Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 6.9e-193 677.2 351 100.0
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 3.5e-189 664.8 351 98.0
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 4.6e-181 637.9 350 93.7
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 5.3e-177 624.4 348 92.2
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 1.2e-173 613.2 346 91.6
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 2.4e-169 599.0 346 88.2
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 5.3e-169 597.8 346 88.4
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 3.8e-167 591.7 340 87.9
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 1.9e-166 589.3 351 87.2
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 2.5e-166 589.0 359 85.8
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 8.0e-165 583.9 351 86.6
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 1.0e-164 583.6 352 85.8
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 1.3e-162 576.6 325 90.5
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 1.4e-161 573.2 324 89.2
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.8e-161 572.8 347 83.9
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 7.0e-161 570.9 337 86.6
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 1.2e-160 570.1 333 86.8
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 2.6e-160 568.9 359 83.0
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 4.5e-160 568.2 342 85.7
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.0e-159 567.0 324 88.0
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 1.3e-159 566.6 324 88.0
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 2.9e-159 565.5 324 87.7
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 8.5e-159 563.9 342 84.2
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 1.1e-158 563.5 323 86.7
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 1.5e-158 563.1 338 84.0
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.5e-158 563.1 347 82.4
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 1.5e-158 563.1 339 84.7
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 4.2e-158 561.6 323 87.0
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 5.5e-158 561.2 322 87.6
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 7.2e-158 560.8 340 84.7
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 9.4e-158 560.5 318 87.1
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 1.6e-157 559.7 327 87.2
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 2.1e-157 559.3 323 87.6
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 8.0e-157 557.4 319 88.7
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 8.0e-157 557.4 338 83.4
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.8e-156 556.2 344 82.0
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 2.3e-156 555.8 323 86.7
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 2.3e-156 555.8 344 83.1
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 4.0e-156 555.1 323 87.0
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 8.8e-156 553.9 338 84.0
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.2e-155 553.5 318 86.2
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.2e-155 553.5 324 85.8
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.2e-155 553.5 324 85.8
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.5e-155 553.1 318 86.2
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 2.0e-155 552.7 324 86.7
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 2.6e-155 552.4 338 84.0
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 3.3e-155 552.0 344 82.6
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 5.7e-155 551.2 344 82.0
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 1.3e-154 550.1 323 86.7
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.3e-154 550.1 319 86.5
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 1.7e-154 549.7 348 82.2
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 1.7e-154 549.7 326 85.3
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 2.2e-154 549.3 322 84.5
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 2.2e-154 549.3 327 84.4
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 2.2e-154 549.3 328 84.5
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 2.2e-154 549.3 326 84.7
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 2.8e-154 548.9 327 85.0
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 4.8e-154 548.1 341 82.4
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 4.8e-154 548.1 326 84.4
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 4.8e-154 548.1 341 81.8
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 6.3e-154 547.7 326 84.4
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.1e-153 547.0 326 84.0
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 1.8e-153 546.2 346 80.6
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 2.4e-153 545.8 359 79.4
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 3.1e-153 545.4 326 84.0
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 3.1e-153 545.4 326 84.0
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 9.1e-153 543.9 347 81.8
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 9.1e-153 543.9 323 84.5
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 1.2e-152 543.5 333 84.4
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 2.0e-152 542.7 324 84.6
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 2.7e-152 542.3 353 80.2
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 4.5e-152 541.6 323 82.7
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.5e-152 541.6 323 82.7
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 7.7e-152 540.8 344 80.8
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 1.0e-151 540.4 354 78.0
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 1.3e-151 540.0 323 83.6
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 1.7e-151 539.7 354 78.0
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.7e-151 539.7 334 82.6
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 1.7e-151 539.7 425 68.9
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 5.0e-151 538.1 337 82.5
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.0e-151 538.1 323 83.6
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.0e-151 538.1 347 81.0
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 8.5e-151 537.3 324 83.6
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 1.5e-150 536.6 354 78.0
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 1.5e-150 536.6 354 78.0
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 1.9e-150 536.2 353 78.2
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 1.9e-150 536.2 356 77.8
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 1.9e-150 536.2 354 77.7
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 1.9e-150 536.2 354 78.2
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 1.9e-150 536.2 327 83.2
