Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G084167 Glycine max HOM05D000929 ORTHO05D004137 3.3e-17 90.5 42 100.0
Rhsim01G0209300 Rhododendron simsii HOM05D000929 ORTHO05D004137 3.2e-12 73.9 39 89.7
vmacro14382 Vaccinium macrocarpon HOM05D000929 ORTHO05D004137 3.2e-12 73.9 39 89.7
Lj2C996G14 Lonicera japonica HOM05D000929 ORTHO05D004137 4.2e-12 73.6 39 89.7
Lalb_Chr14g0374291 Lupinus albus HOM05D000929 ORTHO05D004137 4.2e-12 73.6 39 89.7
Potri.004G189700 Populus trichocarpa HOM05D000929 ORTHO05D004137 7.1e-12 72.8 39 89.7
Actinidia07205 Actinidia chinensis HOM05D000929 ORTHO05D004137 9.3e-12 72.4 39 89.7
arahy.Tifrunner.gnm1.ann1.F9AZ7P Arachis hypogaea HOM05D000929 ORTHO05D004137 9.3e-12 72.4 39 89.7
arahy.Tifrunner.gnm1.ann1.MS8XLG Arachis hypogaea HOM05D000929 ORTHO05D004137 9.3e-12 72.4 39 89.7
CDE02G4539 Ceratophyllum demersum HOM05D000929 ORTHO05D004137 9.3e-12 72.4 39 89.7
CDE04G0670 Ceratophyllum demersum HOM05D000929 ORTHO05D004137 9.3e-12 72.4 39 89.7
Ca_01687_v3 Cicer arietinum L. HOM05D000929 ORTHO05D004137 9.3e-12 72.4 39 89.7
Haze_23466 Corylus avellana HOM05D000929 ORTHO05D004137 9.3e-12 72.4 40 85.0
Glyma.12G180600 Glycine max HOM05D000929 ORTHO05D004137 9.3e-12 72.4 39 89.7
Glyma.13G320200 Glycine max HOM05D000929 ORTHO05D004137 9.3e-12 72.4 39 89.7
Lj1A219G36 Lonicera japonica HOM05D000929 ORTHO05D004137 9.3e-12 72.4 39 89.7
Lalb_Chr22g0350571 Lupinus albus HOM05D000929 ORTHO05D004137 9.3e-12 72.4 39 89.7
Medtr2g084610 Medicago truncatula HOM05D000929 ORTHO05D004137 9.3e-12 72.4 39 89.7
Nitab4.5_0002571g0040 Nicotiana tabacum HOM05D000929 ORTHO05D004137 9.3e-12 72.4 39 89.7
Oeu008377.1 Olea europaea HOM05D000929 ORTHO05D004137 9.3e-12 72.4 39 89.7
Oeu010644.1 Olea europaea HOM05D000929 ORTHO05D004137 9.3e-12 72.4 39 89.7
Phvul.005G128200 Phaseolus vulgaris HOM05D000929 ORTHO05D004137 9.3e-12 72.4 39 89.7
Psat5g254120 Pisum sativum HOM05D000929 ORTHO05D004137 9.3e-12 72.4 39 89.7
PGR119G0792 Punica granatum HOM05D000929 ORTHO05D004137 9.3e-12 72.4 39 89.7
Rhsim13G0104500 Rhododendron simsii HOM05D000929 ORTHO05D004137 9.3e-12 72.4 39 89.7
TPR.G32382 Trifolium pratense HOM05D000929 ORTHO05D004137 9.3e-12 72.4 39 89.7
VMungo1080G1504 Vigna mungo HOM05D000929 ORTHO05D004137 9.3e-12 72.4 39 89.7
CANSAT64G1824 Cannabis sativa HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
CAN.G644.41 Capsicum annuum HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
CAN.G919.3 Capsicum annuum HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
Cfa010100 Carpinus fangiana HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
CiPaw.14G104400 Carya illinoinensis HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
ClCG02G021820 Citrullus lanatus HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
Cc01_g09940 Coffea canephora HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
MELO3C021463.2 Cucumis melo HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
CsaV3_6G014610 Cucumis sativus L. HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
Dinv12535 Davidia involucrata HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
