Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G060132 Glycine max HOM05D004601 ORTHO05D005806 5.0e-218 760.8 368 100.0
Glyma.15G166700 Glycine max HOM05D004601 ORTHO05D005806 1.1e-172 610.1 336 89.9
Phvul.009G235800 Phaseolus vulgaris HOM05D004601 ORTHO05D005806 2.3e-167 592.4 336 86.6
VMungo1309G1314 Vigna mungo HOM05D004601 ORTHO05D005806 7.5e-166 587.4 336 86.0
Lj6g0004756 Lotus japonicus HOM05D004601 ORTHO05D005806 1.7e-157 559.7 337 82.8
Lalb_Chr08g0231931 Lupinus albus HOM05D004601 ORTHO05D005806 3.8e-149 531.9 336 76.5
Ca_02111_v3 Cicer arietinum L. HOM05D004601 ORTHO05D005806 6.4e-149 531.2 344 77.6
TPR.G7576 Trifolium pratense HOM05D004601 ORTHO05D000001 7.3e-145 517.7 337 76.6
Psat1g144400 Pisum sativum HOM05D004601 ORTHO05D005806 6.9e-143 511.1 347 73.2
arahy.Tifrunner.gnm1.ann1.BQ8TF8 Arachis hypogaea HOM05D004601 ORTHO05D005806 5.8e-142 508.1 336 73.8
Cfa013456 Carpinus fangiana HOM05D004601 ORTHO05D005806 2.0e-126 456.4 334 67.4
Medtr2g038030 Medicago truncatula HOM05D004601 ORTHO05D005806 2.2e-125 453.0 307 73.0
Dinv25455 Davidia involucrata HOM05D004601 ORTHO05D005806 2.9e-125 452.6 336 65.8
CiPaw.08G032200 Carya illinoinensis HOM05D004601 ORTHO05D005806 4.2e-124 448.7 334 67.1
Potri.018G141900 Populus trichocarpa HOM05D004601 ORTHO05D005806 5.5e-124 448.4 336 64.6
Prupe.1G074600 Prunus persica HOM05D004601 ORTHO05D005806 9.3e-124 447.6 336 64.3
MD16G1247900 Malus domestica HOM05D004601 ORTHO05D005806 1.5e-121 440.3 335 64.2
Sabra18G0116000 Salix brachista HOM05D004601 ORTHO05D005806 1.9e-121 439.9 345 62.3
Ciclev10007283m.g Citrus clementina HOM05D004601 ORTHO05D005806 1.3e-120 437.2 336 62.8
GSVIVG01029314001 Vitis vinifera HOM05D004601 ORTHO05D005806 3.7e-120 435.6 336 63.4
CSS0021444 Camellia sinensis var. sinensis HOM05D004601 ORTHO05D005806 6.3e-120 434.9 336 62.8
TWI63G1718 Tripterygium wilfordii HOM05D004601 ORTHO05D005806 6.3e-120 434.9 336 62.8
Gohir.A13G208300 Gossypium hirsutum HOM05D004601 ORTHO05D005806 1.5e-118 430.3 338 61.2
Duzib150G1331 Durio zibethinus HOM05D004601 ORTHO05D005806 4.5e-118 428.7 358 58.7
Gorai.013G243100 Gossypium raimondii HOM05D004601 ORTHO05D005806 8.5e-117 424.5 338 60.7
Thecc.09G186600 Theobroma cacao HOM05D004601 ORTHO05D005806 1.1e-116 424.1 338 61.5
Gohir.D13G212700 Gossypium hirsutum HOM05D004601 ORTHO05D005806 5.5e-116 421.8 338 60.4
Actinidia02499 Actinidia chinensis HOM05D004601 ORTHO05D005806 2.7e-115 419.5 336 60.7
