Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 8.6e-60 233.4 115 100.0
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 1.8e-57 225.7 112 98.2
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 5.2e-57 224.2 112 98.2
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 2.6e-56 221.9 112 96.4
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 2.6e-56 221.9 112 96.4
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 9.9e-56 219.9 112 94.6
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 1.1e-54 216.5 112 94.6
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 1.9e-54 215.7 112 92.0
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 4.2e-54 214.5 112 93.8
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 3.9e-52 208.0 112 89.3
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 8.7e-52 206.8 112 87.5
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 1.1e-51 206.5 112 88.4
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.5e-51 206.1 112 87.5
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.9e-51 205.7 112 86.6
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 1.9e-51 205.7 112 88.4
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 1.9e-51 205.7 112 87.5
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 2.5e-51 205.3 112 87.5
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 2.5e-51 205.3 112 87.5
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 2.5e-51 205.3 112 86.6
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 3.3e-51 204.9 112 85.7
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 5.6e-51 204.1 112 85.7
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 9.6e-51 203.4 112 89.3
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 1.3e-50 203.0 112 86.6
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 1.6e-50 202.6 112 84.8
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 2.1e-50 202.2 112 88.4
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 2.8e-50 201.8 112 84.8
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 2.8e-50 201.8 112 85.7
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 2.8e-50 201.8 112 83.9
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 4.8e-50 201.1 112 83.9
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 4.8e-50 201.1 112 87.5
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 4.8e-50 201.1 112 84.8
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 4.8e-50 201.1 112 85.7
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 4.8e-50 201.1 112 84.8
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 4.8e-50 201.1 112 84.8
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 4.8e-50 201.1 112 84.8
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 6.2e-50 200.7 112 85.7
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 6.2e-50 200.7 112 84.8
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 1.1e-49 199.9 112 84.8
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 1.1e-49 199.9 112 87.5
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 1.1e-49 199.9 112 83.9
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.1e-49 199.9 112 85.7
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.1e-49 199.9 112 83.9
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.1e-49 199.9 112 84.8
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 1.1e-49 199.9 112 84.8
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.4e-49 199.5 112 84.8
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 1.4e-49 199.5 112 82.1
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 1.4e-49 199.5 112 82.1
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 1.4e-49 199.5 112 83.0
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 1.4e-49 199.5 112 85.7
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 1.4e-49 199.5 113 84.1
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 1.4e-49 199.5 112 83.9
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 1.8e-49 199.1 112 82.1
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 1.8e-49 199.1 112 82.1
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 1.8e-49 199.1 112 82.1
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 1.8e-49 199.1 112 82.1
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 2.4e-49 198.7 112 83.0
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 3.1e-49 198.4 112 82.1
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 3.1e-49 198.4 112 85.7
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 3.1e-49 198.4 112 84.8
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 3.1e-49 198.4 112 84.8
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.1e-49 198.4 112 83.0
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 4.0e-49 198.0 112 81.2
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 4.0e-49 198.0 112 81.2
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 4.0e-49 198.0 112 82.1
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 4.0e-49 198.0 112 81.2
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 4.0e-49 198.0 112 82.1
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 4.0e-49 198.0 112 84.8
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.0e-49 198.0 112 83.0
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 4.0e-49 198.0 112 83.9
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.0e-49 198.0 112 84.8
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 5.3e-49 197.6 112 81.2
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 5.3e-49 197.6 112 81.2
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 5.3e-49 197.6 112 81.2
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 5.3e-49 197.6 112 83.9
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 6.9e-49 197.2 112 81.2
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.9e-49 197.2 112 83.0
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.9e-49 197.2 112 83.0
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.9e-49 197.2 112 83.0
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 6.9e-49 197.2 112 82.1
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 6.9e-49 197.2 112 83.9
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 9.0e-49 196.8 112 81.2
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 9.0e-49 196.8 112 82.1
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 1.2e-48 196.4 112 81.2
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 1.2e-48 196.4 112 82.1
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 1.2e-48 196.4 112 83.9
