Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 2.6e-121 438.7 223 100.0
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 3.0e-117 425.2 223 96.0
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 9.7e-116 420.2 223 94.2
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 2.9e-112 408.7 223 91.9
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 2.4e-106 389.0 223 87.0
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 1.5e-105 386.3 223 86.1
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 5.0e-104 381.3 223 85.2
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 1.4e-101 373.2 223 84.3
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 3.9e-101 371.7 221 81.4
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 1.4e-98 363.2 222 81.5
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 3.1e-98 362.1 223 79.8
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 7.0e-98 360.9 222 81.1
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 1.6e-97 359.8 225 80.0
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 2.6e-97 359.0 222 79.7
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 3.5e-81 305.4 346 51.2
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 5.9e-81 304.7 222 68.5
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 3.2e-79 298.9 223 67.3
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 2.7e-78 295.8 223 66.4
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 3.0e-77 292.4 168 88.7
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 1.5e-76 290.0 222 64.9
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 1.5e-76 290.0 222 64.4
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 3.4e-76 288.9 223 64.6
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 4.4e-76 288.5 223 64.1
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 3.1e-74 282.3 224 63.8
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 7.0e-74 281.2 222 65.3
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 7.0e-74 281.2 223 63.2
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 1.2e-73 280.4 223 64.1
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.6e-73 280.0 223 62.3
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-73 280.0 224 62.9
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 1.6e-73 280.0 224 62.9
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.7e-73 279.3 224 63.4
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 5.9e-73 278.1 223 62.8
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-72 276.9 224 62.1
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-72 276.9 224 62.1
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-72 276.9 224 62.1
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 3.8e-72 275.4 223 63.2
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.0e-72 275.0 224 62.1
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.0e-72 275.0 224 61.6
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.0e-72 275.0 224 61.6
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.0e-72 275.0 224 61.6
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-71 273.9 224 61.6
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 1.1e-71 273.9 223 63.2
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 1.9e-71 273.1 223 61.9
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 4.3e-71 271.9 220 61.8
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 1.2e-70 270.4 223 64.1
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 1.6e-70 270.0 223 61.9
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 2.8e-70 269.2 214 62.6
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 3.6e-70 268.9 224 61.6
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 6.1e-70 268.1 213 62.9
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 6.1e-70 268.1 223 59.6
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 8.0e-70 267.7 223 62.3
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 1.0e-69 267.3 227 62.6
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.4e-69 266.9 224 61.6
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 1.4e-69 266.9 208 65.4
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 1.8e-69 266.5 220 65.0
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 6.8e-69 264.6 224 61.2
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 5.7e-68 261.5 201 66.2
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 1.3e-67 260.4 223 61.9
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 4.1e-66 255.4 227 61.2
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 7.0e-66 254.6 223 58.7
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 9.2e-66 254.2 222 60.4
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 1.2e-65 253.8 223 59.6
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 1.2e-65 253.8 223 61.0
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 1.2e-65 253.8 223 60.1
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 2.0e-65 253.1 226 59.3
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 2.7e-65 252.7 223 60.5
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 2.7e-65 252.7 223 58.3
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 5.9e-65 251.5 225 58.7
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 7.8e-65 251.1 222 58.1
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 7.8e-65 251.1 222 60.4
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 7.8e-65 251.1 221 59.7
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 3.9e-64 248.8 223 59.2
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 3.9e-64 248.8 223 60.1
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 1.5e-63 246.9 222 58.1
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 1.9e-63 246.5 221 58.4
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 2.5e-63 246.1 223 58.7
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 1.2e-62 243.8 222 58.1
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 2.1e-62 243.0 253 53.0
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 1.0e-61 240.7 188 67.6
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 6.8e-61 238.0 222 57.2
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 8.9e-61 237.7 213 59.6
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 8.9e-61 237.7 225 57.3
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 1.2e-60 237.3 222 56.8
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 1.2e-60 237.3 222 57.2
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 1.5e-60 236.9 203 63.1
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 1.5e-60 236.9 223 57.4
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 1.5e-60 236.9 218 56.9
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 3.4e-60 235.7 213 59.2
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 4.4e-60 235.3 222 56.8
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 5.8e-60 235.0 222 56.3
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 5.8e-60 235.0 222 56.3
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 5.8e-60 235.0 222 56.3
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 2.9e-59 232.6 222 55.9
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.9e-59 232.6 202 59.9
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 3.7e-59 232.3 223 56.5
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 4.9e-59 231.9 235 55.3
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 6.4e-59 231.5 222 55.4
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 6.4e-59 231.5 239 54.8
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 4.1e-58 228.8 232 55.2
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 9.2e-58 227.6 230 54.3
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 9.2e-58 227.6 268 50.4
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 1.2e-57 227.3 232 55.2
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 2.0e-57 226.5 218 57.8
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 2.7e-57 226.1 227 55.5
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 3.5e-57 225.7 231 51.1
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 4.6e-57 225.3 208 57.2
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 4.6e-57 225.3 260 51.9
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 7.8e-57 224.6 230 56.1
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 2.3e-56 223.0 198 60.6
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 5.0e-56 221.9 196 60.2
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 1.1e-55 220.7 196 60.7
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 3.3e-55 219.2 185 63.2
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 3.3e-55 219.2 277 48.4
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 4.3e-55 218.8 186 59.7
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 5.6e-55 218.4 259 49.8
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-54 216.9 170 65.3
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 1.4e-53 213.8 211 55.9
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 2.3e-53 213.0 196 60.2
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 8.9e-53 211.1 199 58.3
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 6.0e-49 198.4 219 53.9
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 6.0e-49 198.4 275 45.5
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 1.4e-45 187.2 193 56.5
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 1.8e-45 186.8 198 53.5
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 2.3e-45 186.4 151 66.2
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.3e-45 186.4 151 62.3
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.9e-43 179.5 157 59.2
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 3.3e-39 166.0 143 66.4
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 4.0e-37 159.1 138 61.6
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 4.0e-37 159.1 147 59.9
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 7.6e-36 154.8 179 53.6
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 1.1e-34 151.0 142 58.5
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 2.4e-34 149.8 139 58.3
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 2.3e-32 143.3 129 60.5
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 7.3e-31 138.3 100 75.0
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 2.8e-30 136.3 190 40.5
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 6.2e-30 135.2 134 56.7
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 9.9e-28 127.9 187 41.7
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 1.1e-26 124.4 198 39.4
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 3.2e-26 122.9 94 62.8
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 4.2e-26 122.5 130 51.5
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 3.5e-25 119.4 192 37.5
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 1.8e-21 107.1 94 59.6
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 1.4e-18 97.4 95 54.7
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 1.9e-18 97.1 94 53.2
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 2.1e-17 93.6 98 53.1
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.0e-16 91.3 62 64.5
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 1.3e-16 90.9 154 40.3
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 4.8e-14 82.4 166 34.9
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 6.9e-13 78.6 60 61.7
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 2.0e-12 77.0 50 70.0
arahy.Tifrunner.gnm1.ann1.6AA68Y Arachis hypogaea HOM05D001355 ORTHO05D006435 6.5e-11 72.0 93 52.7
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 2.3e-08 63.5 189 29.6


User provided reference genes

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