Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 2.3e-287 991.5 487 100.0
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 4.0e-239 831.2 487 84.4
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 6.2e-216 754.2 479 76.8
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 5.2e-215 751.1 479 77.5
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 1.5e-214 749.6 489 76.7
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 1.1e-212 743.4 477 76.7
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 2.1e-211 739.2 479 76.0
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 6.0e-211 737.6 477 76.1
Lalb_Chr08g0236931 Lupinus albus HOM05D006543 ORTHO05D008308 1.5e-206 723.0 476 76.1
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 5.6e-193 677.9 479 69.9
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 1.1e-185 653.7 473 68.3
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 1.9e-185 652.9 475 68.8
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 2.8e-184 649.0 472 68.4
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 1.8e-183 646.4 474 68.1
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 9.0e-183 644.0 478 68.4
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 1.5e-182 643.3 474 67.9
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 7.6e-182 641.0 475 68.6
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 7.6e-182 641.0 478 66.9
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 9.9e-182 640.6 475 66.9
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 8.4e-181 637.5 477 67.1
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 1.1e-180 637.1 479 68.1
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 1.1e-180 637.1 476 66.2
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 2.4e-180 636.0 480 67.3
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 1.1e-177 627.1 483 66.9
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 2.5e-177 625.9 482 64.9
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 3.3e-177 625.5 481 64.2
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 7.4e-177 624.4 476 65.8
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 7.4e-177 624.4 477 65.6
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 7.4e-177 624.4 489 64.0
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 2.8e-176 622.5 477 65.6
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 2.8e-176 622.5 476 66.0
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 3.7e-176 622.1 481 65.7
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 6.2e-176 621.3 477 64.6
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 6.9e-175 617.8 479 65.3
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 2.0e-174 616.3 476 64.3
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 2.0e-174 616.3 474 64.1
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 3.4e-174 615.5 474 64.3
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 5.8e-174 614.8 472 64.8
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 7.6e-174 614.4 474 64.3
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 2.2e-173 612.8 477 64.6
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 2.2e-173 612.8 470 65.1
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 1.1e-172 610.5 492 62.8
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 2.1e-171 606.3 472 62.9
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 2.1e-171 606.3 472 63.3
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 2.7e-171 605.9 471 63.1
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 3.0e-170 602.4 477 64.6
MSTRG.11294 Avicennia marina HOM05D006543 ORTHO05D008308 5.1e-170 601.7 476 62.2
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 5.1e-170 601.7 476 64.1
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 6.7e-170 601.3 482 61.4
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 1.9e-169 599.7 483 62.5
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 2.8e-168 595.9 486 60.3
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 2.8e-168 595.9 482 61.8
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 8.2e-168 594.3 475 61.7
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 1.8e-167 593.2 478 62.1
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 2.4e-167 592.8 483 62.1
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 9.0e-167 590.9 486 60.3
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 1.2e-166 590.5 485 60.8
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 4.5e-166 588.6 479 61.2
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 5.9e-166 588.2 487 60.6
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 1.0e-165 587.4 485 61.4
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 1.3e-165 587.0 475 61.7
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 1.3e-165 587.0 489 62.0