Duzib150G0964 Durio zibethinus HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
Duzib170G1132 Durio zibethinus HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
Migut.D02325 Erythranthe guttata HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
Eucgr.J00415 Eucalyptus grandis HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
Hma1.2p1_0051F.1_g029810 Hydrangea macrophylla HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
MBI17_g45825_MAGBIO Magnolia biondii HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
MD03G1132700 Malus domestica HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
Prupe.6G117500 Prunus persica HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
QL01p014018 Quercus lobata HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
RcHm_v2.0_Chr5g0055751 Rosa chinensis HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
Sabra09G0119000 Salix brachista HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
Solyc06g074650.3 Solanum lycopersicum HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
Solyc11g066770.3 Solanum lycopersicum HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
Sopen06g031070 Solanum pennellii HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
Thecc.09G293300 Theobroma cacao HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
TWI79G0614 Tripterygium wilfordii HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
GSVIVG01031413001 Vitis vinifera HOM05D000929 ORTHO05D004137 1.2e-11 72.0 39 87.2
Duzib168G0512 Durio zibethinus HOM05D000929 ORTHO05D004137 1.6e-11 71.6 39 84.6
Nitab4.5_0004926g0020 Nicotiana tabacum HOM05D000929 ORTHO05D004137 1.6e-11 71.6 39 89.7
SalBow6G6633 Salvia bowleyana HOM05D000929 ORTHO05D004137 1.6e-11 71.6 39 89.7
Sed0000238 Sechium edule HOM05D000929 ORTHO05D004137 1.6e-11 71.6 39 84.6
Aqoxy2G01493 Aquilegia oxysepala HOM05D000929 ORTHO05D004137 2.1e-11 71.2 39 87.2
CSS0041991 Camellia sinensis var. sinensis HOM05D000929 ORTHO05D004137 2.1e-11 71.2 39 87.2
AUR62023959 Chenopodium quinoa HOM05D000929 ORTHO05D004137 2.1e-11 71.2 40 82.5
AUR62031755 Chenopodium quinoa HOM05D000929 ORTHO05D004137 2.1e-11 71.2 40 82.5
Dinv29411 Davidia involucrata HOM05D000929 ORTHO05D004137 2.1e-11 71.2 39 89.7
Lj3g0021930 Lotus japonicus HOM05D000929 ORTHO05D004137 2.1e-11 71.2 39 87.2
Nitab4.5_0003470g0070 Nicotiana tabacum HOM05D000929 ORTHO05D004137 2.1e-11 71.2 39 87.2
PSO339G3653 Papaver somniferum HOM05D000929 ORTHO05D004137 2.1e-11 71.2 39 87.2
PSO384G2211 Papaver somniferum HOM05D000929 ORTHO05D004137 2.1e-11 71.2 39 87.2
vmacro03226 Vaccinium macrocarpon HOM05D000929 ORTHO05D004137 2.1e-11 71.2 39 87.2
vmacro23023 Vaccinium macrocarpon HOM05D000929 ORTHO05D004137 2.1e-11 71.2 39 87.2
Atru.chr3.3402 Acer truncatum HOM05D000929 ORTHO05D004137 2.7e-11 70.9 39 84.6
FvH4_3g30090 Fragaria vesca HOM05D000929 ORTHO05D004137 2.7e-11 70.9 39 84.6
FAN11G0593 Fragaria x ananassa HOM05D000929 ORTHO05D004137 2.7e-11 70.9 39 84.6
FAN16G3173 Fragaria x ananassa HOM05D000929 ORTHO05D004137 2.7e-11 70.9 39 84.6
FAN21G3154 Fragaria x ananassa HOM05D000929 ORTHO05D004137 2.7e-11 70.9 39 84.6