FvH4_4g07160 Fragaria vesca HOM05D004601 ORTHO05D005806 2.7e-115 419.5 338 61.2
CANSAT11G0507 Cannabis sativa HOM05D004601 ORTHO05D005806 5.1e-114 415.2 334 60.8
RcHm_v2.0_Chr4g0399311 Rosa chinensis HOM05D004601 ORTHO05D005806 1.5e-113 413.7 336 60.7
FAN17G2239 Fragaria x ananassa HOM05D004601 ORTHO05D005806 3.3e-113 412.5 338 60.7
CsaV3_2G008760 Cucumis sativus L. HOM05D004601 ORTHO05D005806 2.2e-112 409.8 336 58.3
FAN22G2150 Fragaria x ananassa HOM05D004601 ORTHO05D005806 2.8e-112 409.5 338 60.4
Cpa.g.sc95.10 Carica papaya HOM05D004601 ORTHO05D005806 4.8e-112 408.7 336 58.6
ECA236G0938 Erigeron canadensis HOM05D004601 ORTHO05D005806 2.4e-111 406.4 337 57.6
MELO3C003972.2 Cucumis melo HOM05D004601 ORTHO05D005806 3.1e-111 406.0 337 58.8
Sed0026596 Sechium edule HOM05D004601 ORTHO05D005806 4.1e-111 405.6 336 59.2
Cc06_g20790 Coffea canephora HOM05D004601 ORTHO05D005806 4.5e-110 402.1 337 57.3
Nn8g40736 Nelumbo nucifera HOM05D004601 ORTHO05D005806 1.0e-109 401.0 337 58.5
HanXRQChr05g0141031 Helianthus annuus HOM05D004601 ORTHO05D005806 8.5e-109 397.9 339 56.6
Aqoxy7G02847 Aquilegia oxysepala HOM05D004601 ORTHO05D005806 3.2e-108 396.0 335 57.9
MSTRG.5939 Avicennia marina HOM05D004601 ORTHO05D005806 4.7e-107 392.1 336 57.4
Sc16g0011160 Simmondsia chinensis HOM05D004601 ORTHO05D005806 7.9e-107 391.3 339 57.5
Migut.J00793 Erythranthe guttata HOM05D004601 ORTHO05D005806 2.3e-106 389.8 337 56.7
PSO063G2966 Papaver somniferum HOM05D004601 ORTHO05D005806 3.9e-106 389.0 336 55.1
PGR142G2375 Punica granatum HOM05D004601 ORTHO05D005806 3.9e-106 389.0 336 57.7
PGR142G4125 Punica granatum HOM05D004601 ORTHO05D005806 3.9e-106 389.0 336 57.7
PSO170G3696 Papaver somniferum HOM05D004601 ORTHO05D005806 6.7e-106 388.3 336 55.7
Lsat_1_v5_gn_8_69120 Lactuca sativa HOM05D004601 ORTHO05D005806 1.7e-104 383.6 337 55.8
EL10Ac4g10170 Beta vulgaris HOM05D004601 ORTHO05D005806 9.1e-103 377.9 341 54.8
Manes.14G159112 Manihot esculenta HOM05D004601 ORTHO05D005806 9.1e-103 377.9 292 63.4
Sopen07g006920 Solanum pennellii HOM05D004601 ORTHO05D005806 2.6e-102 376.3 337 53.1
CAN.G285.4 Capsicum annuum HOM05D004601 ORTHO05D005806 4.5e-102 375.6 337 53.1
arahy.Tifrunner.gnm1.ann1.LL4FRQ Arachis hypogaea HOM05D004601 ORTHO05D005806 1.0e-101 374.4 278 66.2
Eucgr.C00108 Eucalyptus grandis HOM05D004601 ORTHO05D005806 6.5e-101 371.7 336 54.8
BolC9t57749H Brassica oleracea HOM05D004601 ORTHO05D005806 1.4e-100 370.5 337 54.0
AL8G33090 Arabidopsis lyrata HOM05D004601 ORTHO05D005806 2.5e-100 369.8 336 53.3
