Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 8.5e-246 853.2 425 100.0
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 3.7e-241 837.8 425 98.1
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 7.2e-229 797.0 426 93.9
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 5.2e-227 790.8 425 91.3
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 4.9e-225 784.3 428 91.8
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 1.2e-223 779.6 428 90.9
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 5.9e-223 777.3 427 89.9
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 3.3e-221 771.5 425 90.1
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 1.2e-220 769.6 426 89.7
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 1.0e-219 766.5 429 88.1
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 2.0e-218 762.3 429 87.9
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 2.8e-212 741.9 426 86.9
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 6.8e-211 737.3 426 86.2
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 1.5e-210 736.1 425 85.4
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 1.5e-210 736.1 427 86.9
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 5.8e-210 734.2 427 86.2
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 9.8e-210 733.4 425 85.2
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 1.3e-209 733.0 425 85.4
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 1.7e-209 732.6 425 85.2
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 1.7e-209 732.6 428 86.0
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 4.9e-209 731.1 426 85.7
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 8.3e-209 730.3 428 85.5
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 4.1e-208 728.0 425 84.7
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 9.2e-208 726.9 428 85.5
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 1.2e-207 726.5 396 89.4
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 1.2e-207 726.5 396 89.4
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 1.6e-207 726.1 426 84.7
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 2.7e-207 725.3 425 84.7
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 7.8e-207 723.8 428 84.6
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 7.8e-207 723.8 426 84.5
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 1.0e-206 723.4 428 84.6
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 1.3e-206 723.0 396 89.1
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 1.7e-206 722.6 428 84.6
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 5.0e-206 721.1 427 83.8
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 5.0e-206 721.1 426 83.8
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 1.9e-205 719.2 396 89.1
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 2.5e-205 718.8 426 84.0
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 3.3e-205 718.4 436 83.7
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 4.3e-205 718.0 433 84.8
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 1.2e-204 716.5 425 83.8
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 1.6e-204 716.1 432 83.8
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 2.1e-204 715.7 432 83.8
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 2.8e-204 715.3 403 86.4
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 4.7e-204 714.5 430 83.0
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 6.2e-204 714.1 432 82.6
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 8.1e-204 713.8 425 82.6
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 8.1e-204 713.8 432 82.4
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 1.8e-203 712.6 432 83.3
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 4.0e-203 711.4 430 82.6
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 5.2e-203 711.1 396 88.1
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 8.9e-203 710.3 430 82.6
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 1.5e-202 709.5 407 84.8
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 3.4e-202 708.4 432 82.2
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 5.8e-202 707.6 432 81.7
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 1.7e-201 706.1 396 86.9
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 2.2e-201 705.7 398 85.9
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 4.9e-201 704.5 395 87.1
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 1.4e-200 703.0 429 82.1
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 1.4e-200 703.0 397 87.7
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 1.4e-200 703.0 430 82.3
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 1.9e-200 702.6 426 82.6
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 2.1e-199 699.1 396 86.4
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 2.1e-199 699.1 425 81.2
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 3.5e-199 698.4 427 81.3
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 3.5e-199 698.4 427 81.3
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 1.0e-198 696.8 379 89.2
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 1.3e-198 696.4 424 81.4
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 1.7e-198 696.0 406 83.7
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 1.7e-198 696.0 398 85.7
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 1.5e-197 693.0 425 81.4
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 1.9e-197 692.6 414 83.6
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 2.5e-197 692.2 396 85.9
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 7.3e-197 690.6 430 79.3
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 7.3e-197 690.6 397 85.1
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 6.2e-196 687.6 393 85.8
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 2.4e-195 685.6 368 91.3
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 8.9e-195 683.7 396 83.8
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 8.9e-195 683.7 408 82.4
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 1.2e-194 683.3 427 79.9
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 7.6e-194 680.6 421 79.1
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 1.3e-193 679.9 398 82.9
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 1.7e-193 679.5 374 90.1
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 2.2e-193 679.1 396 83.8
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 4.9e-193 677.9 432 77.8
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 8.4e-193 677.2 368 88.9
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 2.4e-192 675.6 396 84.1
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 2.4e-192 675.6 430 77.9
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 4.1e-192 674.9 398 82.4
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 9.2e-192 673.7 432 77.3
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 1.2e-191 673.3 396 83.1
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 2.1e-191 672.5 423 78.0
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 1.0e-190 670.2 444 75.9
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 1.3e-190 669.8 397 82.4
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 1.7e-190 669.5 433 77.4
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 6.6e-190 667.5 431 77.5
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 1.9e-189 666.0 397 84.1
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 3.3e-189 665.2 396 82.3
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 3.3e-189 665.2 430 77.4
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 1.2e-188 663.3 382 84.8
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 1.6e-188 662.9 396 82.1
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 2.8e-188 662.1 396 82.3
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 1.1e-187 660.2 378 85.4
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 3.1e-187 658.7 438 75.6
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 9.0e-187 657.1 396 81.6
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 1.5e-186 656.4 460 72.2
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 2.6e-186 655.6 433 77.8
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 5.4e-184 647.9 433 77.4
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 1.1e-181 640.2 368 85.1
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 1.5e-181 639.8 382 80.9
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 3.3e-181 638.6 376 84.6
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 6.9e-179 630.9 396 75.3
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 4.9e-177 624.8 382 79.6
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 2.7e-175 619.0 382 78.0
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 3.9e-174 615.1 379 77.3
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 5.8e-162 574.7 368 76.4
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 1.4e-160 570.1 378 71.2
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 7.1e-160 567.8 378 72.0
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 4.3e-157 558.5 305 89.2
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 2.4e-155 552.7 386 72.5
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 5.3e-155 551.6 381 72.7
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 4.2e-152 542.0 369 71.3
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 9.1e-147 524.2 378 65.9
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 3.9e-142 508.8 288 86.8
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 3.6e-127 459.1 407 60.2
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 8.0e-127 458.0 299 75.6
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 2.0e-114 416.8 267 79.8
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 3.5e-106 389.4 280 72.5
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 3.9e-73 279.6 360 43.3
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 1.2e-71 274.6 336 44.6
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 2.7e-66 256.9 151 84.8
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 4.5e-53 213.0 118 86.4
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 5.3e-46 189.5 113 78.8
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 1.7e-36 157.9 84 89.3
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 5.1e-33 146.4 125 65.6
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 8.2e-31 139.0 84 77.4
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 6.9e-30 136.0 84 75.0
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 4.4e-24 116.7 57 91.2
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 7.4e-24 115.9 79 73.4
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 2.4e-22 110.9 63 84.1
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 8.8e-17 92.4 57 82.5
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 4.8e-15 86.7 195 31.3
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 4.7e-10 70.1 40 75.0
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 6.8e-09 66.2 66 53.0
BolC3t17202H Brassica oleracea HOM05D000003 ORTHO05D001498 4.1e-06 57.0 40 70.0


User provided reference genes

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