Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 4.0e-193 677.9 351 100.0
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 2.1e-189 665.6 351 98.0
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.0e-180 636.7 350 94.0
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 3.7e-178 628.2 348 93.1
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 5.5e-174 614.4 346 91.3
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.7e-170 602.8 346 88.4
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 5.3e-169 597.8 346 88.2
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 1.5e-168 596.3 340 88.2
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 7.7e-168 594.0 351 87.5
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 3.2e-166 588.6 351 86.9
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 2.7e-165 585.5 352 85.5
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 3.6e-165 585.1 359 85.5
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.1e-163 580.1 347 85.0
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 4.4e-163 578.2 324 90.1
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 9.7e-163 577.0 325 90.5
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.8e-161 572.8 342 86.5
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 2.4e-161 572.4 340 85.9
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 3.1e-161 572.0 333 86.5
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.2e-160 570.1 347 83.6
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.6e-160 569.7 359 83.0
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 2.6e-160 568.9 324 88.3
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 7.7e-160 567.4 324 88.3
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 1.7e-159 566.2 324 88.0
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 5.0e-159 564.7 323 86.7
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 8.5e-159 563.9 338 84.6
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 1.5e-158 563.1 323 87.9
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 3.2e-158 562.0 344 82.8
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 4.2e-158 561.6 319 89.3
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 4.2e-158 561.6 340 85.0
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 4.2e-158 561.6 342 84.2
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 7.2e-158 560.8 351 82.3
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 9.4e-158 560.5 323 87.0
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 1.2e-157 560.1 327 87.5
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 3.6e-157 558.5 344 83.7
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 6.1e-157 557.8 323 86.1
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 1.4e-156 556.6 347 84.1
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.4e-156 556.6 318 86.8
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 1.8e-156 556.2 322 87.0
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.8e-156 556.2 323 87.6
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 2.3e-156 555.8 341 83.9
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 5.2e-156 554.7 368 79.6
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 5.2e-156 554.7 323 87.0
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 5.2e-156 554.7 349 81.7
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.2e-155 553.5 318 86.2
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.2e-155 553.5 341 82.7
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.5e-155 553.1 318 86.2
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.6e-155 552.4 324 85.5
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.6e-155 552.4 324 85.5
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 9.7e-155 550.4 344 82.6
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 1.3e-154 550.1 324 86.1
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.7e-154 549.7 336 83.0
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 2.2e-154 549.3 344 81.7
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 3.7e-154 548.5 346 81.2
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 8.3e-154 547.4 348 81.9
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 8.3e-154 547.4 333 85.0
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 8.3e-154 547.4 341 81.8
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 1.1e-153 547.0 326 85.0
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.4e-153 546.6 347 82.4
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 1.4e-153 546.6 326 84.4
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 2.4e-153 545.8 328 84.1
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 3.1e-153 545.4 319 85.9
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 3.1e-153 545.4 425 69.6
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 3.1e-153 545.4 326 84.0
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 3.1e-153 545.4 339 82.3
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 4.1e-153 545.0 340 81.2
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 4.1e-153 545.0 326 84.0
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 7.0e-153 544.3 326 83.7
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 1.6e-152 543.1 323 84.8
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 2.7e-152 542.3 359 78.8
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 1.0e-151 540.4 323 84.2
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 1.7e-151 539.7 326 83.7
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.7e-151 539.7 347 81.3
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 2.2e-151 539.3 353 80.2
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 2.2e-151 539.3 324 83.6
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 5.0e-151 538.1 339 79.9
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.0e-151 538.1 347 80.4
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.0e-151 538.1 339 79.9
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 6.5e-151 537.7 354 77.7
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 8.5e-151 537.3 323 84.8
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 8.5e-151 537.3 344 80.2
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 1.1e-150 537.0 354 77.7
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 1.9e-150 536.2 324 83.6
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.5e-150 535.8 323 83.0
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.5e-150 535.8 318 84.9
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 4.2e-150 535.0 338 80.8
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 5.5e-150 534.6 335 82.1
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 7.2e-150 534.3 327 82.9
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 7.2e-150 534.3 338 80.5
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 7.2e-150 534.3 327 82.3
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 7.2e-150 534.3 336 80.1
