Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G228300 Glycine max HOM05D001273 ORTHO05D023773 2.8e-138 495.4 262 100.0
Glyma.08G035200 Glycine max HOM05D001273 ORTHO05D000023 3.3e-107 392.1 252 86.1
Phvul.002G310400 Phaseolus vulgaris HOM05D001273 ORTHO05D000023 6.5e-79 298.1 252 70.2
VMungo0251G1268 Vigna mungo HOM05D001273 ORTHO05D000023 1.8e-76 290.0 252 68.3
Lj4g0007510 Lotus japonicus HOM05D001273 ORTHO05D000023 1.3e-66 257.3 275 60.7
Medtr8g102850 Medicago truncatula HOM05D001273 ORTHO05D000023 2.5e-62 243.0 257 58.0
TPR.G23497 Trifolium pratense HOM05D001273 ORTHO05D000023 3.0e-60 236.1 265 58.9
Lalb_Chr09g0331391 Lupinus albus HOM05D001273 ORTHO05D000023 3.1e-57 226.1 267 54.7
arahy.Tifrunner.gnm1.ann1.1EV8X8 Arachis hypogaea HOM05D001273 ORTHO05D000023 1.5e-51 207.2 257 52.5
arahy.Tifrunner.gnm1.ann1.CYHU50 Arachis hypogaea HOM05D001273 ORTHO05D000023 8.3e-50 201.4 256 51.6
Psat7g015680 Pisum sativum HOM05D001273 ORTHO05D000023 5.0e-39 165.6 250 48.4
arahy.Tifrunner.gnm1.ann1.KPXK74 Arachis hypogaea HOM05D001273 ORTHO05D000023 4.7e-29 132.5 265 40.4
arahy.Tifrunner.gnm1.ann1.E4JC76 Arachis hypogaea HOM05D001273 ORTHO05D000023 2.3e-28 130.2 265 41.1
arahy.Tifrunner.gnm1.ann1.T8DWUL Arachis hypogaea HOM05D001273 ORTHO05D000023 2.6e-27 126.7 264 39.4
arahy.Tifrunner.gnm1.ann1.60E57G Arachis hypogaea HOM05D001273 ORTHO05D023773 4.4e-27 125.9 161 49.7
Lj2g0012244 Lotus japonicus HOM05D001273 ORTHO05D000023 2.9e-26 123.2 180 50.6
Lalb_Chr14g0371751 Lupinus albus HOM05D001273 ORTHO05D000023 1.2e-24 117.9 172 47.7
Gohir.A06G065800 Gossypium hirsutum HOM05D001273 ORTHO05D000023 7.8e-24 115.2 200 41.5
Thecc.09G103900 Theobroma cacao HOM05D001273 ORTHO05D000023 8.6e-23 111.7 200 41.0
Duzib168G1568 Durio zibethinus HOM05D001273 ORTHO05D000023 2.5e-22 110.2 223 40.4
Gorai.010G075200 Gossypium raimondii HOM05D001273 ORTHO05D000023 1.6e-21 107.5 200 39.5
Gohir.D06G064400 Gossypium hirsutum HOM05D001273 ORTHO05D000023 4.7e-21 105.9 200 40.5
Prupe.7G223600 Prunus persica HOM05D001273 ORTHO05D000023 6.2e-21 105.5 198 42.9
Eucgr.F01559 Eucalyptus grandis HOM05D001273 ORTHO05D000023 1.1e-20 104.8 164 45.1
Cfa003211 Carpinus fangiana HOM05D001273 ORTHO05D000023 1.8e-20 104.0 188 42.0
Dinv41652 Davidia involucrata HOM05D001273 ORTHO05D000023 5.2e-20 102.4 201 40.3
Glyma.01G147400 Glycine max HOM05D001273 ORTHO05D000023 6.8e-20 102.1 147 49.7
CiPaw.03G227000 Carya illinoinensis HOM05D001273 ORTHO05D000023 3.4e-19 99.8 194 41.8
QL02p042453 Quercus lobata HOM05D001273 ORTHO05D000023 3.4e-19 99.8 219 38.4
RcHm_v2.0_Chr2g0091431 Rosa chinensis HOM05D001273 ORTHO05D000023 3.4e-19 99.8 206 38.8
MBI04_g27066_MAGBIO Magnolia biondii HOM05D001273 ORTHO05D000023 4.4e-19 99.4 122 47.5
TAR624G0236 Trochodendron aralioides HOM05D001273 ORTHO05D000023 5.8e-19 99.0 219 38.8
Oeu053754.1 Olea europaea HOM05D001273 ORTHO05D000023 1.3e-18 97.8 196 39.8
Haze_25797 Corylus avellana HOM05D001273 ORTHO05D000023 2.9e-18 96.7 182 40.7
QL11p047070 Quercus lobata HOM05D001273 ORTHO05D023773 4.9e-18 95.9 193 39.9
