Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 5.3e-256 887.1 424 100.0
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 3.8e-222 774.6 418 87.8
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 1.4e-211 739.6 425 83.3
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 8.3e-209 730.3 419 80.7
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 2.4e-208 728.8 405 84.0
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 2.0e-207 725.7 420 80.5
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 2.0e-207 725.7 422 81.5
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 1.9e-205 719.2 420 79.8
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 1.6e-204 716.1 404 82.7
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 1.7e-198 696.0 348 92.8
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 2.6e-194 682.2 390 79.7
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 2.2e-185 652.5 403 74.2
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 3.8e-185 651.7 402 74.6
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 6.4e-185 651.0 402 74.4
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 1.1e-184 650.2 419 73.7
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 1.4e-184 649.8 402 74.4
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 5.6e-181 637.9 420 71.7
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 3.6e-180 635.2 409 71.6
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 1.4e-179 633.3 400 72.8
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 1.5e-178 629.8 401 72.8
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 9.9e-178 627.1 419 70.6
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 8.4e-177 624.0 403 72.0
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 8.4e-177 624.0 413 70.2
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 8.4e-177 624.0 421 69.8
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 3.2e-176 622.1 417 70.7
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 5.4e-176 621.3 425 68.2
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 3.5e-175 618.6 400 70.8
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 3.5e-175 618.6 401 70.8
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 3.5e-175 618.6 409 69.9
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 1.7e-174 616.3 402 70.6
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 1.1e-173 613.6 398 71.9
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 7.3e-173 610.9 389 71.0
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 7.3e-173 610.9 423 68.8
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 9.6e-173 610.5 415 69.6
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 9.6e-173 610.5 465 63.2
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 1.3e-172 610.1 420 68.6
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 3.6e-172 608.6 422 67.8
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.8e-171 606.3 415 69.9
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 1.2e-170 603.6 389 71.5
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 1.2e-170 603.6 411 68.1
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.0e-170 602.8 394 72.8
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 1.1e-168 597.0 410 67.8
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 5.4e-168 594.7 419 66.6
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 7.1e-168 594.3 419 68.0
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 1.6e-167 593.2 415 69.4
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 2.7e-167 592.4 424 66.3
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 4.6e-167 591.7 391 69.8
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 6.0e-167 591.3 401 69.3
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 7.9e-167 590.9 420 66.4
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 7.9e-167 590.9 366 73.8
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-166 590.5 402 68.4
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 1.8e-166 589.7 387 71.6
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 3.9e-166 588.6 419 66.1
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 5.1e-166 588.2 414 65.9
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 5.1e-166 588.2 429 65.3
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 8.7e-166 587.4 410 66.8
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 8.7e-166 587.4 414 66.4
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 1.5e-165 586.6 414 66.4
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 2.5e-165 585.9 413 69.5
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 3.3e-165 585.5 401 69.3
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 3.3e-165 585.5 404 68.1
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 5.6e-165 584.7 405 67.2
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 7.4e-165 584.3 422 66.8
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 7.4e-165 584.3 467 61.0
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 1.6e-164 583.2 419 66.8
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 3.7e-164 582.0 405 66.9
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 1.1e-163 580.5 424 66.0
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 1.4e-163 580.1 405 66.4
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 2.4e-163 579.3 421 64.8
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 2.4e-163 579.3 416 65.6
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 1.5e-162 576.6 407 67.8
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 3.4e-162 575.5 405 66.4
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 4.5e-162 575.1 408 66.9
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 1.3e-161 573.5 439 62.4
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 1.7e-161 573.2 414 65.7
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 2.9e-161 572.4 409 64.8
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 7.1e-160 567.8 405 64.9
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 3.9e-158 562.0 410 65.6
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 1.1e-157 560.5 414 65.7
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 9.6e-157 557.4 409 65.3
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 9.6e-157 557.4 409 65.3
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 3.7e-156 555.4 348 71.8
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 2.0e-154 549.7 408 64.0
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 6.5e-153 544.7 345 71.3
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 8.4e-153 544.3 372 69.6
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 1.4e-152 543.5 375 66.1
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.5e-149 532.7 367 69.5
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 4.8e-148 528.5 299 78.6
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 1.0e-145 520.8 403 59.1
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 5.5e-144 515.0 436 58.7
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 1.6e-143 513.5 414 59.9
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.1e-139 500.7 367 65.1
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.8e-139 500.0 367 65.1
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 6.5e-137 491.5 408 56.9
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 1.2e-135 487.3 423 57.4
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 3.0e-134 482.6 380 61.8
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 6.7e-134 481.5 336 64.6
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 3.1e-131 472.6 404 56.4
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.0e-131 471.5 414 57.5
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.2e-128 461.5 362 61.9
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 6.7e-126 454.9 346 64.2
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.1e-125 454.1 371 58.2
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 2.2e-124 449.9 346 63.9
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 6.3e-124 448.4 371 58.2
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.2e-124 448.0 412 55.1
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 1.8e-123 446.8 327 64.2
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 1.6e-122 443.7 331 65.0
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 4.5e-122 442.2 363 59.8
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 8.5e-121 438.0 409 53.3
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 9.4e-120 434.5 409 54.0
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 2.6e-117 426.4 320 63.1
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 4.1e-115 419.1 355 59.4
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.2e-112 409.1 415 51.1
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 3.6e-111 406.0 438 47.9
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.7e-108 396.0 247 71.7
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 1.8e-107 393.7 264 71.6
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 2.8e-103 379.8 283 60.4
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 5.7e-101 372.1 274 65.3
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 1.0e-94 351.3 261 63.2
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-94 350.9 272 61.8
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 1.4e-94 350.9 415 44.3
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 2.9e-92 343.2 199 78.4
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 2.3e-89 333.6 200 76.0
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.5e-88 330.9 341 51.0
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.7e-81 307.4 202 71.8
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.3e-81 307.0 202 70.8
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 4.3e-80 302.8 421 40.4
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-78 298.1 222 65.8
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 2.0e-77 293.9 167 79.0
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 1.4e-70 271.2 296 43.2
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 5.1e-65 252.7 165 72.1
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-59 234.2 194 60.3
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-56 224.9 144 71.5
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-56 224.9 144 71.5
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-56 224.9 144 71.5
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.3e-55 221.5 144 70.8
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.3e-52 211.5 154 64.3
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 2.9e-52 210.3 216 50.5
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 6.2e-47 192.6 115 75.7
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.8e-45 186.0 193 48.7
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-40 171.0 96 78.1
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 3.2e-35 153.7 86 80.2
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 2.1e-34 151.0 108 65.7
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 1.8e-33 147.9 100 65.0
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 7.7e-29 132.5 84 71.4
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.2e-23 114.4 62 79.0
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.2e-23 114.4 75 69.3
arahy.Tifrunner.gnm1.ann1.RXWW1P Arachis hypogaea HOM05D001147 ORTHO05D000823 3.9e-17 93.6 51 72.5
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 1.0e-12 79.0 48 77.1
Gohir.A08G000024 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.8e-12 77.0 151 33.1
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 1.5e-11 75.1 66 57.6
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.9e-11 74.7 72 43.1
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.5e-11 74.3 43 74.4
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 5.2e-09 66.6 36 80.6
Dinv44900 Davidia involucrata HOM05D004741 ORTHO05D005454 5.7e-08 63.2 69 52.2
Gohir.A13G000601 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.7e-07 60.5 51 47.1
arahy.Tifrunner.gnm1.ann1.GV0XVU Arachis hypogaea HOM05D001147 ORTHO05D000823 5.3e-06 56.6 61 47.5


User provided reference genes

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