Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G141000 Glycine max HOM05D006723 ORTHO05D008194 2.0e-59 232.3 118 100.0
Glyma.19G143700 Glycine max HOM05D006723 ORTHO05D008194 2.5e-22 109.0 57 91.2
Phvul.001G138000 Phaseolus vulgaris HOM05D006723 ORTHO05D008194 1.8e-20 102.8 57 84.2
Lalb_Chr01g0017581 Lupinus albus HOM05D006723 ORTHO05D008194 4.5e-19 98.2 53 84.9
arahy.Tifrunner.gnm1.ann1.L8GYUR Arachis hypogaea HOM05D006723 ORTHO05D008194 1.3e-18 96.7 58 81.0
arahy.Tifrunner.gnm1.ann1.T5X6Q2 Arachis hypogaea HOM05D006723 ORTHO05D008194 1.3e-18 96.7 58 81.0
VMungo1383G2473 Vigna mungo HOM05D006723 ORTHO05D008194 6.4e-18 94.4 48 91.7
Ca_08490_v3 Cicer arietinum L. HOM05D006723 ORTHO05D008194 1.4e-17 93.2 56 78.6
Ca_30037_v3 Cicer arietinum L. HOM05D006723 ORTHO05D008194 1.4e-17 93.2 56 78.6
Psat3g070520 Pisum sativum HOM05D006723 ORTHO05D008194 3.2e-17 92.0 56 76.8
Medtr7g092470 Medicago truncatula HOM05D006723 ORTHO05D008194 1.6e-16 89.7 56 75.0
Lj1g0026461 Lotus japonicus HOM05D006723 ORTHO05D008194 1.0e-15 87.0 53 83.0
TPR.G4751 Trifolium pratense HOM05D006723 ORTHO05D008194 3.0e-15 85.5 56 71.4
Manes.08G047500 Manihot esculenta HOM05D006723 ORTHO05D008194 1.6e-13 79.7 50 70.0
Dinv18102 Davidia involucrata HOM05D006723 ORTHO05D008194 2.1e-13 79.3 50 72.0
Atru.chr1.947 Acer truncatum HOM05D006723 ORTHO05D008194 3.7e-13 78.6 50 72.0
CiPaw.10G029600 Carya illinoinensis HOM05D006723 ORTHO05D008194 4.8e-13 78.2 51 68.6
Hma1.2p1_0856F.1_g229130 Hydrangea macrophylla HOM05D006723 ORTHO05D008194 6.2e-13 77.8 50 68.0
Hma1.2p1_0856F.1_g229140 Hydrangea macrophylla HOM05D006723 ORTHO05D008194 6.2e-13 77.8 50 68.0
Potri.016G051200 Populus trichocarpa HOM05D006723 ORTHO05D008194 1.4e-12 76.6 54 66.7
Cfa016879 Carpinus fangiana HOM05D006723 ORTHO05D008194 3.1e-12 75.5 50 68.0
QL01p033062 Quercus lobata HOM05D006723 ORTHO05D008194 3.1e-12 75.5 50 68.0
Oeu064326.1 Olea europaea HOM05D006723 ORTHO05D008194 5.3e-12 74.7 49 69.4
ClCG10G017300 Citrullus lanatus HOM05D006723 ORTHO05D008194 6.9e-12 74.3 52 67.3
Cc06_g16430 Coffea canephora HOM05D006723 ORTHO05D008194 6.9e-12 74.3 51 66.7
Haze_19924 Corylus avellana HOM05D000001 ORTHO05D008194 9.0e-12 73.9 48 68.8
Lju124A34T48 Lonicera japonica HOM05D006723 ORTHO05D008194 9.0e-12 73.9 50 64.0
Gohir.D09G122000 Gossypium hirsutum HOM05D006723 ORTHO05D008194 1.2e-11 73.6 56 58.9
Gorai.006G139700 Gossypium raimondii HOM05D006723 ORTHO05D008194 1.2e-11 73.6 56 58.9
CAN.G316.3 Capsicum annuum HOM05D006723 ORTHO05D008194 1.5e-11 73.2 49 69.4
Cpa.g.c34124.1 Carica papaya HOM05D006723 ORTHO05D008194 1.5e-11 73.2 50 64.0
