Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 0.0e+00 1116.3 568 100.0
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 1.6e-311 1072.0 568 96.1
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 4.0e-307 1057.4 568 94.4
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 2.2e-305 1051.6 568 93.7
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 1.9e-288 995.3 569 89.5
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 1.8e-283 978.8 572 88.5
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 2.0e-282 975.3 571 88.4
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 1.4e-280 969.1 569 88.2
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 2.1e-276 955.3 582 86.1
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 1.1e-275 953.0 582 85.9
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 2.4e-272 941.8 570 86.3
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 1.5e-269 932.6 572 83.7
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 1.5e-266 922.5 567 83.1
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 1.7e-262 909.1 568 82.0
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 8.7e-262 906.7 575 81.6
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.4e-259 899.4 567 81.7
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 9.9e-258 893.3 569 81.5
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 1.7e-257 892.5 567 81.5
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 8.4e-257 890.2 566 80.9
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.4e-256 889.4 567 81.3
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 5.4e-256 887.5 547 83.7
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 1.0e-254 883.2 566 81.1
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 5.1e-254 880.9 567 80.8
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 1.1e-253 879.8 568 79.2
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 1.5e-253 879.4 587 78.5
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 7.4e-253 877.1 571 80.6
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 9.6e-253 876.7 567 80.4
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 9.6e-253 876.7 569 78.9
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 6.9e-251 870.5 567 80.2
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 1.3e-249 866.3 572 78.1
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 1.3e-249 866.3 569 80.7
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 1.7e-249 865.9 569 78.2
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 3.8e-249 864.8 582 80.1
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 1.1e-248 863.2 568 78.3
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 1.4e-248 862.8 568 79.0
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 3.2e-248 861.7 569 78.2
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 4.2e-248 861.3 566 78.4
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 3.5e-247 858.2 571 78.3
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 1.0e-246 856.7 578 77.5
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 3.0e-246 855.1 566 77.9
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 4.3e-245 851.3 573 78.4
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.8e-244 848.6 575 77.2
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 5.3e-243 844.3 569 76.4
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 1.5e-242 842.8 577 76.6
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 2.2e-241 839.0 572 76.9
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 1.4e-240 836.3 570 76.3
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 5.5e-240 834.3 499 85.0
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 9.3e-240 833.6 571 78.1
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.8e-238 829.3 569 77.2
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 2.3e-238 828.9 568 75.7
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 3.9e-238 828.2 568 77.3
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 6.7e-238 827.4 588 75.2
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 1.1e-237 826.6 569 75.0
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.9e-237 825.9 569 76.8
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 3.3e-237 825.1 569 73.6
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 3.3e-237 825.1 574 77.2
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 7.4e-237 823.9 565 75.6
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.6e-236 822.8 571 75.0
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 6.3e-236 820.8 571 74.8
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 8.2e-236 820.5 571 74.8
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 1.1e-235 820.1 671 67.8
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.8e-235 819.3 571 74.4
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 2.4e-235 818.9 573 75.9
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 1.2e-234 816.6 568 76.1
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.0e-233 813.5 571 74.6
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 2.5e-232 808.9 569 75.4
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 5.5e-232 807.7 569 75.2
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.6e-231 806.2 598 71.4
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 2.1e-231 805.8 570 74.7
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 7.9e-231 803.9 569 75.0
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 2.2e-228 795.8 569 72.6
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.8e-228 795.4 527 78.4
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 5.9e-226 787.7 572 72.6
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 5.9e-226 787.7 516 79.7
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 2.5e-224 782.3 578 71.8
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 5.5e-224 781.2 631 67.4
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 3.9e-222 775.0 588 70.4
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 1.1e-219 766.9 564 71.8
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 2.0e-218 762.7 558 72.4
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 2.0e-218 762.7 559 73.0
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 1.3e-217 760.0 552 72.6
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 8.5e-217 757.3 565 69.9
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 1.1e-216 756.9 549 72.9
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 1.2e-215 753.4 585 67.7
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 8.8e-214 747.3 564 70.4
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 1.1e-213 746.9 567 71.6
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 7.4e-213 744.2 586 70.0
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 8.2e-212 740.7 570 69.1
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 8.2e-212 740.7 556 70.3
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 3.1e-211 738.8 567 69.1
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 3.1e-211 738.8 567 69.1
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 3.1e-211 738.8 567 69.1
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 2.0e-210 736.1 565 69.9
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 7.7e-210 734.2 568 69.0
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 1.0e-209 733.8 734 57.5
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 2.9e-209 732.3 567 68.6
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 5.0e-209 731.5 579 66.8
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 6.5e-209 731.1 567 68.8
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 1.9e-208 729.6 505 73.7
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 1.6e-207 726.5 584 69.0
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 3.0e-206 722.2 556 69.4
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 7.7e-202 707.6 570 70.2
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 3.8e-201 705.3 547 68.9
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 5.7e-197 691.4 418 84.0
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 2.4e-195 686.0 567 66.0
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 2.9e-193 679.1 549 68.5
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 1.1e-192 677.2 568 66.0
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 2.7e-186 656.0 488 70.9
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 8.3e-172 607.8 590 59.0
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 2.9e-156 556.2 384 75.5
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 2.0e-141 506.9 502 56.4
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 2.0e-141 506.9 502 56.4
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 2.0e-141 506.9 502 56.4
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 2.1e-138 496.9 602 49.8
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.2e-133 481.1 595 49.7
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 4.5e-125 452.6 477 56.0
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 3.2e-123 446.4 351 68.1
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 5.5e-123 445.7 262 84.0
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 4.8e-87 326.2 261 67.0
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 4.0e-81 306.6 553 41.4
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 8.8e-81 305.4 196 79.1
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 3.4e-80 303.5 161 93.8
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 4.4e-80 303.1 238 70.2
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 2.7e-77 293.9 348 51.7
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 5.0e-76 289.7 332 54.2
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 2.3e-73 280.8 159 86.8
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 1.7e-71 274.6 271 55.7
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 1.5e-67 261.5 194 71.6
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 1.9e-67 261.2 160 85.6
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 1.5e-64 251.5 415 41.2
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 7.3e-59 232.6 169 73.4
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 4.9e-55 219.9 218 57.8
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.7e-52 211.5 420 40.0
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.8e-49 201.4 134 73.9
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 7.3e-43 179.5 178 59.6
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 1.4e-41 175.3 121 79.3
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 1.4e-41 175.3 115 78.3
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 6.8e-41 172.9 606 30.7
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 7.8e-37 159.5 150 60.7
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 5.1e-36 156.8 155 56.8
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 1.7e-28 131.7 77 84.4
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 4.0e-25 120.6 113 57.5
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 5.8e-24 116.7 78 73.1
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 5.8e-24 116.7 58 94.8
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 3.7e-18 97.4 182 35.2
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 8.1e-18 96.3 69 75.4
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 1.1e-17 95.9 109 47.7
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 1.4e-17 95.5 115 49.6
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.8e-17 95.1 66 77.3
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 9.0e-17 92.8 68 72.1
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 1.0e-15 89.4 137 38.7
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 2.5e-14 84.7 86 50.0
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 6.0e-13 80.1 87 47.1
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.3e-12 78.2 57 77.2
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 3.7e-10 70.9 49 77.6
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 3.4e-08 64.3 64 62.5
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 3.8e-07 60.8 68 45.6
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 5.0e-07 60.5 36 83.3
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 1.4e-06 58.9 53 50.9


User provided reference genes

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