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.2e-48 196.4 112 82.1
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 1.2e-48 196.4 112 83.9
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 1.2e-48 196.4 113 83.2
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.6e-48 195.3 112 83.0
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 2.6e-48 195.3 112 83.0
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 3.4e-48 194.9 112 84.8
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 3.4e-48 194.9 112 82.1
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 4.4e-48 194.5 113 81.4
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.4e-48 194.5 112 83.0
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 5.8e-48 194.1 112 82.1
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 5.8e-48 194.1 112 83.9
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 7.6e-48 193.7 113 79.6
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 7.6e-48 193.7 112 83.0
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 7.6e-48 193.7 112 82.1
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 7.6e-48 193.7 112 83.9
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 9.9e-48 193.4 112 83.0
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 9.9e-48 193.4 112 82.1
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 1.3e-47 193.0 112 83.9
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 1.3e-47 193.0 112 83.0
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.3e-47 193.0 112 81.2
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 1.3e-47 193.0 113 79.6
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.7e-47 192.6 112 83.9
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.7e-47 192.6 112 83.9
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 2.2e-47 192.2 112 82.1
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 2.2e-47 192.2 112 81.2
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 2.2e-47 192.2 112 82.1
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 2.9e-47 191.8 112 80.4
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 2.9e-47 191.8 112 81.2
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.9e-47 191.8 112 81.2
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 3.8e-47 191.4 109 81.7
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 3.8e-47 191.4 112 81.2
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 4.9e-47 191.0 112 80.4
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.9e-47 191.0 112 81.2
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 4.9e-47 191.0 112 81.2
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 6.4e-47 190.7 113 78.8
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 8.4e-47 190.3 112 80.4
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.1e-46 189.9 112 80.4
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 1.1e-46 189.9 112 82.1
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 1.1e-46 189.9 112 78.6
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 1.1e-46 189.9 112 80.4
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.4e-46 189.5 112 79.5
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 1.9e-46 189.1 112 79.5
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 1.9e-46 189.1 112 79.5
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 2.4e-46 188.7 112 79.5
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.2e-45 186.4 112 76.8
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.2e-45 186.4 112 77.7
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 1.6e-45 186.0 112 76.8
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 2.1e-45 185.7 112 76.8
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 1.5e-43 179.5 113 75.2
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.9e-43 179.1 113 73.5
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 9.6e-43 176.8 112 69.6
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 1.6e-42 176.0 112 69.6
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 9.0e-41 170.2 112 69.6
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 9.9e-40 166.8 204 48.0
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 1.7e-39 166.0 96 81.2
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 2.2e-39 165.6 112 67.9
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 6.4e-39 164.1 112 71.4
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 1.1e-38 163.3 113 69.0
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 4.2e-38 161.4 111 70.3
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 2.1e-37 159.1 88 80.7
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 7.9e-37 157.1 111 69.4
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.3e-36 156.4 111 69.4
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 3.7e-34 148.3 113 66.4
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 4.8e-34 147.9 112 62.5
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 3.8e-31 138.3 114 58.8
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 3.8e-31 138.3 74 85.1
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 6.5e-31 137.5 84 81.0
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 8.4e-31 137.1 112 60.7
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 4.2e-30 134.8 76 85.5
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 8.2e-26 120.6 85 67.1
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 6.9e-25 117.5 83 68.7
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 6.9e-25 117.5 83 68.7
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 6.9e-25 117.5 83 68.7
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 6.9e-25 117.5 83 68.7
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 2.9e-23 112.1 87 63.2
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 3.2e-22 108.6 88 59.1
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 4.6e-21 104.8 87 58.6
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 3.3e-19 98.6 64 71.9
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 3.3e-11 72.0 98 41.8
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 1.1e-09 67.0 37 83.8
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 5.3e-09 64.7 34 91.2
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 3.8e-07 58.5 37 81.1
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 6.5e-07 57.8 74 40.5
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 2.5e-06 55.8 34 70.6


User provided reference genes

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