Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G084233 Glycine max HOM05D000929 ORTHO05D004137 5.1e-87 324.3 157 100.0
Duzib150G0964 Durio zibethinus HOM05D000929 ORTHO05D004137 6.5e-66 254.2 143 83.2
Glyma.12G180600 Glycine max HOM05D000929 ORTHO05D004137 6.5e-66 254.2 143 81.8
Lalb_Chr22g0350571 Lupinus albus HOM05D000929 ORTHO05D004137 8.4e-66 253.8 143 81.8
Glyma.13G320200 Glycine max HOM05D000929 ORTHO05D004137 1.4e-65 253.1 143 81.8
Lalb_Chr14g0374281 Lupinus albus HOM05D000929 ORTHO05D004137 1.4e-65 253.1 143 81.8
Haze_23466 Corylus avellana HOM05D000929 ORTHO05D004137 1.9e-65 252.7 143 81.1
Cfa010100 Carpinus fangiana HOM05D000929 ORTHO05D004137 2.5e-65 252.3 143 80.4
Gohir.A09G092000 Gossypium hirsutum HOM05D000929 ORTHO05D004137 4.2e-65 251.5 143 81.1
Gohir.D09G091900 Gossypium hirsutum HOM05D000929 ORTHO05D004137 4.2e-65 251.5 143 81.1
Gorai.006G108500 Gossypium raimondii HOM05D000929 ORTHO05D004137 4.2e-65 251.5 143 81.1
Lj3g0021930 Lotus japonicus HOM05D000929 ORTHO05D004137 7.1e-65 250.8 143 81.1
arahy.Tifrunner.gnm1.ann1.F9AZ7P Arachis hypogaea HOM05D000929 ORTHO05D004137 1.2e-64 250.0 143 79.7
arahy.Tifrunner.gnm1.ann1.MS8XLG Arachis hypogaea HOM05D000929 ORTHO05D004137 1.2e-64 250.0 143 79.7
Psat5g254120 Pisum sativum HOM05D000929 ORTHO05D004137 1.2e-64 250.0 143 80.4
CiPaw.14G104400 Carya illinoinensis HOM05D000929 ORTHO05D004137 2.1e-64 249.2 143 79.7
Duzib170G1132 Durio zibethinus HOM05D000929 ORTHO05D004137 2.1e-64 249.2 143 80.4
Medtr2g084610 Medicago truncatula HOM05D000929 ORTHO05D004137 2.1e-64 249.2 143 80.4
Phvul.005G128200 Phaseolus vulgaris HOM05D000929 ORTHO05D004137 2.1e-64 249.2 143 81.1
Thecc.09G293300 Theobroma cacao HOM05D000929 ORTHO05D004137 2.7e-64 248.8 143 80.4
Ciclev10027737m.g Citrus clementina HOM05D000929 ORTHO05D004137 4.6e-64 248.1 143 79.7
Duzib168G0512 Durio zibethinus HOM05D000929 ORTHO05D004137 4.6e-64 248.1 143 81.1
VMungo1080G1504 Vigna mungo HOM05D000929 ORTHO05D004137 6.0e-64 247.7 143 80.4
Lalb_Chr24g0395091 Lupinus albus HOM05D000929 ORTHO05D004137 7.9e-64 247.3 143 81.1
Ca_01687_v3 Cicer arietinum L. HOM05D000929 ORTHO05D004137 1.3e-63 246.5 143 78.3
Gohir.A08G003300 Gossypium hirsutum HOM05D000929 ORTHO05D004137 1.3e-63 246.5 143 79.7
Gohir.D08G013700 Gossypium hirsutum HOM05D000929 ORTHO05D004137 1.3e-63 246.5 143 79.7
Gorai.004G008000 Gossypium raimondii HOM05D000929 ORTHO05D004137 1.3e-63 246.5 143 79.7
