Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 2.2e-289 998.4 563 100.0
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 3.6e-236 821.6 520 85.4
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 1.5e-213 746.5 519 75.5
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 3.2e-208 728.8 519 75.0
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 1.0e-198 697.2 519 77.1
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 1.4e-192 676.8 523 68.8
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 6.1e-191 671.4 514 67.7
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 6.1e-191 671.4 514 67.7
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 9.7e-189 664.1 521 67.0
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 1.3e-172 610.5 514 62.8
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 4.5e-170 602.1 521 70.4
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 1.7e-169 600.1 520 71.2
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 3.8e-169 599.0 521 70.6
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 3.8e-169 599.0 515 64.9
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 5.0e-169 598.6 514 71.0
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 1.1e-168 597.4 514 70.8
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 1.5e-168 597.0 513 69.8
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 1.9e-168 596.7 519 63.8
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 3.2e-168 595.9 515 61.7
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 9.4e-168 594.3 541 68.4
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 2.7e-167 592.8 510 71.6
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 3.6e-167 592.4 510 71.0
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 2.3e-166 589.7 518 61.0
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 5.2e-166 588.6 510 70.4
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 8.8e-166 587.8 540 62.0
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 1.2e-165 587.4 510 70.0
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 2.6e-165 586.3 518 68.5
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 7.5e-165 584.7 519 64.2
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 9.8e-165 584.3 510 69.6
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 6.3e-164 581.6 540 61.9
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 4.1e-163 578.9 520 59.2
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 1.3e-161 573.9 519 59.2
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.7e-161 573.5 536 67.4
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 2.3e-161 573.2 520 58.5
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 8.6e-161 571.2 519 59.0
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 8.6e-161 571.2 519 59.0
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 2.5e-160 569.7 537 67.2
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 3.3e-160 569.3 519 61.3
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 3.3e-160 569.3 535 67.3
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 9.5e-160 567.8 516 58.7
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.2e-159 567.4 537 67.0
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 4.7e-159 565.5 520 57.9
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 8.0e-159 564.7 519 58.2
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.8e-158 563.5 536 66.8
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 6.8e-158 561.6 526 68.6
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 6.8e-158 561.6 526 68.6
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 2.2e-156 556.6 515 56.1
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 9.2e-155 551.2 514 66.5
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 4.5e-154 548.9 517 64.8
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 3.9e-153 545.8 521 59.3
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 6.6e-153 545.0 520 56.7
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 5.6e-152 542.0 537 64.6
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 1.6e-151 540.4 510 58.6
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.0e-150 537.7 525 57.1
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.8e-150 537.0 524 57.6
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 1.8e-150 537.0 521 55.3
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 7.5e-149 531.6 498 64.7
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 9.8e-149 531.2 522 63.2
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 1.4e-147 527.3 521 55.9
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 3.2e-147 526.2 516 57.0
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 7.0e-147 525.0 523 55.3
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 1.6e-146 523.9 525 54.3
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 2.0e-146 523.5 525 62.1
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 2.7e-146 523.1 524 56.7
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 3.9e-145 519.2 521 54.9
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 5.0e-145 518.8 519 54.5
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 2.5e-144 516.5 515 55.3
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 7.3e-144 515.0 522 54.4
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 8.0e-143 511.5 521 61.6
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 5.2e-142 508.8 521 61.4
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 2.0e-141 506.9 519 62.2
