Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G112400 Glycine max HOM05D005614 ORTHO05D006759 2.6e-169 598.6 295 100.0
Glyma.04G250400 Glycine max HOM05D005614 ORTHO05D006759 9.3e-167 590.1 295 98.0
Phvul.009G124300 Phaseolus vulgaris HOM05D005614 ORTHO05D006759 6.7e-157 557.4 295 92.5
Lj1g0021555 Lotus japonicus HOM05D005614 ORTHO05D006759 5.0e-152 541.2 296 91.2
Ca_15193_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 4.1e-146 521.5 295 87.1
Medtr3g072430 Medicago truncatula HOM05D005614 ORTHO05D006759 4.7e-142 508.1 293 84.6
Lalb_Chr23g0270981 Lupinus albus HOM05D005614 ORTHO05D006759 2.3e-141 505.8 296 84.5
arahy.Tifrunner.gnm1.ann1.2VS3GS Arachis hypogaea HOM05D005614 ORTHO05D006759 2.8e-139 498.8 323 78.9
arahy.Tifrunner.gnm1.ann1.MKV7IN Arachis hypogaea HOM05D005614 ORTHO05D006759 4.8e-139 498.0 323 78.9
QL09p035347 Quercus lobata HOM05D005614 ORTHO05D006759 1.8e-125 453.0 295 75.9
CiPaw.05G223000 Carya illinoinensis HOM05D005614 ORTHO05D006759 1.5e-124 449.9 288 77.4
RcHm_v2.0_Chr6g0295621 Rosa chinensis HOM05D005614 ORTHO05D006759 1.4e-122 443.4 295 76.3
MD15G1351400 Malus domestica HOM05D005614 ORTHO05D006759 4.1e-122 441.8 295 75.6
Prupe.1G500100 Prunus persica HOM05D005614 ORTHO05D006759 2.3e-120 436.0 293 73.7
TWI79G0333 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 5.0e-120 434.9 296 73.6
PGR042G1492 Punica granatum HOM05D005614 ORTHO05D006759 6.6e-120 434.5 293 74.1
FvH4_2g26720 Fragaria vesca HOM05D005614 ORTHO05D006759 7.2e-119 431.0 295 73.9
CANSAT54G1242 Cannabis sativa HOM05D005614 ORTHO05D006759 1.6e-118 429.9 289 73.7
GSVIVG01008884001 Vitis vinifera HOM05D005614 ORTHO05D006759 3.6e-118 428.7 295 73.6
Gohir.A05G234600 Gossypium hirsutum HOM05D005614 ORTHO05D006759 4.7e-118 428.3 294 71.8
Atru.chr13.1437_Atru.chr13.1438 Acer truncatum HOM05D005614 ORTHO05D006759 8.0e-118 427.6 295 71.5
Gorai.009G245300 Gossypium raimondii HOM05D005614 ORTHO05D006759 2.3e-117 426.0 294 71.8
Thecc.08G123600 Theobroma cacao HOM05D005614 ORTHO05D006759 2.3e-117 426.0 294 71.8
Potri.005G176600 Populus trichocarpa HOM05D005614 ORTHO05D006759 2.6e-116 422.5 297 71.0
Cpa.g.sc36.54 Carica papaya HOM05D005614 ORTHO05D006759 1.3e-115 420.2 286 71.0
THA.LOC104806819 Tarenaya hassleriana HOM05D005614 ORTHO05D006759 2.2e-115 419.5 295 68.8
Sed0025863 Sechium edule HOM05D005614 ORTHO05D006759 2.8e-115 419.1 293 71.0
CARHR138110 Cardamine hirsuta HOM05D005614 ORTHO05D006759 6.3e-115 417.9 297 68.7
AT1G18340 Arabidopsis thaliana HOM05D005614 ORTHO05D006759 1.1e-114 417.2 299 68.6
AL1G30720 Arabidopsis lyrata HOM05D005614 ORTHO05D006759 2.4e-114 416.0 299 68.6
Carub.0001s1797 Capsella rubella HOM05D005614 ORTHO05D006759 2.4e-114 416.0 300 68.7
Thhalv10008316m.g Eutrema salsugineum HOM05D005614 ORTHO05D006759 3.1e-114 415.6 298 69.1
Ciclev10002002m.g Citrus clementina HOM05D005614 ORTHO05D006759 9.2e-114 414.1 296 69.9