Nn2g13966 Nelumbo nucifera HOM05D000929 ORTHO05D004137 1.3e-63 246.5 143 80.4
Manes.04G010400 Manihot esculenta HOM05D000929 ORTHO05D004137 1.8e-63 246.1 143 81.1
Potri.004G189700 Populus trichocarpa HOM05D000929 ORTHO05D004137 1.8e-63 246.1 143 80.4
MD03G1132700 Malus domestica HOM05D000929 ORTHO05D004137 2.3e-63 245.7 143 79.7
Manes.11G155700 Manihot esculenta HOM05D000929 ORTHO05D004137 2.3e-63 245.7 143 81.1
Prupe.6G117500 Prunus persica HOM05D000929 ORTHO05D004137 2.3e-63 245.7 143 79.0
TAR636G1238 Trochodendron aralioides HOM05D000929 ORTHO05D004137 2.3e-63 245.7 143 79.7
Nitab4.5_0004926g0020 Nicotiana tabacum HOM05D000929 ORTHO05D004137 3.9e-63 245.0 143 76.2
QL01p014018 Quercus lobata HOM05D000929 ORTHO05D004137 5.1e-63 244.6 143 78.3
TPR.G32382 Trifolium pratense HOM05D000929 ORTHO05D004137 5.1e-63 244.6 143 79.0
Cc01_g09940 Coffea canephora HOM05D000929 ORTHO05D004137 6.7e-63 244.2 143 79.0
Dinv29411 Davidia involucrata HOM05D000929 ORTHO05D004137 8.7e-63 243.8 143 79.0
COL.COLO4_19274 Corchorus olitorius HOM05D000929 ORTHO05D004137 1.5e-62 243.0 143 79.0
MD11G1155000 Malus domestica HOM05D000929 ORTHO05D004137 1.9e-62 242.7 143 78.3
RcHm_v2.0_Chr5g0055751 Rosa chinensis HOM05D000929 ORTHO05D004137 1.9e-62 242.7 143 78.3
Sed0000238 Sechium edule HOM05D000929 ORTHO05D004137 3.3e-62 241.9 143 76.9
Actinidia03683 Actinidia chinensis HOM05D000929 ORTHO05D004137 4.3e-62 241.5 143 79.0
Nitab4.5_0003470g0070 Nicotiana tabacum HOM05D000929 ORTHO05D004137 4.3e-62 241.5 143 74.8
Potri.009G150300 Populus trichocarpa HOM05D000929 ORTHO05D004137 4.3e-62 241.5 143 79.0
CiPaw.13G142000 Carya illinoinensis HOM05D000929 ORTHO05D004137 5.7e-62 241.1 143 76.9
GSVIVG01031413001 Vitis vinifera HOM05D000929 ORTHO05D004137 7.4e-62 240.7 143 79.0
FAN16G3173 Fragaria x ananassa HOM05D000929 ORTHO05D004137 9.7e-62 240.4 143 78.3
FAN25G1715 Fragaria x ananassa HOM05D000929 ORTHO05D004137 9.7e-62 240.4 143 78.3
Sabra04G0128300 Salix brachista HOM05D000929 ORTHO05D004137 9.7e-62 240.4 142 79.6
Rhsim13G0104500 Rhododendron simsii HOM05D000929 ORTHO05D004137 1.6e-61 239.6 143 77.6
arahy.Tifrunner.gnm1.ann1.JFAW9R Arachis hypogaea HOM05D000929 ORTHO05D004137 2.1e-61 239.2 143 77.6
arahy.Tifrunner.gnm1.ann1.SC897I Arachis hypogaea HOM05D000929 ORTHO05D004137 2.1e-61 239.2 143 77.6
TAR633G0080 Trochodendron aralioides HOM05D000929 ORTHO05D004137 2.1e-61 239.2 143 76.9
AUR62023959 Chenopodium quinoa HOM05D000929 ORTHO05D004137 2.8e-61 238.8 143 76.2
