Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 1.1e-154 550.1 300 100.0
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 1.7e-152 542.7 300 99.0
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 1.1e-143 513.5 302 93.7
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 6.2e-134 481.1 304 81.6
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 1.4e-133 479.9 307 82.4
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 1.8e-133 479.6 304 81.6
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 5.3e-133 478.0 304 82.2
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 2.0e-132 476.1 311 80.4
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 9.9e-132 473.8 302 85.1
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 3.8e-131 471.9 304 80.6
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 2.4e-130 469.2 307 81.1
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.4e-130 469.2 302 83.1
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 2.4e-130 469.2 302 83.1
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 3.2e-130 468.8 304 79.9
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 4.2e-130 468.4 307 82.7
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 5.4e-130 468.0 307 83.7
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 3.5e-129 465.3 301 81.4
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 3.5e-129 465.3 302 85.8
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 4.6e-129 464.9 304 83.2
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 4.6e-129 464.9 300 80.7
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 1.0e-128 463.8 306 83.0
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.7e-128 463.0 302 82.1
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 2.3e-128 462.6 302 85.8
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 3.0e-128 462.2 302 83.4
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 6.6e-128 461.1 299 80.6
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 6.6e-128 461.1 305 78.4
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 1.1e-127 460.3 304 83.6
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 2.5e-127 459.1 304 78.9
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 3.3e-127 458.8 300 81.3
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 4.3e-127 458.4 303 79.5
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 5.6e-127 458.0 300 81.3
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 7.3e-127 457.6 304 78.6
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 2.1e-126 456.1 302 77.8
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 2.8e-126 455.7 298 81.2
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 2.8e-126 455.7 300 81.0
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 3.6e-126 455.3 302 79.5
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 3.6e-126 455.3 298 80.9
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 4.8e-126 454.9 304 78.3
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 4.8e-126 454.9 304 78.3
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 4.8e-126 454.9 306 78.8
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 6.2e-126 454.5 306 81.4
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 3.1e-125 452.2 300 78.7
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 3.1e-125 452.2 300 81.7
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 5.3e-125 451.4 305 79.7
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 5.3e-125 451.4 305 79.7
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 6.9e-125 451.1 304 78.0
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 9.0e-125 450.7 304 77.6
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 9.0e-125 450.7 313 78.0
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 9.0e-125 450.7 313 78.0
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 9.0e-125 450.7 313 78.0
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 1.2e-124 450.3 298 81.5
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 1.5e-124 449.9 305 82.6
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 2.0e-124 449.5 299 81.6
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 3.4e-124 448.7 304 78.3
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 3.4e-124 448.7 300 79.3
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 4.5e-124 448.4 303 76.9
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 5.8e-124 448.0 303 82.8
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 9.9e-124 447.2 303 77.2
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 9.9e-124 447.2 300 78.7
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 3.8e-123 445.3 303 79.5
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 4.9e-123 444.9 302 80.8
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 6.4e-123 444.5 300 76.7
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 1.4e-122 443.4 301 79.1
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 1.4e-122 443.4 302 77.8
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 1.9e-122 443.0 301 82.1
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 3.2e-122 442.2 300 74.0
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 4.2e-122 441.8 302 79.8
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 5.5e-122 441.4 295 78.3
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 5.5e-122 441.4 300 74.0
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 2.7e-121 439.1 300 79.3
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 6.0e-121 438.0 300 80.0
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 6.0e-121 438.0 283 81.6
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 1.0e-120 437.2 301 78.1
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 2.3e-120 436.0 317 74.4
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 2.3e-120 436.0 302 74.8
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 3.0e-120 435.6 300 75.7
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 3.0e-120 435.6 304 76.0
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 3.9e-120 435.3 302 74.8
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 5.1e-120 434.9 304 76.3
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 5.1e-120 434.9 304 76.3
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 6.7e-120 434.5 303 76.2
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.1e-119 433.7 302 78.1
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 3.3e-119 432.2 300 75.3
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 4.3e-119 431.8 292 76.7
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 5.6e-119 431.4 304 76.0
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 5.6e-119 431.4 302 73.8
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 9.6e-119 430.6 303 77.9
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 9.6e-119 430.6 301 80.1
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 9.6e-119 430.6 300 77.7
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 1.3e-118 430.3 301 79.1
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 4.8e-118 428.3 301 80.1
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 8.1e-118 427.6 301 74.1
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 1.4e-117 426.8 301 79.7
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 3.1e-117 425.6 299 71.2
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 5.3e-117 424.9 300 79.3
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 5.3e-117 424.9 300 79.3
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 5.3e-117 424.9 300 79.3
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 6.9e-117 424.5 303 76.9
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 1.5e-116 423.3 300 74.7
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 1.5e-116 423.3 300 73.0
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 2.0e-116 422.9 303 76.9
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 1.0e-115 420.6 303 71.0
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 2.2e-115 419.5 300 73.7
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 6.5e-115 417.9 301 74.8
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.4e-114 416.8 300 76.3
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 1.3e-112 410.2 310 73.2
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.1e-111 407.1 300 70.7
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 1.6e-110 403.3 312 72.4
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.8e-109 399.8 297 72.1
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 3.1e-109 399.1 302 68.5
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.7e-105 386.0 280 76.1
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 3.5e-105 385.6 300 66.3
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 1.1e-101 374.0 299 66.6
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 1.4e-101 373.6 304 74.3
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 8.8e-96 354.4 300 62.3
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 1.5e-95 353.6 289 67.5
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 2.2e-91 339.7 303 60.1
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 1.4e-90 337.0 323 58.5
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 1.1e-87 327.4 195 80.0
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 4.2e-82 308.9 250 70.0
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 1.0e-80 304.3 301 55.8
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 3.0e-80 302.8 296 56.4
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 8.8e-80 301.2 191 78.5
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 2.6e-79 299.7 250 66.0
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 7.7e-76 288.1 300 58.3
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 1.6e-68 263.8 189 83.1
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 1.3e-67 260.8 299 51.5
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.5e-66 257.3 134 93.3
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.2e-57 227.6 195 64.6
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 1.8e-56 223.8 210 64.8
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.6e-55 219.9 271 53.1
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 7.3e-50 201.8 193 63.2
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 6.2e-49 198.7 310 43.2
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 5.2e-48 195.7 292 46.2
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 9.8e-47 191.4 191 62.3
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 2.5e-42 176.8 178 58.4
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 7.3e-42 175.3 164 64.6
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 3.6e-41 172.9 199 50.3
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 6.8e-40 168.7 227 50.7
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 1.5e-39 167.5 110 78.2
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 1.2e-36 157.9 104 73.1
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 9.9e-31 138.3 106 65.1
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 1.0e-27 128.3 260 42.7
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 8.1e-25 118.6 114 72.8
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 4.4e-23 112.8 113 69.9
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 4.9e-22 109.4 81 66.7
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 1.1e-21 108.2 81 65.4
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 5.4e-21 105.9 95 75.8
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 7.1e-21 105.5 61 78.7
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 1.6e-20 104.4 300 37.7
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 1.3e-19 101.3 101 59.4
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 2.3e-19 100.5 300 37.0
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 3.9e-19 99.8 94 71.3
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 2.5e-18 97.1 68 67.6
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 1.6e-09 67.8 52 73.1
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 2.8e-09 67.0 127 44.1
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 4.9e-06 56.2 35 80.0


User provided reference genes

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