CANSAT56G4419 Cannabis sativa HOM05D001273 ORTHO05D000023 8.4e-18 95.1 284 32.7
MD02G1059500 Malus domestica HOM05D001273 ORTHO05D000023 2.4e-17 93.6 226 36.7
MD15G1193500 Malus domestica HOM05D001273 ORTHO05D000023 2.4e-17 93.6 249 34.1
Hund09234 Selenicereus undatus HOM05D001273 ORTHO05D000023 5.4e-17 92.4 178 41.0
Cpa.g.sc40.34 Carica papaya HOM05D001273 ORTHO05D000023 1.2e-16 91.3 134 46.3
GSVIVG01015331001 Vitis vinifera HOM05D001273 ORTHO05D000023 2.1e-16 90.5 128 45.3
COL.COLO4_34785 Corchorus olitorius HOM05D001273 ORTHO05D000023 4.6e-16 89.4 244 35.2
Hma1.2p1_0945F.1_g240220 Hydrangea macrophylla HOM05D001273 ORTHO05D000023 6.0e-16 89.0 160 40.6
PGR142G4117 Punica granatum HOM05D001273 ORTHO05D000023 1.3e-15 87.8 193 34.7
EL10Ac8g18963 Beta vulgaris HOM05D001273 ORTHO05D000023 1.7e-15 87.4 172 39.5
MELO3C004577.2 Cucumis melo HOM05D001273 ORTHO05D000023 1.7e-15 87.4 115 50.4
Peaxi162Scf00539g00006 Petunia axillaris HOM05D001273 ORTHO05D000023 3.9e-15 86.3 133 43.6
Manes.16G111400 Manihot esculenta HOM05D001273 ORTHO05D000023 5.1e-15 85.9 162 40.7
FAN28G1921 Fragaria x ananassa HOM05D001273 ORTHO05D000023 6.6e-15 85.5 136 43.4
Potri.006G163100 Populus trichocarpa HOM05D001273 ORTHO05D000023 1.1e-14 84.7 207 37.7
Actinidia20411 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.5e-14 84.3 232 33.2
CSS0003269 Camellia sinensis var. sinensis HOM05D001273 ORTHO05D000023 1.5e-14 84.3 231 34.2
Aqoxy7G03909 Aquilegia oxysepala HOM05D001273 ORTHO05D000023 1.9e-14 84.0 178 37.6
ECA240G3615 Erigeron canadensis HOM05D001273 ORTHO05D000023 2.5e-14 83.6 146 37.7
Sabra06G0125500 Salix brachista HOM05D001273 ORTHO05D000023 3.3e-14 83.2 210 36.7
FvH4_1g05780 Fragaria vesca HOM05D001273 ORTHO05D000023 4.3e-14 82.8 136 42.6
FAN19G2994 Fragaria x ananassa HOM05D001273 ORTHO05D000023 4.3e-14 82.8 136 42.6
Sc08g0007820 Simmondsia chinensis HOM05D001273 ORTHO05D000023 9.6e-14 81.6 239 35.1
SalBow8G2593 Salvia bowleyana HOM05D001273 ORTHO05D000023 1.6e-13 80.9 125 41.6
SGA_v2.0_scaffold19G08759 Striga asiatica HOM05D001273 ORTHO05D000023 1.6e-13 80.9 130 43.8
Eucgr.F00668 Eucalyptus grandis HOM05D001273 ORTHO05D000023 2.1e-13 80.5 162 40.7
HanXRQChr09g0238911 Helianthus annuus HOM05D001273 ORTHO05D000023 2.1e-13 80.5 119 47.1
CSS0020653 Camellia sinensis var. sinensis HOM05D001273 ORTHO05D000023 2.8e-13 80.1 114 46.5
Sed0022257 Sechium edule HOM05D001273 ORTHO05D000023 2.8e-13 80.1 120 45.0
CAN.G1812.8 Capsicum annuum HOM05D001273 ORTHO05D000023 3.6e-13 79.7 213 34.3
Rhsim05G0042000 Rhododendron simsii HOM05D001273 ORTHO05D000023 3.6e-13 79.7 240 31.2
PGSC0003DMG400027434 Solanum tuberosum HOM05D001273 ORTHO05D000023 1.1e-12 78.2 214 33.2
ClCG11G002280 Citrullus lanatus HOM05D001273 ORTHO05D000023 1.4e-12 77.8 193 34.2
CsaV3_2G002040 Cucumis sativus L. HOM05D001273 ORTHO05D000023 3.1e-12 76.6 227 34.4
Dinv36704 Davidia involucrata HOM05D001273 ORTHO05D023773 3.1e-12 76.6 120 46.7
AUR62028324 Chenopodium quinoa HOM05D001273 ORTHO05D000023 6.9e-12 75.5 217 32.7
Thhalv10001924m.g Eutrema salsugineum HOM05D001273 ORTHO05D000023 6.9e-12 75.5 213 31.0