CsaV3_2G009350 Cucumis sativus L. HOM05D005614 ORTHO05D006759 2.0e-113 412.9 275 75.3
Sp1g16310 Schrenkiella parvula HOM05D005614 ORTHO05D006759 3.5e-113 412.1 298 68.8
BcaB03g12976 Brassica carinata HOM05D005614 ORTHO05D006759 2.9e-112 409.1 299 68.6
BcaB07g31845 Brassica carinata HOM05D005614 ORTHO05D006759 5.0e-112 408.3 298 67.8
BolC8t49486H Brassica oleracea HOM05D005614 ORTHO05D006759 8.6e-112 407.5 301 67.8
Sc01g0001200 Simmondsia chinensis HOM05D005614 ORTHO05D006759 8.6e-112 407.5 309 68.3
FAN27G1664 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.9e-111 406.4 315 67.0
ClCG08G005590 Citrullus lanatus HOM05D005614 ORTHO05D006759 2.5e-111 406.0 330 64.2
FAN15G2492 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.5e-111 406.0 315 67.3
Aa31LG6G9300 Aethionema arabicum HOM05D005614 ORTHO05D006759 5.6e-111 404.8 297 68.0
TAR628G1424 Trochodendron aralioides HOM05D005614 ORTHO05D006759 2.8e-110 402.5 297 69.7
A06p14370 Brassica napus HOM05D005614 ORTHO05D006759 4.7e-110 401.7 298 66.8
PSO782G2082 Papaver somniferum HOM05D005614 ORTHO05D006759 8.0e-110 401.0 301 67.8
BraA06t24565Z Brassica rapa HOM05D005614 ORTHO05D006759 1.0e-109 400.6 298 66.8
C05p16610 Brassica napus HOM05D005614 ORTHO05D006759 1.4e-109 400.2 298 66.4
CARHR018930 Cardamine hirsuta HOM05D005614 ORTHO05D006759 1.4e-109 400.2 295 67.5
PSO170G2981 Papaver somniferum HOM05D005614 ORTHO05D006759 1.4e-109 400.2 301 67.1
Sed0022578 Sechium edule HOM05D005614 ORTHO05D006759 2.3e-109 399.4 305 66.9
FAN20G0890 Fragaria x ananassa HOM05D005614 ORTHO05D006759 3.1e-109 399.1 268 74.3
BraA08t34975Z Brassica rapa HOM05D005614 ORTHO05D006759 4.0e-109 398.7 295 67.5
BolC5t30360H Brassica oleracea HOM05D005614 ORTHO05D006759 5.2e-109 398.3 298 66.4
C08p18540 Brassica napus HOM05D005614 ORTHO05D006759 1.2e-108 397.1 292 68.2
Dinv07241 Davidia involucrata HOM05D005614 ORTHO05D006759 1.5e-108 396.7 295 68.5
A08p30430 Brassica napus HOM05D005614 ORTHO05D006759 4.4e-108 395.2 292 67.5
BcaC05g25728 Brassica carinata HOM05D005614 ORTHO05D006759 7.5e-108 394.4 300 66.0
HanXRQChr02g0053121 Helianthus annuus HOM05D005614 ORTHO05D006759 3.2e-106 389.0 296 66.9
ECA246G0276 Erigeron canadensis HOM05D005614 ORTHO05D006759 2.7e-105 386.0 296 67.9
HanXRQChr16g0532671 Helianthus annuus HOM05D005614 ORTHO05D006759 2.7e-105 386.0 296 66.9
Actinidia03480 Actinidia chinensis HOM05D005614 ORTHO05D006759 3.5e-105 385.6 296 66.9
Aqoxy7G02121 Aquilegia oxysepala HOM05D005614 ORTHO05D006759 3.5e-105 385.6 302 65.9
Cc04_g13870 Coffea canephora HOM05D005614 ORTHO05D006759 1.3e-104 383.6 293 66.6
CSS0036035 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 5.0e-104 381.7 297 65.7
RhsimUnG0093400 Rhododendron simsii HOM05D005614 ORTHO05D006759 2.5e-103 379.4 297 65.7
CAN.G628.77 Capsicum annuum HOM05D005614 ORTHO05D006759 9.5e-103 377.5 297 66.3
