Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 2.6e-58 228.4 107 100.0
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 2.2e-41 172.2 102 85.3
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 4.1e-40 167.9 98 84.7
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 1.6e-39 166.0 102 82.4
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 2.1e-39 165.6 98 83.7
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 2.1e-39 165.6 98 82.7
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 1.0e-38 163.3 102 79.4
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 1.0e-38 163.3 102 79.4
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 1.0e-38 163.3 98 80.6
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 1.3e-38 162.9 102 78.4
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 1.3e-38 162.9 102 79.4
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 1.3e-38 162.9 102 81.4
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 1.3e-38 162.9 98 81.6
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 1.3e-38 162.9 102 81.4
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 2.3e-38 162.2 102 78.4
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 3.0e-38 161.8 97 82.5
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 3.0e-38 161.8 102 79.4
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 3.0e-38 161.8 102 79.4
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 3.9e-38 161.4 102 78.4
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 5.1e-38 161.0 104 76.9
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 1.1e-37 159.8 102 77.5
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 1.5e-37 159.5 98 80.6
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 1.5e-37 159.5 98 80.6
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 2.5e-37 158.7 98 79.6
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 3.3e-37 158.3 98 79.6
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 4.3e-37 157.9 110 73.6
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 4.3e-37 157.9 102 77.5
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 7.3e-37 157.1 102 77.5
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 2.1e-36 155.6 98 77.6
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 2.1e-36 155.6 98 77.6
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 2.1e-36 155.6 132 65.9
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 2.8e-36 155.2 102 74.5
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 3.6e-36 154.8 98 75.5
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 4.7e-36 154.5 102 74.5
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 6.2e-36 154.1 98 76.5
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 6.2e-36 154.1 97 79.4
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 8.1e-36 153.7 102 73.5
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 8.1e-36 153.7 98 75.5
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 1.1e-35 153.3 102 74.5
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 1.4e-35 152.9 102 75.5
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 1.4e-35 152.9 102 75.5
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 1.4e-35 152.9 102 73.5
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 1.8e-35 152.5 102 74.5
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 2.4e-35 152.1 102 74.5
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 2.4e-35 152.1 102 71.6
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 3.1e-35 151.8 98 76.5
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 3.1e-35 151.8 98 74.5
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 4.0e-35 151.4 102 74.5
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 5.2e-35 151.0 102 74.5
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 6.9e-35 150.6 98 74.5
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 6.9e-35 150.6 102 70.6
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 6.9e-35 150.6 102 70.6
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 1.2e-34 149.8 102 74.5
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 1.2e-34 149.8 102 73.5
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 1.5e-34 149.4 98 72.4
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 2.6e-34 148.7 102 73.5
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 2.6e-34 148.7 102 71.6
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 3.4e-34 148.3 98 74.5
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 4.4e-34 147.9 98 71.4
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 7.6e-34 147.1 98 71.4
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 9.9e-34 146.7 102 72.5
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 9.9e-34 146.7 102 70.6
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 9.9e-34 146.7 102 70.6
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 9.9e-34 146.7 98 72.4
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 1.3e-33 146.4 102 71.6
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 1.3e-33 146.4 102 71.6
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 1.3e-33 146.4 102 71.6
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 1.7e-33 146.0 102 71.6
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 1.7e-33 146.0 102 71.6
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 2.2e-33 145.6 80 88.8
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 2.9e-33 145.2 102 70.6
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 2.9e-33 145.2 102 70.6
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 2.9e-33 145.2 96 74.0
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 2.9e-33 145.2 102 71.6
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 3.8e-33 144.8 102 71.6
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 4.9e-33 144.4 102 71.6
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 6.4e-33 144.1 102 69.6
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 8.4e-33 143.7 102 70.6
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 8.4e-33 143.7 102 70.6
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 8.4e-33 143.7 102 70.6
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 8.4e-33 143.7 102 70.6
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 8.4e-33 143.7 102 70.6
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 3.2e-32 141.7 97 72.2
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 4.2e-32 141.4 148 54.1
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 2.7e-31 138.7 108 66.7
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.7e-31 138.7 98 67.3
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 4.6e-31 137.9 80 82.5
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 1.0e-30 136.7 93 73.1
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 3.0e-30 135.2 75 85.3
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 3.9e-30 134.8 93 72.0
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 6.6e-30 134.0 87 74.7
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 6.6e-30 134.0 98 64.3
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 6.6e-30 134.0 78 79.5
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 1.9e-29 132.5 76 81.6
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 2.5e-29 132.1 80 77.5
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 5.6e-29 131.0 75 84.0
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 1.3e-28 129.8 76 77.6
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 1.3e-28 129.8 104 65.4
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 1.6e-28 129.4 81 76.5
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 2.1e-28 129.0 98 65.3
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 2.1e-28 129.0 80 77.5
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 2.1e-28 129.0 80 76.2
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 2.8e-28 128.6 97 64.9
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 3.6e-28 128.3 83 71.1
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 6.2e-28 127.5 102 63.7
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 2.4e-27 125.6 79 74.7
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 4.0e-27 124.8 80 73.8
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 5.3e-27 124.4 76 78.9
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 2.0e-26 122.5 92 65.2
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 7.6e-26 120.6 87 66.7
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 4.9e-25 117.9 94 56.4
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 1.4e-24 116.3 104 54.8
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 1.5e-21 106.3 94 53.2
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 7.4e-21 104.0 84 63.1
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 5.3e-19 97.8 151 41.1
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.7e-17 92.8 70 62.9
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 3.8e-17 91.7 99 50.5
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 2.1e-15 85.9 101 49.5
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 2.1e-15 85.9 70 61.4
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 1.3e-14 83.2 54 75.9
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 3.0e-14 82.0 80 48.8
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 3.9e-14 81.6 50 78.0
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 6.7e-14 80.9 80 48.8
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 1.6e-12 76.3 52 71.2
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.6e-12 76.3 80 45.0
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 2.8e-12 75.5 48 72.9
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.8e-12 75.5 76 44.7
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 2.8e-12 75.5 76 44.7
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 6.2e-12 74.3 80 45.0
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 1.8e-11 72.8 43 79.1
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.8e-11 72.8 80 45.0
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 6.9e-11 70.9 52 65.4
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.6e-10 68.9 64 46.9
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 7.6e-10 67.4 64 51.6
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.3e-09 66.6 71 47.9
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 1.3e-09 66.6 60 48.3
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 2.2e-09 65.9 41 80.5


User provided reference genes

Program Settings