FvH4_3g30090 Fragaria vesca HOM05D000929 ORTHO05D004137 2.8e-61 238.8 143 78.3
CAN.G919.3 Capsicum annuum HOM05D000929 ORTHO05D004137 3.7e-61 238.4 143 76.2
Oeu010644.1 Olea europaea HOM05D000929 ORTHO05D004137 3.7e-61 238.4 143 76.9
vmacro03226 Vaccinium macrocarpon HOM05D000929 ORTHO05D004137 3.7e-61 238.4 143 76.9
vmacro23023 Vaccinium macrocarpon HOM05D000929 ORTHO05D004137 3.7e-61 238.4 143 76.9
Ah.01g016700 Amaranthus hybridus HOM05D000929 ORTHO05D004137 4.8e-61 238.0 143 77.6
TWI31G0368 Tripterygium wilfordii HOM05D000929 ORTHO05D004137 6.3e-61 237.7 143 75.5
Actinidia24174 Actinidia chinensis HOM05D000929 ORTHO05D004137 8.2e-61 237.3 143 78.3
DCAR_018747 Daucus carota HOM05D000929 ORTHO05D004137 8.2e-61 237.3 143 74.8
Sabra09G0119000 Salix brachista HOM05D000929 ORTHO05D004137 8.2e-61 237.3 143 77.6
Sc21g0004640 Simmondsia chinensis HOM05D000929 ORTHO05D004137 8.2e-61 237.3 143 75.5
SGA_v2.0_scaffold27G11598 Striga asiatica HOM05D000929 ORTHO05D004137 8.2e-61 237.3 143 77.6
THA.LOC104799529 Tarenaya hassleriana HOM05D000929 ORTHO05D004137 1.1e-60 236.9 143 76.9
FAN11G0593 Fragaria x ananassa HOM05D000929 ORTHO05D004137 1.4e-60 236.5 141 78.0
Lj1A219G36 Lonicera japonica HOM05D000929 ORTHO05D004137 1.4e-60 236.5 143 75.5
Solyc06g074650.3 Solanum lycopersicum HOM05D000929 ORTHO05D004137 1.4e-60 236.5 143 75.5
Sopen06g031070 Solanum pennellii HOM05D000929 ORTHO05D004137 1.4e-60 236.5 143 75.5
Peaxi162Scf00157g00039 Petunia axillaris HOM05D000929 ORTHO05D004137 1.8e-60 236.1 143 74.8
AUR62031755 Chenopodium quinoa HOM05D000929 ORTHO05D004137 2.4e-60 235.7 143 75.5
Peaxi162Scf00789g00218 Petunia axillaris HOM05D000929 ORTHO05D004137 2.4e-60 235.7 143 76.2
SHI06141 Sapria himalayana HOM05D000929 ORTHO05D004137 2.4e-60 235.7 141 78.0
Atru.chr3.3401 Acer truncatum HOM05D000929 ORTHO05D004137 3.1e-60 235.3 143 76.9
Oeu008377.1 Olea europaea HOM05D000929 ORTHO05D004137 3.1e-60 235.3 143 76.2
EL10Ac9g21056 Beta vulgaris HOM05D000929 ORTHO05D004137 4.1e-60 235.0 143 74.1
THA.LOC104814807 Tarenaya hassleriana HOM05D000929 ORTHO05D004137 4.1e-60 235.0 143 75.5
TWI79G0614 Tripterygium wilfordii HOM05D000929 ORTHO05D004137 4.1e-60 235.0 143 75.5
Aa31LG4G14280 Aethionema arabicum HOM05D000929 ORTHO05D004137 5.3e-60 234.6 143 76.2
CANSAT64G1824 Cannabis sativa HOM05D000929 ORTHO05D004137 5.3e-60 234.6 143 72.7
Aa31LG1G12920 Aethionema arabicum HOM05D000929 ORTHO05D004137 6.9e-60 234.2 144 71.5
