5
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 7.6e-191 670.6 411 81.5
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 2.9e-190 668.7 410 82.4
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 1.1e-189 666.8 411 81.8
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 3.2e-189 665.2 411 81.3
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.2e-189 665.2 411 80.5
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 5.4e-189 664.5 409 80.7
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 7.1e-189 664.1 413 82.3
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 9.3e-189 663.7 411 79.8
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 1.2e-188 663.3 411 80.0
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 4.6e-188 661.4 411 80.0
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 1.3e-187 659.8 411 81.3
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 3.0e-187 658.7 411 81.5
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 5.1e-187 657.9 411 80.8
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 8.7e-187 657.1 411 80.5
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.5e-186 656.4 411 80.8
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 1.9e-186 656.0 411 80.5
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.9e-186 656.0 411 79.8
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 2.5e-186 655.6 411 80.0
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 3.3e-186 655.2 411 80.5
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 3.3e-186 655.2 411 80.0
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 3.3e-186 655.2 411 80.0
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 3.3e-186 655.2 411 80.3
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 4.3e-186 654.8 409 79.7
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 5.6e-186 654.4 411 79.3
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 2.8e-185 652.1 411 80.0
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 3.6e-185 651.7 411 80.5
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 6.2e-185 651.0 411 80.3
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.4e-184 649.8 411 79.6
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 1.4e-184 649.8 418 78.5
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 1.8e-184 649.4 411 80.0
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 2.4e-184 649.0 411 80.3
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.4e-184 649.0 417 78.9
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 5.8e-183 644.4 411 79.1
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 5.8e-183 644.4 403 82.4
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 4.9e-182 641.3 423 77.8
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 4.9e-182 641.3 423 77.8
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 8.4e-182 640.6 423 77.5
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 4.2e-181 638.3 407 80.1
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 5.1e-179 631.3 411 78.6
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 1.5e-178 629.8 429 75.8
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 3.6e-177 625.2 435 74.3
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 8.1e-177 624.0 408 77.2
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 4.0e-176 621.7 411 77.4
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 1.2e-175 620.2 412 75.2
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 4.9e-174 614.8 412 75.5
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.4e-173 613.2 412 74.8
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.6e-172 609.8 371 83.0
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 1.6e-172 609.8 411 72.3
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.8e-171 606.3 367 83.4
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 4.8e-169 598.2 413 74.6
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 1.1e-165 587.0 409 75.1
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 2.7e-164 582.4 410 73.2
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 4.8e-161 571.6 409 70.7
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 9.0e-160 567.4 411 71.5
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 7.6e-159 564.3 403 68.7
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 3.5e-156 555.4 368 78.0
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 8.7e-155 550.8 323 86.1
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 3.1e-152 542.3 415 68.4
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 1.0e-150 537.3 482 62.2
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 4.6e-148 528.5 405 62.7
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.5e-146 523.5 398 65.1
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.7e-145 520.0 408 67.6
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 3.6e-140 502.3 406 62.1
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.7e-137 493.4 294 85.0
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 2.2e-137 493.0 293 83.3
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 8.2e-137 491.1 294 84.7
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 4.1e-136 488.8 305 79.7
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.2e-126 456.4 257 89.9
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 9.4e-117 424.5 256 82.0
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 6.3e-113 411.8 314 68.5
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.3e-110 404.1 282 71.6
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 3.3e-109 399.4 313 66.8
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 2.1e-100 370.2 292 69.9
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 1.4e-99 367.5 284 67.3
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 2.2e-97 360.1 402 47.0
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 2.3e-91 340.1 191 90.1
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.9e-81 306.6 238 66.8
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 3.2e-80 303.1 205 75.6
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 2.2e-73 280.4 182 75.3
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 2.2e-73 280.4 173 80.3
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.8e-71 271.9 199 68.8
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-64 251.5 204 65.7
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 1.2e-63 248.1 402 35.8
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.0e-58 230.7 140 83.6
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 5.8e-58 229.2 406 34.2
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 1.1e-56 224.9 217 58.1
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 1.8e-54 217.6 322 35.4
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 7.4e-53 212.2 121 84.3
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.0e-50 204.1 126 79.4
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.9e-45 187.6 196 57.7
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 7.4e-45 185.7 102 88.2
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-40 171.8 158 60.1
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.6e-39 166.4 174 55.2
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 6.3e-36 156.0 83 90.4
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 9.0e-35 152.1 411 30.4
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 4.2e-32 143.3 111 64.9
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.2e-31 141.7 107 59.8
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 7.9e-31 139.0 71 93.0
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 4.5e-26 123.2 115 60.0
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.0e-18 97.8 51 92.2
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 1.0e-17 95.5 158 38.6
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 2.2e-17 94.4 99 55.6
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 6.5e-17 92.8 127 50.4
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 8.5e-17 92.4 179 41.3
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 6.7e-14 82.8 146 43.2
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 1.1e-13 82.0 54 81.5
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-11 75.5 50 72.0
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.3e-11 73.2 68 57.4
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 7.7e-10 69.3 57 63.2
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 1.7e-09 68.2 81 48.1
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 1.9e-08 64.7 38 81.6


User provided reference genes

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