Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 5.0e-185 651.0 329 100.0
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 2.0e-157 559.3 330 89.7
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 1.2e-151 540.0 336 83.6
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 2.4e-147 525.8 335 81.5
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 8.3e-132 474.2 337 73.6
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 3.9e-129 465.3 336 70.5
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 5.0e-129 464.9 326 73.9
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 3.3e-128 462.2 329 73.3
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 4.3e-128 461.8 338 69.5
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 1.6e-127 459.9 311 73.3
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.6e-127 458.8 333 70.3
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 3.6e-127 458.8 334 71.9
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 3.6e-127 458.8 332 70.2
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 4.7e-127 458.4 313 73.2
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 8.1e-127 457.6 331 69.2
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 1.1e-126 457.2 331 68.3
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 1.4e-126 456.8 323 71.2
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.8e-126 456.4 329 68.1
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 2.3e-126 456.1 280 76.4
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 6.8e-126 454.5 330 71.8
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 8.9e-126 454.1 331 69.8
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 1.2e-125 453.8 323 73.4
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 1.5e-125 453.4 322 72.7
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 3.4e-125 452.2 331 68.9
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 5.8e-125 451.4 280 75.7
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 7.5e-125 451.1 280 78.6
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 1.3e-124 450.3 333 70.3
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 1.4e-123 446.8 278 76.3
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 5.4e-123 444.9 329 66.9
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 7.1e-123 444.5 287 76.3
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 7.1e-123 444.5 287 76.3
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 9.2e-123 444.1 280 74.6
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 9.2e-123 444.1 335 69.3
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 1.6e-122 443.4 305 70.2
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 2.1e-122 443.0 329 67.2
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 2.7e-122 442.6 309 68.0
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 4.6e-122 441.8 325 70.5
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 4.6e-122 441.8 325 70.5
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 3.0e-121 439.1 301 70.4
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 3.9e-121 438.7 299 71.2
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 5.1e-121 438.3 317 68.1
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 1.1e-120 437.2 331 68.0
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.9e-120 436.4 323 69.3
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 2.5e-120 436.0 332 66.0
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 5.6e-120 434.9 326 66.9
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 1.2e-119 433.7 324 67.0
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 4.7e-119 431.8 330 66.1
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.1e-118 430.6 323 68.7
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 1.1e-118 430.6 332 66.3
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.4e-118 429.5 323 69.0
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 8.9e-118 427.6 315 67.3
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 3.4e-117 425.6 334 67.7
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.1e-115 420.6 283 71.0
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 2.4e-115 419.5 296 70.6
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 2.4e-115 419.5 308 70.8
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 7.1e-115 417.9 324 65.1
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 1.2e-114 417.2 262 74.0
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 3.5e-114 415.6 253 77.9
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 4.6e-114 415.2 277 72.2
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 6.0e-114 414.8 295 70.2
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 1.0e-113 414.1 316 71.2
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 1.7e-113 413.3 278 71.2
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 5.1e-113 411.8 285 71.6
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 8.7e-113 411.0 326 67.8
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 5.6e-112 408.3 321 65.7
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 7.3e-112 407.9 325 67.1
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 3.6e-111 405.6 277 70.8
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 6.9e-110 401.4 225 82.2
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 6.9e-110 401.4 221 85.1
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 2.0e-109 399.8 227 79.7
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 2.6e-109 399.4 300 67.3
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 1.7e-108 396.7 225 81.3
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 2.2e-108 396.4 271 69.7
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 2.2e-108 396.4 227 80.6
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 2.2e-108 396.4 249 75.1
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 3.8e-108 395.6 343 58.9
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 6.4e-108 394.8 334 60.8
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 6.4e-108 394.8 284 68.0
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 3.2e-107 392.5 226 79.2
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 4.2e-107 392.1 223 82.1
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 3.3e-104 382.5 315 64.1
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 2.9e-100 369.4 290 62.1
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 1.1e-99 367.5 339 56.3
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 1.3e-97 360.5 281 67.3
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 3.9e-97 359.0 348 56.0
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 3.7e-95 352.4 205 80.0
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 3.1e-94 349.4 211 78.2
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 5.3e-94 348.6 326 60.1
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 1.2e-90 337.4 312 57.1
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 6.7e-89 331.6 227 67.0
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 6.7e-89 331.6 227 67.0
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 2.1e-87 326.6 320 55.9
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 8.2e-87 324.7 209 73.7
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 8.2e-87 324.7 305 53.8
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 2.6e-85 319.7 320 55.3
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 3.4e-85 319.3 265 63.0
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 6.5e-84 315.1 479 42.0
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 7.6e-77 291.6 220 60.0
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 1.1e-75 287.7 266 57.5
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 2.5e-75 286.6 167 80.8
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 1.1e-72 277.7 280 50.4
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 9.1e-70 268.1 224 61.6
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 5.9e-69 265.4 295 48.8
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 1.0e-68 264.6 226 65.0
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.8e-65 253.8 220 58.6
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.4e-62 244.2 213 60.1
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 1.5e-61 240.7 256 51.6
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 3.6e-58 229.6 208 54.3
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 3.0e-57 226.5 119 84.0
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 3.1e-54 216.5 248 50.8
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 6.5e-52 208.8 160 66.2
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 4.2e-43 179.5 164 56.7
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 2.2e-39 167.2 97 78.4
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.8e-33 147.5 109 65.1
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 4.1e-30 136.3 175 38.3
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 5.0e-28 129.4 154 47.4
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 1.8e-25 120.9 61 86.9
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 1.9e-22 110.9 137 47.4
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.1e-19 101.7 104 51.9
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 3.5e-13 80.1 42 88.1
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.8e-10 70.5 68 57.4
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.8e-10 70.5 68 57.4
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 2.2e-07 60.8 163 35.0
CsaV3_5G018930 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.2e-06 57.0 56 53.6


User provided reference genes

Program Settings