GSVIVG01033349001 Vitis vinifera HOM05D006723 ORTHO05D008194 1.5e-11 73.2 60 63.3
Actinidia09370 Actinidia chinensis HOM05D006723 ORTHO05D008194 2.6e-11 72.4 48 68.8
TAR633G1569 Trochodendron aralioides HOM05D006723 ORTHO05D008194 2.6e-11 72.4 50 62.0
vmacro08024 Vaccinium macrocarpon HOM05D006723 ORTHO05D008194 2.6e-11 72.4 48 66.7
Gohir.A09G125000 Gossypium hirsutum HOM05D006723 ORTHO05D008194 3.4e-11 72.0 56 57.1
Rhsim03G0010800 Rhododendron simsii HOM05D006723 ORTHO05D008194 3.4e-11 72.0 48 68.8
CSS0020210 Camellia sinensis var. sinensis HOM05D006723 ORTHO05D008194 4.5e-11 71.6 47 68.1
CSS0038437 Camellia sinensis var. sinensis HOM05D006723 ORTHO05D008194 4.5e-11 71.6 47 68.1
Solyc03g051770.2 Solanum lycopersicum HOM05D006723 ORTHO05D008194 5.8e-11 71.2 49 67.3
MELO3C009654.2 Cucumis melo HOM05D006723 ORTHO05D008194 7.6e-11 70.9 52 63.5
QL01p034748 Quercus lobata HOM05D006723 ORTHO05D008194 7.6e-11 70.9 50 64.0
CsaV3_3G039110 Cucumis sativus L. HOM05D006723 ORTHO05D008194 9.9e-11 70.5 50 70.0
Thecc.05G165200 Theobroma cacao HOM05D006723 ORTHO05D008194 9.9e-11 70.5 51 60.8
Aqoxy2G00115 Aquilegia oxysepala HOM05D006723 ORTHO05D008194 1.7e-10 69.7 50 62.0
Sopen03g011140 Solanum pennellii HOM05D006723 ORTHO05D008194 1.7e-10 69.7 49 65.3
MSTRG.19888 Avicennia marina HOM05D006723 ORTHO05D008194 2.2e-10 69.3 49 65.3
Sp7g07890 Schrenkiella parvula HOM05D006723 ORTHO05D008194 2.2e-10 69.3 48 60.4
MBI01_g40600_MAGBIO Magnolia biondii HOM05D006723 ORTHO05D008194 2.9e-10 68.9 50 60.0
COL.COLO4_28733 Corchorus olitorius HOM05D006723 ORTHO05D008194 3.8e-10 68.6 47 66.0
PGSC0003DMG400012934 Solanum tuberosum HOM05D006723 ORTHO05D008194 3.8e-10 68.6 49 65.3
HanXRQChr01g0008611 Helianthus annuus HOM05D006723 ORTHO05D008194 4.9e-10 68.2 49 59.2
SalBow6G0316 Salvia bowleyana HOM05D006723 ORTHO05D008194 4.9e-10 68.2 54 59.3
Sed0016384 Sechium edule HOM05D006723 ORTHO05D008194 4.9e-10 68.2 52 65.4
FvH4_6g22970 Fragaria vesca HOM05D006723 ORTHO05D008194 6.4e-10 67.8 50 60.0
FAN02G4120 Fragaria x ananassa HOM05D006723 ORTHO05D008194 6.4e-10 67.8 50 60.0
MD12G1064100 Malus domestica HOM05D006723 ORTHO05D008194 6.4e-10 67.8 50 60.0
Thhalv10005936m.g Eutrema salsugineum HOM05D006723 ORTHO05D008194 8.4e-10 67.4 48 56.2
Sabra16G0055000 Salix brachista HOM05D000001 ORTHO05D008194 8.4e-10 67.4 50 60.0
Eucgr.K01816 Eucalyptus grandis HOM05D006723 ORTHO05D008194 1.1e-09 67.0 51 56.9
Prupe.7G070000 Prunus persica HOM05D006723 ORTHO05D008194 1.1e-09 67.0 50 60.0
Ciclev10004869m.g Citrus clementina HOM05D006723 ORTHO05D008194 1.4e-09 66.6 47 63.8