THA.LOC104810893 Tarenaya hassleriana HOM05D000929 ORTHO05D004137 6.9e-60 234.2 143 75.5
MELO3C021463.2 Cucumis melo HOM05D000929 ORTHO05D004137 9.0e-60 233.8 143 75.5
CSS0004620 Camellia sinensis var. sinensis HOM05D000929 ORTHO05D004137 1.2e-59 233.4 143 76.2
Actinidia07205 Actinidia chinensis HOM05D000929 ORTHO05D004137 2.0e-59 232.6 143 77.6
BcaC09g49654 Brassica carinata HOM05D000929 ORTHO05D004137 2.0e-59 232.6 143 74.8
CDE02G4539 Ceratophyllum demersum HOM05D000929 ORTHO05D004137 2.0e-59 232.6 143 74.8
Dinv12535 Davidia involucrata HOM05D000929 ORTHO05D004137 2.0e-59 232.6 143 75.5
SalBow6G6633 Salvia bowleyana HOM05D000929 ORTHO05D004137 2.0e-59 232.6 143 74.1
CDE04G0670 Ceratophyllum demersum HOM05D000929 ORTHO05D004137 2.6e-59 232.3 143 74.8
CsaV3_6G014610 Cucumis sativus L. HOM05D000929 ORTHO05D004137 3.4e-59 231.9 143 74.8
CARHR151250 Cardamine hirsuta HOM05D000929 ORTHO05D004137 4.5e-59 231.5 143 72.7
Hma1.2p1_0051F.1_g029810 Hydrangea macrophylla HOM05D000929 ORTHO05D004137 4.5e-59 231.5 143 74.1
ATR0820G043 Amborella trichopoda HOM05D000929 ORTHO05D004137 5.9e-59 231.1 143 75.5
Hund00800 Selenicereus undatus HOM05D000929 ORTHO05D004137 5.9e-59 231.1 143 74.1
Sopen11g026490 Solanum pennellii HOM05D000929 ORTHO05D004137 5.9e-59 231.1 143 74.1
CAN.G644.41 Capsicum annuum HOM05D000929 ORTHO05D004137 7.6e-59 230.7 143 74.8
vmacro14382 Vaccinium macrocarpon HOM05D000929 ORTHO05D004137 7.6e-59 230.7 143 74.8
A01p26810 Brassica napus HOM05D000929 ORTHO05D004137 1.0e-58 230.3 144 75.0
C01p34170 Brassica napus HOM05D000929 ORTHO05D004137 1.0e-58 230.3 144 75.0
BolC1t03387H Brassica oleracea HOM05D000929 ORTHO05D004137 1.0e-58 230.3 144 75.0
BraA01t02610Z Brassica rapa HOM05D000929 ORTHO05D004137 1.0e-58 230.3 144 75.0
Sed0008575 Sechium edule HOM05D000929 ORTHO05D004137 1.3e-58 229.9 143 72.7
Solyc11g066770.3 Solanum lycopersicum HOM05D000929 ORTHO05D004137 1.3e-58 229.9 143 73.4
DCAR_015485 Daucus carota HOM05D000929 ORTHO05D004137 1.7e-58 229.6 143 72.0
Lj2C996G14 Lonicera japonica HOM05D000929 ORTHO05D004137 1.7e-58 229.6 144 75.0
Rhsim01G0209300 Rhododendron simsii HOM05D000929 ORTHO05D004137 2.2e-58 229.2 143 74.8
Thhalv10012556m.g Eutrema salsugineum HOM05D000929 ORTHO05D004137 8.5e-58 227.3 143 72.0
HanXRQChr13g0396891 Helianthus annuus HOM05D000929 ORTHO05D004137 1.1e-57 226.9 143 70.6