VMungo1309G1872 Vigna mungo HOM05D006543 ORTHO05D008308 1.7e-165 586.6 332 88.3
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 2.9e-165 585.9 485 60.0
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 3.8e-165 585.5 485 60.6
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 6.5e-165 584.7 468 61.1
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 8.5e-165 584.3 485 60.6
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 1.4e-164 583.6 445 64.0
EL10Ac7g18072 Beta vulgaris HOM05D006543 ORTHO05D008308 1.9e-164 583.2 475 62.7
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 1.9e-164 583.2 485 60.4
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 3.6e-163 578.9 488 60.2
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 6.1e-163 578.2 487 60.0
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 7.9e-163 577.8 487 60.0
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 5.1e-162 575.1 493 60.6
Ca_16091_v3 Cicer arietinum L. HOM05D006543 ORTHO05D008308 1.4e-159 567.0 340 82.9
Sc04g0000970 Simmondsia chinensis HOM05D006543 ORTHO05D008308 1.7e-157 560.1 474 60.8
Os12g0270100 Oryza sativa ssp. japonica HOM05D006543 ORTHO05D008308 8.5e-157 557.8 479 58.7
Zm00001eb001600 Zea mays HOM05D006543 ORTHO05D008308 2.5e-156 556.2 465 59.1
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 1.4e-151 540.4 478 58.2
SGA_v2.0_scaffold338G49246 Striga asiatica HOM05D006543 ORTHO05D008308 2.0e-150 536.6 439 61.3
Ah.15g095320 Amaranthus hybridus HOM05D006543 ORTHO05D008308 1.9e-148 530.0 475 57.3
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 1.1e-145 520.8 375 66.4
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 3.3e-145 519.2 479 55.7
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 8.2e-144 514.6 497 55.3
unitig_22.g5878 Utricularia gibba HOM05D006543 ORTHO05D008308 1.1e-135 487.6 393 59.0
SEGI_06622 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 8.5e-133 478.0 497 48.7
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 3.2e-132 476.1 381 62.5
Glyma.06G173133 Glycine max HOM05D006543 ORTHO05D008308 7.2e-132 474.9 254 91.7
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 1.3e-128 464.2 316 70.6
Pp3c13_23570 Physcomitrium patens HOM05D006543 ORTHO05D008308 7.0e-119 431.8 439 48.1
Mapoly0005s0190 Marchantia polymorpha HOM05D006543 ORTHO05D008308 2.8e-115 419.9 476 45.4
SMO364G0036 Selaginella moellendorffii HOM05D006543 ORTHO05D008308 8.0e-107 391.7 431 47.1
CBR_g58805 Chara braunii HOM05D006543 ORTHO05D008308 2.3e-98 363.6 399 45.1
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 5.8e-97 359.0 252 70.2
PRCOL_00001606 Prasinoderma coloniale HOM05D006543 ORTHO05D008308 1.3e-96 357.8 434 41.7
Cre03.g171461 Chlamydomonas reinhardtii HOM05D006543 ORTHO05D008308 1.4e-95 354.4 513 38.2
ATR0733G153 Amborella trichopoda HOM05D006543 ORTHO05D008308 1.5e-92 344.4 361 49.3
Glyma.06G173067 Glycine max HOM05D006543 ORTHO05D008308 2.5e-92 343.6 184 89.1
CARHR277150 Cardamine hirsuta HOM05D006543 ORTHO05D008308 4.3e-92 342.8 279 63.1
BcaB04g19911 Brassica carinata HOM05D006543 ORTHO05D008308 1.1e-90 338.2 274 63.1
AagrBONN_evm.TU.Sc2ySwM_344.2040 Anthoceros agrestis HOM05D006543 ORTHO05D008308 4.1e-87 326.2 402 40.8
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 1.2e-86 324.7 296 58.4
MCO01G029 Micromonas commoda HOM05D006543 ORTHO05D008308 1.2e-86 324.7 449 41.4
Nn3g16581 Nelumbo nucifera HOM05D006543 ORTHO05D008308 1.7e-85 320.9 263 60.8
vmacro16659 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 3.4e-81 306.6 316 52.8
Actinidia36787 Actinidia chinensis HOM05D006543 ORTHO05D008308 5.6e-68 262.7 251 55.0
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 7.4e-68 262.3 207 59.4
MD06G1157200 Malus domestica HOM05D006543 ORTHO05D008308 2.2e-64 250.8 209 61.7
BcaB01g05367 Brassica carinata HOM05D006543 ORTHO05D008308 1.8e-58 231.1 236 53.4
SEGI_28812 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 1.7e-56 224.6 212 51.9
Oeu045471.1 Olea europaea HOM05D006543 ORTHO05D008308 7.4e-52 209.1 125 76.0
Oeu037566.1 Olea europaea HOM05D006543 ORTHO05D008308 9.0e-50 202.2 118 78.8
CAN.G352.9 Capsicum annuum HOM05D006543 ORTHO05D003127 2.1e-38 164.5 119 66.4
FvH4_5g07400 Fragaria vesca HOM05D006543 ORTHO05D008308 6.7e-29 132.9 110 61.8
CAN.G352.8 Capsicum annuum HOM05D006543 ORTHO05D008308 5.9e-25 119.8 98 64.3
MD06G1156000 Malus domestica HOM05D006543 ORTHO05D008308 1.0e-24 119.0 115 51.3
Cfa009975 Carpinus fangiana HOM05D006543 ORTHO05D008308 5.9e-09 66.6 44 68.2
BcaNung00695 Brassica carinata HOM05D000342 ORTHO05D000217 1.3e-08 65.5 33 87.9
MD06G1152300 Malus domestica HOM05D006543 ORTHO05D008308 3.8e-08 63.9 208 27.4
MD06G1154400 Malus domestica HOM05D006543 ORTHO05D008308 3.8e-08 63.9 208 27.9
MD06G1157100 Malus domestica HOM05D006543 ORTHO05D008308 9.5e-07 59.3 70 48.6


User provided reference genes

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