Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 1.8e-174 615.9 339 100.0
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 2.0e-168 595.9 339 97.1
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 1.4e-161 573.2 339 95.6
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 9.7e-160 567.0 341 92.7
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.1e-158 563.5 342 93.9
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 1.8e-158 562.8 355 91.3
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 1.6e-157 559.7 339 92.3
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 2.0e-157 559.3 340 91.2
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 1.0e-156 557.0 339 91.7
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.7e-156 556.2 339 90.6
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 8.5e-156 553.9 339 91.2
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 2.5e-155 552.4 342 92.7
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 4.2e-155 551.6 339 90.3
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 1.2e-154 550.1 339 90.6
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 2.7e-154 548.9 339 89.7
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 4.7e-154 548.1 339 89.7
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 8.0e-154 547.4 339 85.8
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 8.0e-154 547.4 339 89.7
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 8.0e-154 547.4 339 89.7
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 8.0e-154 547.4 339 90.0
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 1.0e-153 547.0 339 90.3
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 1.8e-153 546.2 339 89.1
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 3.0e-153 545.4 339 90.0
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 5.2e-153 544.7 339 90.0
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 8.8e-153 543.9 340 88.8
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 2.6e-152 542.3 349 87.1
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 9.7e-152 540.4 339 88.5
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 2.2e-151 539.3 339 89.1
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 3.7e-151 538.5 339 89.1
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 1.8e-150 536.2 339 88.5
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 2.4e-150 535.8 339 87.9
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 2.4e-150 535.8 339 88.5
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 2.4e-150 535.8 339 88.5
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 3.1e-150 535.4 339 88.5
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 4.1e-150 535.0 339 87.9
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 5.3e-150 534.6 339 87.9
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 9.1e-150 533.9 339 89.4
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.2e-149 533.5 339 86.1
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.6e-149 533.1 339 82.0
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 2.0e-149 532.7 339 86.1
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 5.9e-149 531.2 339 87.0
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 1.0e-148 530.4 340 84.7
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 1.0e-148 530.4 340 86.2
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 1.3e-148 530.0 340 84.4
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 1.3e-148 530.0 339 89.1
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 1.7e-148 529.6 340 84.4
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 2.2e-148 529.3 339 87.3
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 6.5e-148 527.7 339 87.3
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 6.5e-148 527.7 339 86.7
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 6.5e-148 527.7 338 86.4
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 6.5e-148 527.7 338 86.4
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 1.9e-147 526.2 340 89.1
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 3.2e-147 525.4 340 85.6
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 3.2e-147 525.4 339 85.8
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 3.2e-147 525.4 339 87.3
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 3.2e-147 525.4 339 87.3
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 4.2e-147 525.0 339 85.8
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 7.2e-147 524.2 339 87.0
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 7.2e-147 524.2 339 87.0
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 1.2e-146 523.5 340 85.0
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 1.6e-146 523.1 339 87.0
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 2.1e-146 522.7 339 85.3
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.7e-146 522.3 326 91.4
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.7e-146 522.3 326 91.4
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 2.7e-146 522.3 323 91.6
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 3.6e-146 521.9 359 83.3
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 3.0e-145 518.8 339 87.3
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.2e-144 516.9 339 85.5
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 1.5e-144 516.5 339 86.7
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 2.0e-144 516.2 339 85.5
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 9.8e-144 513.8 365 80.8
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 9.8e-144 513.8 340 85.6
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 9.8e-144 513.8 339 85.0
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 2.8e-143 512.3 323 89.8
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 4.8e-143 511.5 357 82.4
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 4.8e-143 511.5 357 82.4
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 6.3e-143 511.1 339 85.3
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 1.1e-142 510.4 340 84.1
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 1.1e-142 510.4 340 84.1
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 1.1e-142 510.4 372 79.6
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 1.8e-142 509.6 323 87.9
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 2.4e-142 509.2 347 82.7
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 3.1e-142 508.8 353 82.7
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 4.1e-142 508.4 349 82.5
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 4.1e-142 508.4 339 82.0
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 4.1e-142 508.4 340 85.0
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 5.4e-142 508.1 332 86.1
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 1.2e-141 506.9 339 85.8
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 5.9e-141 504.6 339 84.7
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 1.0e-140 503.8 349 81.7
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 1.0e-140 503.8 332 86.4
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 5.0e-140 501.5 333 84.7
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 1.5e-139 500.0 339 78.8
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.5e-139 500.0 340 80.6
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 7.2e-139 497.7 351 82.1
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 9.5e-139 497.3 339 83.5
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.2e-138 496.9 339 82.6
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 5.2e-137 491.5 377 76.1
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 4.4e-136 488.4 339 80.2
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 7.5e-136 487.6 369 76.7
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.0e-133 479.6 339 82.6
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 6.1e-130 468.0 284 91.5
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.4e-129 466.8 368 76.4
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.4e-129 466.8 368 76.4
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 4.0e-129 465.3 339 72.0
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 5.8e-128 461.5 340 79.1
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 5.8e-128 461.5 307 87.0
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.3e-127 460.3 339 77.3
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 2.2e-119 433.0 335 78.8
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 2.9e-119 432.6 354 71.8
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 1.1e-118 430.6 516 55.2
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 2.5e-115 419.5 276 89.5
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 5.8e-112 408.3 226 88.1
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.6e-109 398.7 341 73.9
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 1.1e-105 387.5 321 74.8
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 1.2e-101 374.0 257 87.5
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 8.7e-100 367.9 322 72.7
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 8.1e-98 361.3 277 75.8
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.0e-97 359.0 339 67.0
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 7.8e-93 344.7 339 64.9
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 9.6e-91 337.8 382 49.7
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 5.6e-83 312.0 147 100.0
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 9.0e-81 304.7 334 52.4
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 1.9e-67 260.4 184 72.3
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 1.5e-64 250.8 213 77.0
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 4.2e-62 242.7 326 44.8
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 3.6e-53 213.0 116 86.2
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 7.2e-46 188.7 167 67.7
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.6e-43 180.3 82 100.0
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 5.3e-41 172.6 91 94.5
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 4.2e-38 162.9 89 98.9
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 9.7e-35 151.8 89 89.9
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 5.0e-23 112.8 55 98.2
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.2e-21 108.2 64 92.2
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 1.7e-18 97.8 203 29.6
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.8e-17 94.4 200 32.5
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.1e-14 85.1 64 65.6
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.1e-13 80.9 78 83.3
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 4.7e-13 79.7 39 92.3
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.9e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.9e-12 75.5 41 90.2
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 2.9e-10 70.5 45 75.6
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 3.7e-10 70.1 30 96.7


User provided reference genes

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