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 2.2e-140 503.4 520 53.7
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 2.9e-140 503.1 520 53.7
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 2.9e-140 503.1 521 62.4
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 6.4e-140 501.9 519 53.4
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 1.1e-139 501.1 523 52.8
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 7.1e-139 498.4 521 60.8
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 7.1e-139 498.4 473 55.6
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 1.6e-138 497.3 520 54.8
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 2.1e-138 496.9 521 60.5
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 6.0e-138 495.4 517 62.5
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 5.1e-137 492.3 517 53.4
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 4.3e-136 489.2 516 62.4
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 4.7e-135 485.7 517 53.0
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 1.5e-133 480.7 517 52.8
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 2.6e-133 479.9 524 51.9
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 7.6e-133 478.4 516 52.7
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 2.2e-132 476.9 521 60.1
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 2.9e-132 476.5 517 52.2
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 4.9e-132 475.7 522 51.5
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 8.3e-132 474.9 521 59.7
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 3.5e-130 469.5 515 59.4
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 1.9e-128 463.8 524 49.6
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 9.6e-128 461.5 521 58.2
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 1.8e-126 457.2 508 57.9
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 2.4e-126 456.8 524 48.9
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 5.8e-125 452.2 515 50.5
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 4.9e-124 449.1 522 47.1
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 3.5e-122 443.0 513 57.9
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 1.3e-121 441.0 516 50.4
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 5.1e-113 412.5 321 66.0
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 2.5e-112 410.2 514 47.7
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 4.9e-108 396.0 511 46.2
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 4.9e-108 396.0 526 45.6
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 1.8e-105 387.5 516 44.8
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 2.1e-98 364.0 520 53.5
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 5.7e-96 355.9 533 42.2
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 6.2e-95 352.4 531 41.4
Sc17g0005180 Simmondsia chinensis HOM05D005544 ORTHO05D007303 1.0e-89 335.1 379 62.5
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 6.5e-76 289.3 510 44.3
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 2.4e-70 270.8 521 43.0
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 9.1e-70 268.9 268 51.1
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 1.6e-66 258.1 511 37.6
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 9.7e-64 248.8 332 39.2
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 2.2e-63 247.7 400 40.8
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 6.8e-57 226.1 314 43.0
Cre03.g196850 Chlamydomonas reinhardtii HOM05D005544 ORTHO05D007303 7.5e-56 222.6 507 32.7
PRCOL_00005139 Prasinoderma coloniale HOM05D005544 ORTHO05D007303 2.1e-42 177.9 519 28.1
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 1.8e-41 174.9 430 29.8
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 3.2e-38 164.1 226 43.4
Hma1.2p1_3416F.1_g335940 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 6.2e-34 149.8 314 33.4
PGSC0003DMG400036093 Solanum tuberosum HOM05D005544 ORTHO05D007303 6.8e-33 146.4 96 68.8
Cfa022606 Carpinus fangiana HOM05D005544 ORTHO05D007303 8.3e-31 139.4 498 28.1
C04p71990 Brassica napus HOM05D002853 ORTHO05D003030 2.0e-29 134.8 128 54.7
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 7.3e-27 126.3 178 41.0
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 2.1e-26 124.8 222 40.5
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 3.5e-21 107.5 119 48.7
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 2.5e-19 101.3 142 43.0
Sc17g0005170 Simmondsia chinensis HOM05D005544 ORTHO05D007303 3.3e-19 100.9 91 61.5
BolC7t40575H Brassica oleracea HOM05D005544 ORTHO05D027614 3.7e-15 87.4 175 36.0
A07p00730 Brassica napus HOM05D005544 ORTHO05D027614 2.4e-14 84.7 181 34.3
CAN.G708.1 Capsicum annuum HOM05D005544 ORTHO05D027614 1.9e-11 75.1 69 58.0
SGA_v2.0_scaffold419G51287 Striga asiatica HOM05D005544 ORTHO05D007303 3.3e-11 74.3 87 49.4
CAN.G111.2 Capsicum annuum HOM05D000002 ORTHO05D000001 4.3e-11 73.9 52 61.5
Nn3g19125 Nelumbo nucifera HOM05D005544 ORTHO05D007303 4.3e-11 73.9 58 63.8
SGA_v2.0_scaffold175G39332 Striga asiatica HOM05D005544 ORTHO05D007303 1.6e-10 72.0 87 47.1
SGA_v2.0_scaffold45G17255 Striga asiatica HOM05D005544 ORTHO05D007303 1.8e-09 68.6 99 42.4
MBI04_g44160_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.1e-06 59.3 105 37.1
MSTRG.259 Avicennia marina HOM05D001260 ORTHO05D004134 5.4e-06 57.0 105 35.2
Oeu001521.1 Olea europaea HOM05D001260 ORTHO05D004134 7.1e-06 56.6 105 34.3


User provided reference genes

Program Settings