FAN25G1715 Fragaria x ananassa HOM05D000929 ORTHO05D004137 2.7e-11 70.9 39 84.6
HanXRQChr14g0451931 Helianthus annuus HOM05D000929 ORTHO05D004137 2.7e-11 70.9 39 87.2
Lsat_1_v5_gn_2_96621 Lactuca sativa HOM05D000929 ORTHO05D004137 2.7e-11 70.9 39 87.2
Sed0008575 Sechium edule HOM05D000929 ORTHO05D004137 2.7e-11 70.9 39 87.2
Sopen11g026490 Solanum pennellii HOM05D000929 ORTHO05D004137 2.7e-11 70.9 39 87.2
THA.LOC104799529 Tarenaya hassleriana HOM05D000929 ORTHO05D004137 2.7e-11 70.9 40 87.5
TWI31G0368 Tripterygium wilfordii HOM05D000929 ORTHO05D004137 2.7e-11 70.9 39 84.6
CSS0004620 Camellia sinensis var. sinensis HOM05D000929 ORTHO05D004137 3.5e-11 70.5 39 87.2
ECA233G5521 Erigeron canadensis HOM05D000929 ORTHO05D004137 3.5e-11 70.5 39 84.6
HanXRQChr13g0396891 Helianthus annuus HOM05D000929 ORTHO05D004137 3.5e-11 70.5 39 84.6
Lsat_1_v5_gn_6_42741 Lactuca sativa HOM05D000929 ORTHO05D004137 3.5e-11 70.5 39 84.6
Nn2g13966 Nelumbo nucifera HOM05D000929 ORTHO05D004137 3.5e-11 70.5 39 87.2
Os03g0112101 Oryza sativa ssp. japonica HOM05D000929 ORTHO05D004137 3.5e-11 70.5 39 87.2
Sabra04G0128300 Salix brachista HOM05D000929 ORTHO05D004137 3.5e-11 70.5 39 87.2
HPP92_028038 Vanilla planifolia HOM05D000929 ORTHO05D004137 3.5e-11 70.5 39 87.2
Zm00001eb000860 Zea mays HOM05D000929 ORTHO05D004137 3.5e-11 70.5 39 87.2
Aa31LG4G14280 Aethionema arabicum HOM05D000929 ORTHO05D004137 4.6e-11 70.1 40 87.5
arahy.Tifrunner.gnm1.ann1.JFAW9R Arachis hypogaea HOM05D000929 ORTHO05D004137 4.6e-11 70.1 39 84.6
arahy.Tifrunner.gnm1.ann1.SC897I Arachis hypogaea HOM05D000929 ORTHO05D004137 4.6e-11 70.1 39 84.6
A10p18250 Brassica napus HOM05D000929 ORTHO05D004137 4.6e-11 70.1 40 87.5
C09p53880 Brassica napus HOM05D000929 ORTHO05D004137 4.6e-11 70.1 40 87.5
BolC9t58261H Brassica oleracea HOM05D000929 ORTHO05D004137 4.6e-11 70.1 40 87.5
BraA10t43900Z Brassica rapa HOM05D000929 ORTHO05D004137 4.6e-11 70.1 40 87.5
Carub.0006s2048 Capsella rubella HOM05D000929 ORTHO05D004137 4.6e-11 70.1 40 87.5
Carub.0006s2049 Capsella rubella HOM05D000929 ORTHO05D004137 4.6e-11 70.1 40 87.5
Ciclev10027737m.g Citrus clementina HOM05D000929 ORTHO05D004137 4.6e-11 70.1 39 87.2
Thhalv10012556m.g Eutrema salsugineum HOM05D000929 ORTHO05D004137 4.6e-11 70.1 40 87.5
Lalb_Chr24g0395091 Lupinus albus HOM05D000929 ORTHO05D004137 4.6e-11 70.1 39 87.2
Potri.009G150300 Populus trichocarpa HOM05D000929 ORTHO05D004137 4.6e-11 70.1 39 87.2
SHI06142 Sapria himalayana HOM05D000929 ORTHO05D004137 4.6e-11 70.1 39 87.2
Actinidia03683 Actinidia chinensis HOM05D000929 ORTHO05D004137 6.0e-11 69.7 39 84.6
Actinidia24174 Actinidia chinensis HOM05D000929 ORTHO05D004137 6.0e-11 69.7 39 84.6
ATR0820G043 Amborella trichopoda HOM05D000929 ORTHO05D004137 6.0e-11 69.7 39 84.6
AT5G22770 Arabidopsis thaliana HOM05D000929 ORTHO05D004137 6.0e-11 69.7 40 85.0
AT5G22780 Arabidopsis thaliana HOM05D000929 ORTHO05D004137 6.0e-11 69.7 40 85.0
CARHR190820 Cardamine hirsuta HOM05D000929 ORTHO05D004137 6.0e-11 69.7 40 85.0
DCAR_018747 Daucus carota HOM05D000929 ORTHO05D004137 6.0e-11 69.7 40 85.0
Gohir.A08G003300 Gossypium hirsutum HOM05D000929 ORTHO05D004137 6.0e-11 69.7 39 84.6