A10p14520 Brassica napus HOM05D004601 ORTHO05D005806 5.5e-100 368.6 337 53.7
BcaC04g19998 Brassica carinata HOM05D004601 ORTHO05D005806 7.2e-100 368.2 336 53.0
AUR62039835 Chenopodium quinoa HOM05D004601 ORTHO05D005806 1.2e-99 367.5 338 53.8
AT5G57160 Arabidopsis thaliana HOM05D004601 ORTHO05D005806 1.6e-99 367.1 336 53.3
BcaC04g19995 Brassica carinata HOM05D004601 ORTHO05D005806 1.6e-99 367.1 337 54.0
C09p48970 Brassica napus HOM05D004601 ORTHO05D005806 2.7e-99 366.3 337 53.7
CARHR270950 Cardamine hirsuta HOM05D004601 ORTHO05D005806 8.0e-99 364.8 336 51.8
Thhalv10012474m.g Eutrema salsugineum HOM05D004601 ORTHO05D005806 8.0e-99 364.8 337 52.5
BraA10t43541Z Brassica rapa HOM05D004601 ORTHO05D005806 1.8e-98 363.6 338 53.3
Carub.0008s1767 Capsella rubella HOM05D004601 ORTHO05D005806 3.9e-98 362.5 336 52.4
Sp6g18890 Schrenkiella parvula HOM05D004601 ORTHO05D005806 3.9e-98 362.5 336 53.0
THA.LOC104817773 Tarenaya hassleriana HOM05D004601 ORTHO05D005806 9.7e-97 357.8 336 52.1
AUR62000175 Chenopodium quinoa HOM05D004601 ORTHO05D005806 1.3e-96 357.5 337 52.8
Ah.06g194430 Amaranthus hybridus HOM05D004601 ORTHO05D005806 3.5e-94 349.4 347 51.3
Rhsim03G0267200 Rhododendron simsii HOM05D004601 ORTHO05D005806 2.2e-93 346.7 336 52.4
Nitab4.5_0000056g0060 Nicotiana tabacum HOM05D004601 ORTHO05D005806 3.8e-93 345.9 375 47.2
Hma1.2p1_0235F.1_g098690 Hydrangea macrophylla HOM05D004601 ORTHO05D005806 1.9e-92 343.6 336 51.2
vmacro05994 Vaccinium macrocarpon HOM05D004601 ORTHO05D005806 3.2e-92 342.8 336 52.4
Solyc07g018000.3 Solanum lycopersicum HOM05D004601 ORTHO05D005806 2.1e-91 340.1 321 51.4
MBI16_g47869_MAGBIO Magnolia biondii HOM05D004601 ORTHO05D005806 2.3e-90 336.7 312 55.1
HPP92_021964 Vanilla planifolia HOM05D004601 ORTHO05D005806 1.5e-89 334.0 336 49.7
Peaxi162Scf00231g01115 Petunia axillaris HOM05D004601 ORTHO05D005806 1.7e-88 330.5 318 52.2
CDE07G0894 Ceratophyllum demersum HOM05D004601 ORTHO05D005806 4.8e-88 328.9 336 47.6
FAN12G1367 Fragaria x ananassa HOM05D004601 ORTHO05D005806 2.0e-86 323.6 336 50.0
Aa31LG3G13060 Aethionema arabicum HOM05D004601 ORTHO05D005806 6.5e-85 318.5 335 48.1
Zm00001eb071490 Zea mays HOM05D004601 ORTHO05D005806 1.4e-82 310.8 343 44.3
ClCG11G011720 Citrullus lanatus HOM05D004601 ORTHO05D005806 4.4e-81 305.8 336 48.8
SalBow6G1386 Salvia bowleyana HOM05D004601 ORTHO05D005806 8.3e-80 301.6 296 52.0
COL.COLO4_06398 Corchorus olitorius HOM05D004601 ORTHO05D005806 1.7e-77 293.9 338 46.7