Nitab4.5_0000012g0190 Nicotiana tabacum HOM05D001273 ORTHO05D000023 6.9e-12 75.5 189 36.0
THA.LOC104804012 Tarenaya hassleriana HOM05D001273 ORTHO05D000023 6.9e-12 75.5 128 43.8
Migut.K00519 Erythranthe guttata HOM05D001273 ORTHO05D000023 9.0e-12 75.1 140 39.3
Nitab4.5_0000066g0210 Nicotiana tabacum HOM05D001273 ORTHO05D000023 9.0e-12 75.1 189 36.0
Phvul.003G026601 Phaseolus vulgaris HOM05D001273 ORTHO05D000023 9.0e-12 75.1 83 55.4
PSO210G5770 Papaver somniferum HOM05D001273 ORTHO05D000023 1.2e-11 74.7 124 41.9
TWI63G0391 Tripterygium wilfordii HOM05D001273 ORTHO05D000023 1.5e-11 74.3 235 34.0
Sopen05g015000 Solanum pennellii HOM05D001273 ORTHO05D000023 2.6e-11 73.6 134 41.0
vmacro10866 Vaccinium macrocarpon HOM05D001273 ORTHO05D000023 3.4e-11 73.2 240 30.0
Lsat_1_v5_gn_7_41120 Lactuca sativa HOM05D001273 ORTHO05D000023 4.4e-11 72.8 118 43.2
CARHR110500 Cardamine hirsuta HOM05D001273 ORTHO05D000023 5.8e-11 72.4 224 29.9
Aa31LG8G16960 Aethionema arabicum HOM05D001273 ORTHO05D000023 1.3e-10 71.2 153 34.0
BcaB03g16793 Brassica carinata HOM05D001273 ORTHO05D000023 1.7e-10 70.9 239 32.6
Solyc05g018240.4 Solanum lycopersicum HOM05D001273 ORTHO05D000023 1.7e-10 70.9 232 31.5
DCAR_024698 Daucus carota HOM05D001273 ORTHO05D000023 4.9e-10 69.3 132 35.6
PSO210G6932 Papaver somniferum HOM05D001273 ORTHO05D000023 4.9e-10 69.3 119 42.9
Atru.chr7.1426 Acer truncatum HOM05D001273 ORTHO05D000023 1.4e-09 67.8 101 45.5
Cc06_g10200 Coffea canephora HOM05D001273 ORTHO05D000023 2.4e-09 67.0 250 32.0
HPP92_024166 Vanilla planifolia HOM05D001273 ORTHO05D000023 3.2e-09 66.6 169 32.0
Ciclev10010654m.g Citrus clementina HOM05D001273 ORTHO05D000023 4.2e-09 66.2 148 36.5
C07p01140 Brassica napus HOM05D001273 ORTHO05D000023 9.3e-09 65.1 241 28.6
Carub.0003s3429 Capsella rubella HOM05D001273 ORTHO05D000023 9.3e-09 65.1 196 31.1
BcaC06g36677 Brassica carinata HOM05D001273 ORTHO05D000023 1.6e-08 64.3 243 30.0
BolC7t40559H Brassica oleracea HOM05D001273 ORTHO05D000023 1.6e-08 64.3 243 30.0
AT2G20020 Arabidopsis thaliana HOM05D001273 ORTHO05D000023 3.5e-08 63.2 247 29.1
A07p00620 Brassica napus HOM05D001273 ORTHO05D000023 6.0e-08 62.4 242 29.3
Sp3g33340 Schrenkiella parvula HOM05D001273 ORTHO05D000023 7.8e-08 62.0 253 29.2
AL3G48070 Arabidopsis lyrata HOM05D001273 ORTHO05D000023 1.0e-07 61.6 180 29.4
unitig_0.g2550 Utricularia gibba HOM05D001273 ORTHO05D023773 2.3e-07 60.5 164 32.9
Os01g0495900 Oryza sativa ssp. japonica HOM05D001273 ORTHO05D000023 3.0e-07 60.1 130 39.2
SEGI_33533 Sequoiadendron giganteum HOM05D001273 ORTHO05D024654 8.7e-07 58.5 113 34.5
Lj4A407G8 Lonicera japonica HOM05D001273 ORTHO05D000023 1.1e-06 58.2 71 49.3
BraA07t27858Z Brassica rapa HOM05D001273 ORTHO05D000023 1.5e-06 57.8 235 27.7
Ah.09g228900 Amaranthus hybridus HOM05D001273 ORTHO05D000023 3.3e-06 56.6 174 32.8
VMungo0331G0122 Vigna mungo HOM05D001273 ORTHO05D000023 3.3e-06 56.6 89 42.7
Zm00001eb306430 Zea mays HOM05D001273 ORTHO05D000023 7.3e-06 55.5 129 34.1


User provided reference genes

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