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 7.2e-150 534.3 346 78.9
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 9.4e-150 533.9 354 77.7
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 9.4e-150 533.9 354 77.7
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 9.4e-150 533.9 323 83.9
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 9.4e-150 533.9 323 83.6
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 1.2e-149 533.5 323 83.3
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 1.2e-149 533.5 354 78.0
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 2.1e-149 532.7 327 82.6
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 2.1e-149 532.7 342 79.8
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 2.7e-149 532.3 354 77.4
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 2.7e-149 532.3 391 72.1
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 3.6e-149 531.9 359 78.6
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 4.7e-149 531.6 324 84.0
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 1.0e-148 530.4 338 80.5
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 1.0e-148 530.4 320 85.0
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 1.4e-148 530.0 338 80.2
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.4e-148 530.0 346 79.5
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 2.3e-148 529.3 415 70.1
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 3.0e-148 528.9 354 77.4
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 3.0e-148 528.9 327 82.0
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 3.0e-148 528.9 354 77.4
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 5.2e-148 528.1 354 77.1
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 6.8e-148 527.7 354 77.4
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 8.8e-148 527.3 344 78.8
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 2.0e-147 526.2 318 85.2
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 2.6e-147 525.8 327 81.7
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 2.6e-147 525.8 327 81.7
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 7.5e-147 524.2 343 77.8
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 9.8e-147 523.9 331 81.3
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 1.7e-146 523.1 323 81.1
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.2e-146 522.7 339 78.8
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.2e-146 522.7 339 78.8
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 6.3e-146 521.2 348 76.7
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 1.4e-145 520.0 323 80.8
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.1e-145 518.8 300 85.3
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 4.1e-145 518.5 323 81.7
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.4e-145 518.1 353 76.5
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 3.3e-142 508.8 345 76.8
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 7.2e-142 507.7 323 80.2
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 2.3e-140 502.7 284 88.4
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 1.2e-139 500.4 325 79.1
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.5e-139 500.0 284 88.0
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.6e-139 499.2 324 78.1
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 1.8e-137 493.0 326 76.1
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 2.7e-136 489.2 338 75.7
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 2.7e-136 489.2 324 75.3
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 7.8e-136 487.6 313 78.3
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 6.6e-135 484.6 313 78.6
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 8.6e-135 484.2 342 73.4
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 1.5e-134 483.4 290 84.1
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 1.6e-133 479.9 338 74.6
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 4.0e-132 475.3 335 72.5
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 1.5e-131 473.4 338 71.3
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 1.4e-129 466.8 299 77.3
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 1.9e-129 466.5 339 70.8
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 5.4e-129 464.9 303 80.5
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 5.0e-127 458.4 299 76.3
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 2.4e-113 412.9 297 70.7
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 2.1e-109 399.8 315 64.4
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 5.2e-108 395.2 250 81.2
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 7.6e-107 391.3 233 86.7
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 1.1e-105 387.5 229 86.5
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 1.1e-97 360.9 289 64.0
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 3.1e-92 342.8 236 75.0
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 1.1e-89 334.3 291 65.3
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 5.8e-75 285.4 199 77.9
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 2.3e-71 273.5 161 87.0
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 5.1e-71 272.3 308 51.6
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 4.1e-68 262.7 327 50.8
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 1.5e-51 207.6 112 89.3
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 2.1e-48 197.2 113 87.6
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 1.5e-41 174.5 194 55.7
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 1.5e-41 174.5 194 55.7
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 1.9e-41 174.1 176 59.1
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 2.2e-34 150.6 104 71.2
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 2.9e-34 150.2 102 73.5
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 2.9e-34 150.2 102 73.5
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 1.9e-33 147.5 102 72.5
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 2.5e-33 147.1 100 72.0
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 4.7e-32 142.9 286 34.3
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 8.0e-32 142.1 106 67.9
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 2.6e-30 137.1 107 63.6
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 3.7e-29 133.3 106 63.2
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 1.7e-18 97.8 62 75.8
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 1.7e-18 97.8 67 79.1
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 4.3e-17 93.2 61 82.0
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 1.2e-16 91.7 49 91.8
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 1.9e-09 67.8 38 78.9
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 2.1e-08 64.3 38 76.3


User provided reference genes

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