Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G212600 Glycine max HOM05D003501 ORTHO05D004388 3.9e-27 124.0 61 100.0
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 1.5e-23 112.1 58 89.7
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 2.0e-23 111.7 58 87.9
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 3.4e-23 110.9 58 89.7
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 3.4e-23 110.9 58 89.7
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 2.9e-22 107.8 58 84.5
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 2.9e-22 107.8 58 87.9
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 3.8e-22 107.5 58 84.5
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 3.8e-22 107.5 58 86.2
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 1.9e-21 105.1 58 79.3
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 5.5e-21 103.6 58 82.8
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 5.5e-21 103.6 58 81.0
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 5.5e-21 103.6 57 86.0
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 2.7e-20 101.3 58 81.0
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 2.7e-20 101.3 58 81.0
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 4.6e-20 100.5 58 79.3
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 7.9e-20 99.8 58 79.3
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 6.7e-19 96.7 58 75.9
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 1.1e-18 95.9 58 77.6
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 1.1e-18 95.9 58 75.9
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 1.5e-18 95.5 58 75.9
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 1.5e-18 95.5 58 75.9
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 1.5e-18 95.5 58 75.9
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 1.5e-18 95.5 58 75.9
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 1.9e-18 95.1 58 75.9
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 1.9e-18 95.1 58 75.9
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 1.9e-18 95.1 57 77.2
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 2.5e-18 94.7 55 78.2
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 2.5e-18 94.7 57 77.2
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 3.3e-18 94.4 58 75.9
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 3.3e-18 94.4 58 74.1
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 3.3e-18 94.4 57 77.2
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 5.7e-18 93.6 58 75.9
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 5.7e-18 93.6 58 75.9
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 5.7e-18 93.6 55 78.2
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 5.7e-18 93.6 56 76.8
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 7.4e-18 93.2 57 71.9
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 7.4e-18 93.2 57 75.4
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 9.7e-18 92.8 58 75.9
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 9.7e-18 92.8 58 75.9
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 1.3e-17 92.4 56 75.0
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 1.3e-17 92.4 57 75.4
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 1.3e-17 92.4 58 74.1
Actinidia15653 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.6e-17 92.0 58 72.4
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.6e-17 92.0 58 72.4
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 1.6e-17 92.0 58 70.7
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 2.2e-17 91.7 56 75.0
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 2.2e-17 91.7 58 72.4
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 2.2e-17 91.7 58 72.4
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 2.2e-17 91.7 57 73.7
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 2.8e-17 91.3 57 75.4
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 3.7e-17 90.9 57 71.9
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 3.7e-17 90.9 57 75.4
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 3.7e-17 90.9 58 70.7
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 3.7e-17 90.9 57 73.7
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 4.8e-17 90.5 57 73.7
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 4.8e-17 90.5 58 72.4
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 4.8e-17 90.5 58 70.7
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 6.3e-17 90.1 53 79.2
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 8.2e-17 89.7 56 76.8
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 1.1e-16 89.4 58 72.4
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 1.4e-16 89.0 56 71.4
Prupe.6G112100 Prunus persica HOM05D003501 ORTHO05D004388 1.4e-16 89.0 58 70.7
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 1.4e-16 89.0 56 76.8
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 1.8e-16 88.6 58 74.1
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 1.8e-16 88.6 57 71.9
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 1.8e-16 88.6 57 71.9
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 1.8e-16 88.6 57 71.9
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 1.8e-16 88.6 57 71.9
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 2.4e-16 88.2 57 73.7
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 3.1e-16 87.8 58 69.0
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 3.1e-16 87.8 58 69.0
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 4.1e-16 87.4 56 71.4
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 6.9e-16 86.7 58 70.7
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 6.9e-16 86.7 58 70.7
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 9.0e-16 86.3 58 70.7
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 9.0e-16 86.3 56 69.6
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 9.0e-16 86.3 56 69.6
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 1.2e-15 85.9 57 71.9
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 1.2e-15 85.9 57 71.9
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 1.2e-15 85.9 55 70.9
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.2e-15 85.9 57 71.9
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 1.5e-15 85.5 56 67.9
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 2.0e-15 85.1 57 70.2
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 2.0e-15 85.1 57 71.9
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 2.0e-15 85.1 57 70.2
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 2.0e-15 85.1 56 67.9
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 2.6e-15 84.7 57 70.2
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 2.6e-15 84.7 58 69.0
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 3.4e-15 84.3 58 67.2
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 4.5e-15 84.0 56 69.6
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 5.9e-15 83.6 56 66.1
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 7.7e-15 83.2 52 73.1
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 7.7e-15 83.2 58 67.2
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 1.0e-14 82.8 57 70.2
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 1.3e-14 82.4 57 70.2
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 1.3e-14 82.4 57 70.2
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 1.3e-14 82.4 57 70.2
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 1.3e-14 82.4 57 70.2
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 1.3e-14 82.4 57 70.2
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 1.3e-14 82.4 57 70.2
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 1.3e-14 82.4 57 70.2
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 1.3e-14 82.4 57 70.2
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 1.3e-14 82.4 56 69.6
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 2.2e-14 81.6 57 68.4
SMO330G0055 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.2e-14 81.6 56 66.1
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 2.9e-14 81.3 57 68.4
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 2.9e-14 81.3 57 68.4
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 3.8e-14 80.9 57 68.4
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 5.0e-14 80.5 57 68.4
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 5.0e-14 80.5 57 68.4
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 5.0e-14 80.5 58 65.5
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 5.0e-14 80.5 58 65.5
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 5.0e-14 80.5 56 64.3
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 8.5e-14 79.7 55 65.5
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.1e-13 79.3 57 66.7
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 1.1e-13 79.3 58 63.8
SMO364G0671 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.4e-13 79.0 55 65.5
SMO004G0007 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.2e-13 77.8 56 62.5
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 4.2e-13 77.4 58 65.5
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 5.5e-13 77.0 58 62.1
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 7.2e-13 76.6 57 66.7
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 1.2e-12 75.9 55 67.3
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 1.6e-12 75.5 45 73.3
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 1.6e-12 75.5 56 62.5
SMO112G0083 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.1e-12 75.1 55 61.8
SMO065G0004 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.1e-12 73.6 56 60.7
SMO269G0020 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.0e-11 72.8 50 68.0
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 1.4e-11 72.4 56 58.9
Prupe.6G111200 Prunus persica HOM05D003501 ORTHO05D004388 1.4e-11 72.4 66 53.0
HPP92_028228 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.8e-11 72.0 45 75.6
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.3e-11 71.6 49 69.4
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 1.1e-10 69.3 53 64.2
HPP92_000028 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.3e-10 67.8 45 71.1
HPP92_028030 Vanilla planifolia HOM05D003501 ORTHO05D004388 5.7e-10 67.0 42 73.8
SMO114G0139 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.4e-10 66.6 46 67.4
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 4.8e-09 63.9 56 50.0
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 6.3e-09 63.5 43 69.8
SMO112G0124 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.4e-08 62.4 46 65.2
SMO112G0081 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 1.2e-07 59.3 40 65.0
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 4.5e-07 57.4 51 54.9
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 7.7e-07 56.6 63 50.8
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 1.3e-06 55.8 58 44.8


User provided reference genes

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