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 2.5e-150 535.8 335 81.5
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.5e-150 535.8 318 84.6
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 4.2e-150 535.0 354 77.7
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 4.2e-150 535.0 326 81.9
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 4.2e-150 535.0 324 84.3
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 5.5e-150 534.6 323 83.0
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 5.5e-150 534.6 319 85.0
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 7.2e-150 534.3 327 82.9
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 7.2e-150 534.3 346 78.9
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 9.4e-150 533.9 320 82.5
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 3.6e-149 531.9 354 77.7
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 3.6e-149 531.9 354 78.0
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 3.6e-149 531.9 354 77.4
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 3.6e-149 531.9 356 77.5
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 4.7e-149 531.6 354 77.7
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 4.7e-149 531.6 354 77.7
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 6.1e-149 531.2 320 85.3
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 8.0e-149 530.8 354 77.4
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 1.8e-148 529.6 335 81.8
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 2.3e-148 529.3 323 83.0
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 3.0e-148 528.9 359 78.6
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 8.8e-148 527.3 327 82.0
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 8.8e-148 527.3 327 82.0
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 8.8e-148 527.3 343 78.4
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 1.5e-147 526.6 391 71.1
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 4.4e-147 525.0 415 69.6
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 7.5e-147 524.2 348 77.3
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 9.8e-147 523.9 323 81.4
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 2.8e-146 522.3 318 84.6
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 4.8e-146 521.5 344 78.5
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.3e-146 521.2 323 80.8
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.3e-146 521.2 323 80.8
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 8.3e-146 520.8 323 81.1
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.4e-145 520.0 300 85.7
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 1.8e-145 519.6 331 81.0
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 4.1e-145 518.5 323 81.7
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.4e-145 518.1 353 76.2
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 6.6e-143 511.1 345 77.4
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.5e-142 509.2 347 77.5
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.8e-141 505.8 284 89.1
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 1.0e-140 503.8 325 79.4
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 1.8e-140 503.1 284 88.4
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 6.8e-140 501.1 324 78.7
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 7.0e-137 491.1 313 78.6
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 1.6e-136 490.0 354 72.9
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 4.5e-136 488.4 344 73.5
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 5.9e-136 488.0 313 78.9
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 7.8e-136 487.6 326 75.5
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 6.6e-135 484.6 290 84.1
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 1.1e-134 483.8 324 74.7
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 5.6e-134 481.5 356 71.9
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 3.6e-133 478.8 329 73.9
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 2.3e-132 476.1 335 72.5
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 3.7e-130 468.8 322 73.0
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 2.0e-128 463.0 299 76.9
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.7e-128 462.6 279 84.9
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 5.6e-126 454.9 299 75.6
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 2.4e-113 412.9 297 70.4
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 1.5e-110 403.7 315 64.8
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 1.2e-109 400.6 250 82.0
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 2.6e-107 392.9 233 86.3
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 7.6e-107 391.3 229 87.3
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 1.7e-98 363.6 289 64.4
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 1.4e-92 344.0 236 75.0
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 2.9e-90 336.3 291 66.0
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 9.0e-76 288.1 199 78.4
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 4.6e-72 275.8 161 86.3
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 1.3e-71 274.2 308 51.6
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 7.7e-67 258.5 327 50.2
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 1.3e-50 204.5 112 88.4
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 1.2e-48 198.0 113 88.5
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 1.7e-42 177.6 194 56.2
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 1.7e-42 177.6 194 56.2
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 2.2e-42 177.2 176 59.7
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 6.5e-34 149.1 104 71.2
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 4.2e-33 146.4 102 72.5
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 4.2e-33 146.4 102 72.5
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 2.7e-32 143.7 102 71.6
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 3.6e-32 143.3 100 71.0
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 6.1e-32 142.5 286 33.9
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 2.3e-31 140.6 106 67.9
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 7.5e-30 135.6 107 63.6
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 1.1e-28 131.7 106 63.2
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 3.5e-19 100.1 64 75.0
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 1.7e-18 97.8 67 79.1
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 1.2e-16 91.7 49 91.8
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 1.2e-16 91.7 61 80.3
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 2.1e-08 64.3 38 76.3
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 2.3e-07 60.8 38 73.7


User provided reference genes

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