Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 1.3e-215 753.1 475 100.0
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 2.1e-152 543.1 492 79.7
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 3.0e-122 443.0 554 64.1
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 1.1e-121 441.0 538 65.8
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 6.6e-106 388.7 461 58.1
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 3.6e-104 382.9 435 53.1
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 2.2e-101 373.6 488 50.4
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 1.4e-100 370.9 402 54.5
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 3.2e-100 369.8 442 52.7
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 7.1e-100 368.6 442 52.3
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 2.7e-91 340.1 452 53.5
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 6.9e-87 325.5 181 86.7
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 7.4e-81 305.4 441 44.7
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 7.4e-81 305.4 433 43.6
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 2.2e-80 303.9 454 44.5
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 1.4e-79 301.2 441 44.2
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 1.8e-79 300.8 444 45.0
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 1.7e-77 294.3 452 44.2
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 6.5e-77 292.4 474 40.7
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 3.2e-76 290.0 441 42.9
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 5.5e-76 289.3 450 47.6
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 7.2e-76 288.9 452 40.3
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 3.6e-75 286.6 441 43.1
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 3.9e-74 283.1 452 41.6
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 5.1e-74 282.7 447 41.8
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 6.7e-74 282.3 465 39.4
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 5.7e-73 279.3 452 43.4
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 1.3e-72 278.1 409 43.5
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 3.7e-72 276.6 445 45.4
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 8.2e-72 275.4 181 72.4
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 1.5e-70 271.2 181 70.2
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 2.0e-70 270.8 463 39.3
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 3.4e-70 270.0 451 39.5
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 7.7e-70 268.9 181 69.1
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 1.0e-69 268.5 180 70.6
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 1.0e-69 268.5 455 40.7
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 1.3e-69 268.1 471 41.8
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 1.1e-68 265.0 182 69.8
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 2.5e-68 263.8 522 37.0
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 4.2e-68 263.1 181 70.2
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 5.5e-68 262.7 452 40.9
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 2.7e-67 260.4 537 38.2
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 6.1e-67 259.2 179 69.3
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 7.9e-67 258.8 456 40.6
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 2.3e-66 257.3 445 39.6
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 3.0e-66 256.9 180 68.3
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 3.9e-66 256.5 181 68.0
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 5.1e-66 256.1 450 39.8
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 6.7e-66 255.8 528 37.7
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 6.7e-66 255.8 181 66.3
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 3.3e-65 253.4 184 65.8
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.7e-64 251.1 445 38.9
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 1.7e-64 251.1 440 38.6
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 1.7e-64 251.1 282 48.6
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 2.2e-64 250.8 199 61.3
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 8.2e-64 248.8 182 62.6
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 8.2e-64 248.8 497 37.0
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 8.2e-64 248.8 184 65.2
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 1.1e-63 248.4 181 64.1
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 1.4e-63 248.1 181 64.1
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 2.4e-63 247.3 181 62.4
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 2.4e-63 247.3 181 64.6
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 3.4e-62 243.4 451 38.6
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 5.9e-62 242.7 447 37.6
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 1.7e-61 241.1 188 62.2
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 6.5e-61 239.2 486 35.6
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 3.2e-60 236.9 180 61.7
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 5.5e-60 236.1 187 61.5
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 9.4e-60 235.3 196 60.2
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 3.6e-59 233.4 458 36.7
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 4.7e-59 233.0 457 38.5
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 2.3e-58 230.7 181 58.6
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 2.3e-58 230.7 181 59.1
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 8.8e-58 228.8 175 60.6
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 1.1e-57 228.4 181 61.9
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 2.6e-57 227.3 180 61.1
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 5.7e-57 226.1 186 62.4
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 1.3e-56 224.9 180 60.6
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 2.2e-56 224.2 180 59.4
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 4.1e-55 219.9 467 33.6
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 4.1e-55 219.9 180 60.0
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 2.0e-54 217.6 180 58.3
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 4.5e-54 216.5 431 35.0
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 3.8e-53 213.4 436 34.2
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 5.0e-53 213.0 180 57.2
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 5.0e-53 213.0 187 58.8
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 2.5e-52 210.7 184 56.0
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 4.2e-52 209.9 582 33.7
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 5.5e-52 209.5 438 33.6
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 5.5e-52 209.5 438 33.6
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.2e-51 208.4 177 56.5
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 1.6e-51 208.0 424 35.1
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 2.1e-51 207.6 150 64.0
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 2.7e-51 207.2 438 33.3
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 3.6e-51 206.8 182 55.5
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 3.6e-51 206.8 424 34.7
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 2.3e-50 204.1 182 54.4
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 2.3e-50 204.1 176 54.5
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 5.2e-50 203.0 191 48.2
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 8.8e-50 202.2 177 54.2
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 2.0e-49 201.1 203 50.2
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 2.0e-49 201.1 203 50.2
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 3.3e-49 200.3 183 54.1
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 1.7e-48 198.0 182 53.8
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 3.7e-48 196.8 181 53.0
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 3.7e-48 196.8 201 48.3
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 4.8e-48 196.4 177 53.1
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 1.8e-47 194.5 181 55.2
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 8.5e-45 185.7 180 53.9
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 1.5e-44 184.9 179 53.6
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 1.8e-42 177.9 179 52.0
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.2e-41 175.3 452 31.4
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.4e-39 167.5 454 32.4
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 5.9e-38 162.9 203 42.4
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 7.7e-38 162.5 203 41.4
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 6.8e-34 149.4 195 40.0
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 8.3e-32 142.5 198 39.4
Psat7g050000 Pisum sativum HOM05D005778 ORTHO05D007245 1.2e-25 122.1 124 62.1
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 5.8e-17 93.2 249 27.7
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 3.7e-16 90.5 215 30.7
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 8.3e-16 89.4 62 69.4
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 1.1e-15 89.0 62 62.9
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.1e-14 84.7 303 30.7
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 3.3e-12 77.4 49 71.4
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 4.3e-12 77.0 65 52.3
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 3.1e-10 70.9 60 53.3
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 7.5e-09 66.2 135 40.0


User provided reference genes

Program Settings