DCAR_017415 Daucus carota HOM05D005614 ORTHO05D006759 2.1e-102 376.3 297 65.7
PGSC0003DMG400026996 Solanum tuberosum HOM05D005614 ORTHO05D006759 2.1e-102 376.3 296 66.2
SalBow3G0912 Salvia bowleyana HOM05D005614 ORTHO05D006759 3.6e-102 375.6 298 65.8
HPP92_013333 Vanilla planifolia HOM05D005614 ORTHO05D006759 3.6e-102 375.6 301 62.8
Solyc06g071450.4 Solanum lycopersicum HOM05D005614 ORTHO05D006759 4.7e-102 375.2 296 65.9
COL.COLO4_35944 Corchorus olitorius HOM05D005614 ORTHO05D006759 4.0e-101 372.1 255 72.2
Migut.D01926 Erythranthe guttata HOM05D005614 ORTHO05D006759 5.2e-101 371.7 290 65.9
Sopen06g027730 Solanum pennellii HOM05D005614 ORTHO05D006759 6.8e-101 371.3 296 65.2
CSS0020697 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 2.0e-100 369.8 298 64.4
Oeu024691.1 Olea europaea HOM05D005614 ORTHO05D006759 7.5e-100 367.9 281 67.6
Nitab4.5_0000866g0090 Nicotiana tabacum HOM05D005614 ORTHO05D006759 1.7e-99 366.7 317 61.8
Os02g0125800 Oryza sativa ssp. japonica HOM05D005614 ORTHO05D006759 1.7e-99 366.7 290 61.0
Rhsim11G0047100 Rhododendron simsii HOM05D005614 ORTHO05D006759 7.0e-98 361.3 282 65.6
Duzib041G0760 Durio zibethinus HOM05D005614 ORTHO05D006759 3.0e-96 355.9 294 62.6
Zm00001eb208710 Zea mays HOM05D005614 ORTHO05D006759 1.1e-95 354.0 296 59.5
ATR0684G165 Amborella trichopoda HOM05D005614 ORTHO05D006759 1.9e-95 353.2 278 64.7
vmacro14329 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 1.9e-95 353.2 286 64.7
Manes.02G162200 Manihot esculenta HOM05D005614 ORTHO05D006759 5.6e-95 351.7 243 72.0
Nitab4.5_0001017g0060 Nicotiana tabacum HOM05D005614 ORTHO05D006759 1.6e-94 350.1 298 62.4
Duzib093G1836 Durio zibethinus HOM05D005614 ORTHO05D006759 5.1e-88 328.6 321 57.3
Gohir.D05G236900 Gossypium hirsutum HOM05D005614 ORTHO05D006759 5.2e-85 318.5 209 73.7
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.5e-84 317.0 250 64.4
EL10Ac1g01047 Beta vulgaris HOM05D005614 ORTHO05D006759 4.4e-84 315.5 305 56.4
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 1.7e-83 313.5 248 65.3
MELO3C008774.2 Cucumis melo HOM05D005614 ORTHO05D006759 1.0e-80 304.3 209 71.8
Nn8g39974 Nelumbo nucifera HOM05D005614 ORTHO05D006759 1.0e-80 304.3 275 60.7
Hund27024 Selenicereus undatus HOM05D005614 ORTHO05D006759 1.0e-80 304.3 294 59.2
Lsat_1_v5_gn_3_69700 Lactuca sativa HOM05D005614 ORTHO05D006759 3.9e-80 302.4 243 66.7
Mapoly0044s0012 Marchantia polymorpha HOM05D005614 ORTHO05D006759 5.6e-79 298.5 300 52.3
SalBow7G1071 Salvia bowleyana HOM05D005614 ORTHO05D006759 2.1e-78 296.6 246 64.2
TPR.G24041 Trifolium pratense HOM05D005614 ORTHO05D006759 4.0e-77 292.4 177 82.5
Pp3c2_3680 Physcomitrium patens HOM05D005614 ORTHO05D006759 6.9e-77 291.6 303 50.2
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 7.6e-76 288.1 222 64.9
Eucgr.G01112 Eucalyptus grandis HOM05D005614 ORTHO05D006759 3.2e-74 282.7 217 66.4