Aqoxy2G01493 Aquilegia oxysepala HOM05D000929 ORTHO05D004137 1.4e-57 226.5 143 73.4
PGR119G0792 Punica granatum HOM05D000929 ORTHO05D004137 1.4e-57 226.5 143 72.7
Migut.D02325 Erythranthe guttata HOM05D000929 ORTHO05D004137 4.2e-57 224.9 143 72.7
Migut.O00583 Erythranthe guttata HOM05D000929 ORTHO05D004137 4.2e-57 224.9 143 72.7
Lsat_1_v5_gn_6_42741 Lactuca sativa HOM05D000929 ORTHO05D004137 1.6e-56 223.0 143 72.0
Eucgr.J00415 Eucalyptus grandis HOM05D000929 ORTHO05D004137 2.1e-56 222.6 143 71.3
HPP92_028038 Vanilla planifolia HOM05D000929 ORTHO05D004137 3.6e-56 221.9 143 74.1
AL6G33770 Arabidopsis lyrata HOM05D000929 ORTHO05D004137 4.6e-56 221.5 140 70.7
Carub.0006s2048 Capsella rubella HOM05D000929 ORTHO05D004137 4.6e-56 221.5 140 70.7
AT5G22780 Arabidopsis thaliana HOM05D000929 ORTHO05D004137 6.1e-56 221.1 140 70.7
AT5G22770 Arabidopsis thaliana HOM05D000929 ORTHO05D004137 1.0e-55 220.3 140 70.7
A10p18250 Brassica napus HOM05D000929 ORTHO05D004137 2.3e-55 219.2 143 69.9
C09p53880 Brassica napus HOM05D000929 ORTHO05D004137 2.3e-55 219.2 143 69.9
BolC9t58261H Brassica oleracea HOM05D000929 ORTHO05D004137 2.3e-55 219.2 143 69.9
BraA10t43900Z Brassica rapa HOM05D000929 ORTHO05D004137 2.3e-55 219.2 143 69.9
Carub.0006s2049 Capsella rubella HOM05D000929 ORTHO05D004137 2.3e-55 219.2 140 70.7
AL6G33800 Arabidopsis lyrata HOM05D000929 ORTHO05D004137 3.9e-55 218.4 140 70.0
PSO384G2211 Papaver somniferum HOM05D000929 ORTHO05D004137 8.7e-55 217.2 143 69.9
PSO339G3653 Papaver somniferum HOM05D000929 ORTHO05D004137 1.1e-54 216.9 143 69.2
ECA233G5521 Erigeron canadensis HOM05D000929 ORTHO05D004137 3.3e-54 215.3 143 69.2
ECA238G1224 Erigeron canadensis HOM05D000929 ORTHO05D004137 5.7e-54 214.5 143 69.2
HanXRQChr14g0451931 Helianthus annuus HOM05D000929 ORTHO05D004137 1.3e-53 213.4 143 67.8
Cpa.g.sc47.59 Carica papaya HOM05D000929 ORTHO05D004137 8.2e-53 210.7 143 69.9
CARHR190820 Cardamine hirsuta HOM05D000929 ORTHO05D004137 1.4e-52 209.9 143 67.1
Zm00001eb000860 Zea mays HOM05D000929 ORTHO05D004137 4.1e-52 208.4 151 66.9
CSS0041991 Camellia sinensis var. sinensis HOM05D000929 ORTHO05D004137 1.5e-51 206.5 143 67.8
SEGI_29219 Sequoiadendron giganteum HOM05D000929 ORTHO05D004137 1.5e-51 206.5 143 67.1
Zm00001eb404080 Zea mays HOM05D000929 ORTHO05D004137 7.7e-51 204.1 143 68.5
vmacro02549 Vaccinium macrocarpon HOM05D000929 ORTHO05D004137 3.8e-50 201.8 136 72.1
FAN21G3154 Fragaria x ananassa HOM05D000929 ORTHO05D004137 1.4e-44 183.3 143 64.3
