Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 2.1e-183 645.6 330 100.0
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 7.5e-157 557.4 330 89.7
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 6.3e-156 554.3 330 85.5
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 3.9e-153 545.0 330 83.9
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 9.5e-136 487.3 329 77.2
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 2.4e-131 472.6 337 71.2
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 6.6e-129 464.5 328 72.3
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 6.6e-129 464.5 337 73.3
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 8.6e-129 464.2 308 76.6
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 2.1e-127 459.5 331 72.5
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 6.2e-127 458.0 315 73.0
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 1.4e-126 456.8 303 75.9
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 1.4e-126 456.8 335 69.9
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.0e-126 455.3 308 73.1
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 5.2e-126 454.9 337 69.7
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 1.5e-125 453.4 338 73.4
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 1.5e-125 453.4 320 70.6
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 2.0e-125 453.0 341 70.4
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 2.0e-125 453.0 313 73.2
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 4.4e-125 451.8 340 70.6
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 7.6e-125 451.1 331 71.6
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 1.3e-124 450.3 328 68.9
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 2.9e-124 449.1 330 68.8
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 2.4e-123 446.0 331 68.3
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 2.4e-123 446.0 330 67.6
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 5.4e-123 444.9 339 68.7
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 7.1e-123 444.5 323 67.8
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 1.6e-122 443.4 284 73.6
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 3.5e-122 442.2 284 77.1
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 3.5e-122 442.2 277 75.1
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.0e-121 440.7 336 67.3
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 3.9e-121 438.7 284 76.4
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 3.9e-121 438.7 284 76.4
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.1e-120 437.2 329 67.2
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 1.9e-120 436.4 284 76.1
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 1.9e-120 436.4 284 76.1
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 1.9e-120 436.4 336 65.8
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 3.3e-120 435.6 333 65.2
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 3.3e-120 435.6 309 68.9
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 7.3e-120 434.5 309 68.9
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 9.6e-120 434.1 334 66.5
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 3.6e-119 432.2 332 66.9
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 4.8e-119 431.8 299 70.2
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 4.8e-119 431.8 342 66.7
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 6.2e-119 431.4 335 68.4
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 8.1e-119 431.0 302 68.5
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 3.1e-118 429.1 302 68.2
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 2.0e-117 426.4 333 65.5
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 7.6e-117 424.5 344 63.4
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 7.6e-117 424.5 332 66.0
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 7.6e-117 424.5 335 67.5
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 8.4e-116 421.0 334 64.7
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 1.2e-114 417.2 329 69.0
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 2.7e-114 416.0 329 71.4
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 3.5e-114 415.6 307 70.4
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 4.6e-114 415.2 308 68.8
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 5.1e-113 411.8 261 73.2
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.1e-112 410.6 337 67.4
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.5e-112 410.2 313 68.1
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 1.5e-112 410.2 302 65.9
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 1.6e-111 406.8 320 65.3
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.8e-111 406.0 253 77.1
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 3.6e-111 405.6 348 60.6
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 4.8e-111 405.2 332 66.0
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 1.4e-110 403.7 332 66.0
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 1.8e-110 403.3 284 72.2
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 3.1e-110 402.5 329 64.1
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 4.0e-110 402.1 288 67.7
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 4.5e-109 398.7 321 62.6
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 1.7e-108 396.7 329 63.8
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 6.4e-108 394.8 222 83.8
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 8.4e-108 394.4 225 80.9
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 1.9e-107 393.3 225 81.3
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 9.3e-107 391.0 281 67.6
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 2.1e-106 389.8 342 63.7
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 2.7e-106 389.4 248 74.6
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 3.9e-105 385.6 225 78.7
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 3.9e-105 385.6 345 58.8
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 5.1e-105 385.2 331 65.0
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 1.5e-104 383.6 284 70.1
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 2.4e-102 376.3 331 63.4
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 6.0e-98 361.7 338 55.0
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 1.3e-97 360.5 342 56.1
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 2.1e-95 353.2 287 65.5
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 8.2e-95 351.3 347 55.9
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 1.4e-94 350.5 205 80.5
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 5.3e-94 348.6 337 60.5
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 1.4e-91 340.5 215 75.8
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 1.0e-89 334.3 365 52.3
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 6.7e-89 331.6 225 68.0
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 6.7e-89 331.6 225 68.0
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 4.8e-87 325.5 333 55.0
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 1.8e-86 323.6 257 59.1
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 1.5e-85 320.5 265 61.9
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 5.9e-85 318.5 330 54.8
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 7.2e-83 311.6 259 62.9
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 1.4e-81 307.4 487 41.3
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 1.1e-75 287.7 225 58.7
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 2.5e-75 286.6 171 78.4
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 1.4e-73 280.8 167 79.6
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 5.1e-73 278.9 279 51.3
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 3.5e-69 266.2 280 50.4
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 3.8e-68 262.7 224 61.2
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 5.5e-67 258.8 230 66.1
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.4e-62 243.4 220 57.7
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 1.0e-60 238.0 255 52.5
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.9e-60 236.5 213 60.1
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 6.8e-57 225.3 208 53.4
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 1.2e-56 224.6 117 84.6
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 5.9e-53 212.2 247 50.6
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 5.0e-52 209.1 189 60.8
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.8e-42 176.8 163 56.4
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 5.4e-38 162.5 97 77.3
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 2.6e-32 143.7 109 64.2
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 3.2e-30 136.7 175 38.9
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.3e-28 130.6 154 48.7
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 1.4e-25 121.3 61 86.9
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 4.9e-23 112.8 136 48.5
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 5.1e-20 102.8 104 53.8
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 8.6e-12 75.5 42 85.7
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.8e-10 70.5 68 58.8
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.8e-10 70.5 68 58.8
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 3.8e-07 60.1 162 34.0
CsaV3_5G018930 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.2e-06 57.0 44 61.4
A08p28900 Brassica napus HOM05D006408 ORTHO05D008038 7.1e-06 55.8 45 57.8


User provided reference genes

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