Gohir.D08G013700 Gossypium hirsutum HOM05D000929 ORTHO05D004137 6.0e-11 69.7 39 84.6
Manes.04G010400 Manihot esculenta HOM05D000929 ORTHO05D004137 6.0e-11 69.7 39 84.6
Manes.11G155700 Manihot esculenta HOM05D000929 ORTHO05D004137 6.0e-11 69.7 39 84.6
DCAR_015485 Daucus carota HOM05D000929 ORTHO05D004137 7.9e-11 69.3 39 87.2
MD11G1155000 Malus domestica HOM05D000929 ORTHO05D004137 7.9e-11 69.3 39 82.1
THA.LOC104810893 Tarenaya hassleriana HOM05D000929 ORTHO05D004137 7.9e-11 69.3 40 85.0
THA.LOC104814807 Tarenaya hassleriana HOM05D000929 ORTHO05D004137 7.9e-11 69.3 40 85.0
AL6G33770 Arabidopsis lyrata HOM05D000929 ORTHO05D004137 1.0e-10 68.9 40 85.0
COL.COLO4_19274 Corchorus olitorius HOM05D000929 ORTHO05D004137 1.0e-10 68.9 39 84.6
AagrBONN_evm.TU.Sc2ySwM_344.3846 Anthoceros agrestis HOM05D000929 ORTHO05D004137 1.3e-10 68.6 39 82.1
AL6G33800 Arabidopsis lyrata HOM05D000929 ORTHO05D004137 1.3e-10 68.6 40 82.5
Gorai.004G008000 Gossypium raimondii HOM05D000929 ORTHO05D004137 1.3e-10 68.6 39 82.1
Mapoly0072s0011 Marchantia polymorpha HOM05D000929 ORTHO05D004137 1.3e-10 68.6 39 82.1
Sc21g0004640 Simmondsia chinensis HOM05D000929 ORTHO05D004137 1.8e-10 68.2 39 79.5
TAR633G0080 Trochodendron aralioides HOM05D000929 ORTHO05D004137 1.8e-10 68.2 39 84.6
Ah.01g016700 Amaranthus hybridus HOM05D000929 ORTHO05D004137 2.3e-10 67.8 39 79.5
EL10Ac9g21056 Beta vulgaris HOM05D000929 ORTHO05D004137 2.3e-10 67.8 39 82.1
Aa31LG1G12920 Aethionema arabicum HOM05D000929 ORTHO05D004137 3.0e-10 67.4 39 84.6
BcaC09g49654 Brassica carinata HOM05D000929 ORTHO05D004137 3.0e-10 67.4 39 84.6
A01p26810 Brassica napus HOM05D000929 ORTHO05D004137 3.0e-10 67.4 39 84.6
C01p34170 Brassica napus HOM05D000929 ORTHO05D004137 3.0e-10 67.4 39 84.6
BolC1t03387H Brassica oleracea HOM05D000929 ORTHO05D004137 3.0e-10 67.4 39 84.6
BraA01t02610Z Brassica rapa HOM05D000929 ORTHO05D004137 3.0e-10 67.4 39 84.6
CBR_g29503 Chara braunii HOM05D000929 ORTHO05D004137 3.0e-10 67.4 39 82.1
Gohir.A09G092000 Gossypium hirsutum HOM05D000929 ORTHO05D004137 3.0e-10 67.4 39 79.5
Gohir.D09G091900 Gossypium hirsutum HOM05D000929 ORTHO05D004137 3.0e-10 67.4 39 79.5
Gorai.006G108500 Gossypium raimondii HOM05D000929 ORTHO05D004137 3.0e-10 67.4 39 79.5
Pp3c17_6470 Physcomitrium patens HOM05D000929 ORTHO05D004137 3.0e-10 67.4 39 79.5
Pp3c1_29560 Physcomitrium patens HOM05D000929 ORTHO05D004137 3.0e-10 67.4 39 79.5
Hund00800 Selenicereus undatus HOM05D000929 ORTHO05D004137 3.0e-10 67.4 39 82.1
SEGI_17793 Sequoiadendron giganteum HOM05D000929 ORTHO05D004137 3.0e-10 67.4 39 79.5
unitig_27.g25115 Utricularia gibba HOM05D000929 ORTHO05D004137 3.0e-10 67.4 39 84.6
TAR636G3579 Trochodendron aralioides HOM05D000929 ORTHO05D004137 5.1e-10 66.6 39 79.5
CARHR151250 Cardamine hirsuta HOM05D000929 ORTHO05D004137 2.5e-09 64.3 39 82.1
SMO353G0315 Selaginella moellendorffii HOM05D000929 ORTHO05D004137 2.5e-09 64.3 39 76.9
Pp3c17_2250 Physcomitrium patens HOM05D000929 ORTHO05D004137 3.3e-09 63.9 39 76.9
Peaxi162Scf00789g00218 Petunia axillaris HOM05D000929 ORTHO05D004137 1.6e-08 61.6 39 76.9


User provided reference genes

Program Settings