PSO170G4750 Papaver somniferum HOM05D006723 ORTHO05D008194 1.4e-09 66.6 56 51.8
BcaC03g16488 Brassica carinata HOM05D006723 ORTHO05D008194 1.9e-09 66.2 48 56.2
A02p27180 Brassica napus HOM05D006723 ORTHO05D008194 1.9e-09 66.2 48 56.2
C02p43010 Brassica napus HOM05D006723 ORTHO05D008194 1.9e-09 66.2 48 56.2
BraA02t07735Z Brassica rapa HOM05D006723 ORTHO05D008194 1.9e-09 66.2 48 56.2
AUR62025979 Chenopodium quinoa HOM05D006723 ORTHO05D008194 1.9e-09 66.2 50 58.0
BcaB04g19408 Brassica carinata HOM05D006723 ORTHO05D008194 2.4e-09 65.9 48 56.2
AUR62024376 Chenopodium quinoa HOM05D006723 ORTHO05D008194 2.4e-09 65.9 55 54.5
FAN09G4898 Fragaria x ananassa HOM05D006723 ORTHO05D008194 2.4e-09 65.9 49 59.2
BolC2t10343H Brassica oleracea HOM05D006723 ORTHO05D008194 3.2e-09 65.5 48 56.2
EL10Ac3g06984 Beta vulgaris HOM05D006723 ORTHO05D008194 4.2e-09 65.1 52 57.7
Carub.0005s2465 Capsella rubella HOM05D006723 ORTHO05D008194 4.2e-09 65.1 48 58.3
ECA248G1960 Erigeron canadensis HOM05D006723 ORTHO05D008194 5.5e-09 64.7 50 56.0
PSO063G2548 Papaver somniferum HOM05D006723 ORTHO05D008194 5.5e-09 64.7 56 50.0
Hund24753 Selenicereus undatus HOM05D006723 ORTHO05D008194 5.5e-09 64.7 48 58.3
AL5G39460 Arabidopsis lyrata HOM05D006723 ORTHO05D008194 9.3e-09 63.9 48 54.2
CARHR168110 Cardamine hirsuta HOM05D006723 ORTHO05D008194 1.2e-08 63.5 51 54.9
DCAR_013569 Daucus carota HOM05D006723 ORTHO05D008194 1.2e-08 63.5 49 55.1
Sc15g0003630 Simmondsia chinensis HOM05D006723 ORTHO05D008194 1.2e-08 63.5 50 54.0
THA.LOC104802371 Tarenaya hassleriana HOM05D006723 ORTHO05D008194 1.2e-08 63.5 48 56.2
CANSAT80G0702 Cannabis sativa HOM05D006723 ORTHO05D008194 1.6e-08 63.2 47 59.6
Migut.J01796 Erythranthe guttata HOM05D006723 ORTHO05D008194 1.6e-08 63.2 49 59.2
RcHm_v2.0_Chr3g0480761 Rosa chinensis HOM05D006723 ORTHO05D008194 3.5e-08 62.0 55 58.2
AT3G57790 Arabidopsis thaliana HOM05D006723 ORTHO05D008194 6.0e-08 61.2 53 52.8
Aa31LG10G12530 Aethionema arabicum HOM05D006723 ORTHO05D008194 1.0e-07 60.5 49 53.1
Nn7g36117 Nelumbo nucifera HOM05D006723 ORTHO05D008194 1.8e-07 59.7 50 50.0
TWI77G0276 Tripterygium wilfordii HOM05D006723 ORTHO05D008194 1.8e-07 59.7 61 50.8
Peaxi162Scf00285g00213 Petunia axillaris HOM05D006723 ORTHO05D008194 3.0e-07 58.9 49 61.2
Zm00001eb316640 Zea mays HOM05D006723 ORTHO05D008194 8.7e-07 57.4 48 54.2
CDE07G0652 Ceratophyllum demersum HOM05D006723 ORTHO05D008194 1.5e-06 56.6 50 52.0
Ah.04g152030 Amaranthus hybridus HOM05D006723 ORTHO05D008194 4.3e-06 55.1 52 46.2


User provided reference genes

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