Psat5g132360 Pisum sativum HOM05D005614 ORTHO05D006759 3.6e-70 269.2 163 82.2
FAN24G3468 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.4e-69 266.5 383 46.0
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 2.2e-67 260.0 250 56.4
Sabra05G0133300 Salix brachista HOM05D005614 ORTHO05D006759 7.1e-66 255.0 313 48.9
SGA_v2.0_scaffold31G12915 Striga asiatica HOM05D005614 ORTHO05D006759 1.6e-65 253.8 217 63.6
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 3.5e-65 252.7 310 46.1
MBI03_g33030_MAGBIO Magnolia biondii HOM05D005614 ORTHO05D006759 2.5e-63 246.5 254 55.9
Haze_00457 Corylus avellana HOM05D005614 ORTHO05D006759 1.2e-60 237.7 175 70.9
Nitab4.5_0000003g0570 Nicotiana tabacum HOM05D005614 ORTHO05D006759 1.5e-60 237.3 240 56.2
Oeu022164.1 Olea europaea HOM05D005614 ORTHO05D006759 2.6e-60 236.5 149 73.8
TPR.G40310 Trifolium pratense HOM05D001808 ORTHO05D001747 8.2e-54 214.9 111 89.2
CDE06G0499 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 1.4e-53 214.2 187 60.4
Peaxi162Scf00689g00225 Petunia axillaris HOM05D005614 ORTHO05D006759 5.3e-53 212.2 222 55.4
Psat5g132400 Pisum sativum HOM05D005614 ORTHO05D006759 1.2e-52 211.1 122 83.6
vmacro00825 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 1.3e-51 207.6 235 54.0
TWI75G0111 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 2.5e-50 203.4 202 57.9
CDE12G0551 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 7.2e-42 175.3 129 65.9
Cre03.g172050 Chlamydomonas reinhardtii HOM05D005614 ORTHO05D006759 3.7e-38 162.9 285 36.8
Lj4A622G15 Lonicera japonica HOM05D005614 ORTHO05D006759 1.1e-37 161.4 95 83.2
Ca_31116_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 6.5e-35 152.1 94 83.0
SEGI_11087 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 1.6e-33 147.5 96 71.9
Cfa025530 Carpinus fangiana HOM05D005614 ORTHO05D006759 2.7e-33 146.7 338 33.1
Haze_00458 Corylus avellana HOM05D005614 ORTHO05D006759 2.6e-31 140.2 80 80.0
SMO358G0086 Selaginella moellendorffii HOM05D005614 ORTHO05D006759 5.9e-28 129.0 159 47.2
QL09p036498 Quercus lobata HOM05D005614 ORTHO05D006759 6.5e-27 125.6 70 84.3
SEGI_10746 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 6.5e-27 125.6 154 52.6
Lj4A622G16 Lonicera japonica HOM05D005614 ORTHO05D006759 2.7e-25 120.2 124 54.8
MCO01G384 Micromonas commoda HOM05D005614 ORTHO05D006759 6.1e-25 119.0 246 32.9
PRCOL_00005856 Prasinoderma coloniale HOM05D005614 ORTHO05D006759 8.0e-25 118.6 133 45.9
TPR.G32 Trifolium pratense HOM05D005614 ORTHO05D006759 2.7e-12 77.0 31 100.0
CAN.G964.16 Capsicum annuum HOM05D005614 ORTHO05D006759 6.5e-11 72.4 103 44.7
RhsimUnG0102200 Rhododendron simsii HOM05D005614 ORTHO05D006759 2.7e-09 67.0 92 45.7
Rhsim03G0117800 Rhododendron simsii HOM05D005614 ORTHO05D006759 8.8e-08 62.0 55 54.5
Rhsim02G0185400 Rhododendron simsii HOM05D005614 ORTHO05D006759 2.0e-07 60.8 88 44.3


User provided reference genes

Program Settings