TAR383G0412 Trochodendron aralioides HOM05D004601 ORTHO05D005806 5.5e-76 288.9 196 68.9
Aqoxy295s002 Aquilegia oxysepala HOM05D004601 ORTHO05D005806 1.2e-75 287.7 252 56.0
SGA_v2.0_scaffold112G31593 Striga asiatica HOM05D004601 ORTHO05D005806 3.5e-70 269.6 249 51.4
ATR0626G236 Amborella trichopoda HOM05D004601 ORTHO05D005806 5.9e-70 268.9 336 42.9
Hma1.2p1_0235F.1_g098680 Hydrangea macrophylla HOM05D004601 ORTHO05D005806 1.3e-69 267.7 196 66.3
Mapoly0001s0137 Marchantia polymorpha HOM05D004601 ORTHO05D005806 5.0e-69 265.8 351 41.6
Psat5g051520 Pisum sativum HOM05D004601 ORTHO05D005806 2.5e-68 263.5 165 78.8
Pp3c14_5920 Physcomitrium patens HOM05D004601 ORTHO05D005806 1.9e-60 237.3 344 39.8
Lj7A622G14 Lonicera japonica HOM05D004601 ORTHO05D005806 3.3e-60 236.5 292 45.9
SEGI_28566 Sequoiadendron giganteum HOM05D004601 ORTHO05D005806 1.2e-57 228.0 196 54.6
SHI03064 Sapria himalayana HOM05D004601 ORTHO05D005806 3.4e-57 226.5 298 44.6
BcaB08g35989 Brassica carinata HOM05D004601 ORTHO05D005806 1.5e-49 201.1 276 43.1
AagrBONN_evm.TU.Sc2ySwM_228.1820 Anthoceros agrestis HOM05D004601 ORTHO05D005806 1.1e-47 194.9 206 48.5
SMO144G0133 Selaginella moellendorffii HOM05D004601 ORTHO05D005806 1.6e-46 191.0 340 35.0
ECA236G2032 Erigeron canadensis HOM05D004601 ORTHO05D005806 3.0e-45 186.8 174 51.1
DCAR_020147 Daucus carota HOM05D004601 ORTHO05D005806 6.6e-45 185.7 335 36.4
MBI16_g10345_MAGBIO Magnolia biondii HOM05D004601 ORTHO05D005806 8.9e-42 175.3 219 42.9
Atru.chr7.956 Acer truncatum HOM05D004601 ORTHO05D005806 2.4e-31 140.6 162 47.5
AagrBONN_evm.TU.Sc2ySwM_228.3225 Anthoceros agrestis HOM05D004601 ORTHO05D005806 9.3e-31 138.7 349 27.5
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 2.1e-27 127.5 95 68.4
arahy.Tifrunner.gnm1.ann1.8TE3EA Arachis hypogaea HOM05D004601 ORTHO05D005806 3.6e-27 126.7 86 76.7
Oeu019558.1 Olea europaea HOM05D004601 ORTHO05D005806 9.3e-23 112.1 86 67.4
Rhsim01G0115200 Rhododendron simsii HOM05D004601 ORTHO05D005806 1.1e-18 98.6 268 31.7
CBR_g50206 Chara braunii HOM05D000019 ORTHO05D000048 9.0e-18 95.5 164 33.5
RhsimUnG0137600 Rhododendron simsii HOM05D004601 ORTHO05D005806 5.8e-17 92.8 132 45.5
SalBow7G2616 Salvia bowleyana HOM05D005568 ORTHO05D006940 4.9e-16 89.7 67 62.7
Aqoxy295s003 Aquilegia oxysepala HOM05D004601 ORTHO05D005806 2.5e-07 60.8 32 75.0
Lj7A622G13 Lonicera japonica HOM05D004601 ORTHO05D005806 4.6e-06 56.6 48 50.0


User provided reference genes

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