Lsat_1_v5_gn_2_96621 Lactuca sativa HOM05D000929 ORTHO05D004137 1.6e-40 169.9 114 67.5
Pp3c17_6470 Physcomitrium patens HOM05D000929 ORTHO05D004137 1.0e-39 167.2 143 55.2
Pp3c17_2250 Physcomitrium patens HOM05D000929 ORTHO05D004137 3.9e-39 165.2 143 51.7
Mapoly0072s0011 Marchantia polymorpha HOM05D000929 ORTHO05D004137 5.2e-39 164.9 143 53.1
AagrBONN_evm.TU.Sc2ySwM_344.3846 Anthoceros agrestis HOM05D000929 ORTHO05D004137 1.5e-38 163.3 143 54.5
Pp3c1_29560 Physcomitrium patens HOM05D000929 ORTHO05D004137 9.1e-36 154.1 143 51.7
CBR_g29503 Chara braunii HOM05D000929 ORTHO05D004137 6.7e-31 137.9 142 45.8
SMO353G0315 Selaginella moellendorffii HOM05D000929 ORTHO05D004137 7.5e-30 134.4 116 50.0
SMO203G0076 Selaginella moellendorffii HOM05D000929 ORTHO05D004137 3.1e-28 129.0 143 41.3
Sp5g15820 Schrenkiella parvula HOM05D000929 ORTHO05D004137 6.5e-26 121.3 143 44.8
Sp6g22650 Schrenkiella parvula HOM05D000929 ORTHO05D004137 1.5e-22 110.2 143 42.0
SGA_v2.0_scaffold193G40716 Striga asiatica HOM05D000929 ORTHO05D004137 1.6e-19 100.1 59 72.9
unitig_27.g25115 Utricularia gibba HOM05D000929 ORTHO05D004137 2.3e-18 96.3 143 42.0
HPP92_027615 Vanilla planifolia HOM05D000929 ORTHO05D004137 3.8e-18 95.5 54 77.8
ClCG02G021820 Citrullus lanatus HOM05D000929 ORTHO05D004137 4.2e-17 92.0 143 38.5
Nitab4.5_0002571g0040 Nicotiana tabacum HOM05D000929 ORTHO05D004137 5.5e-17 91.7 60 70.0
PRCOL_00005986 Prasinoderma coloniale HOM05D000929 ORTHO05D004137 2.1e-16 89.7 145 35.2
Psat0ss4737g0120 Pisum sativum HOM05D000929 ORTHO05D016375 1.5e-14 83.6 46 84.8
Nitab4.5_0000442g0230 Nicotiana tabacum HOM05D000929 ORTHO05D004137 3.7e-13 79.0 143 37.1
Psat1g032240 Pisum sativum HOM05D000929 ORTHO05D016375 8.3e-13 77.8 64 65.6
COL.COLO4_18716 Corchorus olitorius HOM05D000929 ORTHO05D004137 5.4e-12 75.1 112 37.5
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 1.2e-11 73.9 85 49.4
Cre12.g488850 Chlamydomonas reinhardtii HOM05D000929 ORTHO05D004137 7.8e-11 71.2 146 28.8
MCO16G250 Micromonas commoda HOM05D000929 ORTHO05D004137 5.6e-09 65.1 144 28.5
Psat2g029320 Pisum sativum HOM05D003688 ORTHO05D017064 5.6e-09 65.1 38 71.1
Cfa026228 Carpinus fangiana HOM05D000929 ORTHO05D004137 9.5e-09 64.3 136 29.4
Lsat_1_v5_gn_1_124901 Lactuca sativa HOM05D000929 ORTHO05D002953 4.7e-08 62.0 43 67.4
Actinidia03200 Actinidia chinensis HOM05D000929 ORTHO05D054180 3.0e-07 59.3 94 41.5


User provided reference genes

Program Settings