Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G267600 Glycine max HOM05D003359 ORTHO05D019577 4.5e-106 387.9 187 100.0
Glyma.14G049900 Glycine max HOM05D003359 ORTHO05D004472 4.7e-31 138.7 71 90.1
VMungo0647G2422 Vigna mungo HOM05D003359 ORTHO05D000417 5.4e-27 125.2 169 42.0
LjContig00029g0017310 Lotus japonicus HOM05D003359 ORTHO05D004472 5.2e-22 108.6 189 36.0
Phvul.008G214500 Phaseolus vulgaris HOM05D003359 ORTHO05D004472 2.1e-18 96.7 70 64.3
Ciclev10003125m.g Citrus clementina HOM05D003359 ORTHO05D004472 3.0e-17 92.8 205 30.7
QL03p057097 Quercus lobata HOM05D003359 ORTHO05D004472 5.1e-17 92.0 193 31.6
CAN.G272.4 Capsicum annuum HOM05D003359 ORTHO05D004472 7.3e-16 88.2 192 31.2
Medtr8g089725 Medicago truncatula HOM05D003359 ORTHO05D004472 1.6e-15 87.0 216 29.6
QL03p057135 Quercus lobata HOM05D003359 ORTHO05D004472 2.1e-15 86.7 193 30.1
Glyma.02G267700 Glycine max HOM05D003359 ORTHO05D004472 2.8e-15 86.3 75 56.0
Medtr8g089735 Medicago truncatula HOM05D003359 ORTHO05D004472 6.2e-15 85.1 216 29.2
PSO067G0007 Papaver somniferum HOM05D003359 ORTHO05D004472 1.2e-13 80.9 181 29.8
Ciclev10033489m.g Citrus clementina HOM05D003359 ORTHO05D004472 2.0e-13 80.1 113 43.4
FvH4_6g05560 Fragaria vesca HOM05D003359 ORTHO05D004472 2.0e-13 80.1 149 35.6
GSVIVG01000554001 Vitis vinifera HOM05D003359 ORTHO05D005275 2.0e-13 80.1 72 58.3
Medtr8g089780 Medicago truncatula HOM05D003359 ORTHO05D020488 2.6e-13 79.7 126 37.3
Medtr8g089745 Medicago truncatula HOM05D003359 ORTHO05D004472 3.4e-13 79.3 72 51.4
vmacro16179 Vaccinium macrocarpon HOM05D003359 ORTHO05D004472 4.4e-13 79.0 73 57.5
Lalb_Chr07g0185431 Lupinus albus HOM05D003359 ORTHO05D004472 7.6e-13 78.2 71 56.3
Lj6C814T12 Lonicera japonica HOM05D003359 ORTHO05D004472 9.9e-13 77.8 210 29.0
AL5G15150 Arabidopsis lyrata HOM05D003359 ORTHO05D004472 1.7e-12 77.0 74 51.4
arahy.Tifrunner.gnm1.ann1.6M8RVH Arachis hypogaea HOM05D003359 ORTHO05D004472 2.2e-12 76.6 59 62.7
arahy.Tifrunner.gnm1.ann1.9A08C8 Arachis hypogaea HOM05D003359 ORTHO05D004472 2.2e-12 76.6 59 62.7
Lalb_Chr23g0277621 Lupinus albus HOM05D003359 ORTHO05D004472 2.9e-12 76.3 56 64.3
Ca_17782_v3 Cicer arietinum L. HOM05D003359 ORTHO05D004472 3.7e-12 75.9 72 51.4
SalBow2G2300 Salvia bowleyana HOM05D003359 ORTHO05D020488 3.7e-12 75.9 76 50.0
Glyma.05G174200 Glycine max HOM05D003359 ORTHO05D004472 4.9e-12 75.5 38 81.6
Glyma.08G131400 Glycine max HOM05D003359 ORTHO05D004472 4.9e-12 75.5 38 81.6
Sabra10G0020500 Salix brachista HOM05D003359 ORTHO05D006537 4.9e-12 75.5 72 54.2
Phvul.002G259200 Phaseolus vulgaris HOM05D003359 ORTHO05D004472 6.4e-12 75.1 98 43.9
Lj3A1060T75 Lonicera japonica HOM05D003359 ORTHO05D004472 8.4e-12 74.7 79 51.9
Oeu057546.1 Olea europaea HOM05D003359 ORTHO05D004472 8.4e-12 74.7 59 57.6
Actinidia37443 Actinidia chinensis HOM05D003359 ORTHO05D004472 1.1e-11 74.3 110 40.0
Potri.010G048300 Populus trichocarpa HOM05D003359 ORTHO05D004472 1.1e-11 74.3 72 52.8
Aqoxy3G01254 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 1.4e-11 73.9 38 81.6
Lj4g0008357 Lotus japonicus HOM05D003359 ORTHO05D004472 1.4e-11 73.9 72 51.4
Medtr2g096530 Medicago truncatula HOM05D003359 ORTHO05D004472 1.4e-11 73.9 72 51.4
TPR.G6289 Trifolium pratense HOM05D003359 ORTHO05D004472 2.4e-11 73.2 38 78.9
Carub.0005s0430 Capsella rubella HOM05D003359 ORTHO05D004472 3.2e-11 72.8 74 50.0
CiPaw.05G179800 Carya illinoinensis HOM05D003359 ORTHO05D004472 3.2e-11 72.8 72 54.2
Ciclev10030938m.g Citrus clementina HOM05D003359 ORTHO05D004472 3.2e-11 72.8 59 54.2
Glyma.11G243600 Glycine max HOM05D003359 ORTHO05D004472 3.2e-11 72.8 59 54.2
Lj6g0024639 Lotus japonicus HOM05D003359 ORTHO05D004472 3.2e-11 72.8 64 53.1
Medtr8g089740 Medicago truncatula HOM05D003359 ORTHO05D004472 3.2e-11 72.8 71 47.9
QL08p013034 Quercus lobata HOM05D003359 ORTHO05D020488 3.2e-11 72.8 72 52.8
Sabra08G0140300 Salix brachista HOM05D003359 ORTHO05D006537 3.2e-11 72.8 72 52.8
TPR.G6223 Trifolium pratense HOM05D003359 ORTHO05D004472 3.2e-11 72.8 38 78.9
Nn4g22564 Nelumbo nucifera HOM05D003359 ORTHO05D004472 4.1e-11 72.4 38 78.9
Potri.008G185300 Populus trichocarpa HOM05D003359 ORTHO05D004472 4.1e-11 72.4 72 51.4
Ca_25137_v3 Cicer arietinum L. HOM05D003359 ORTHO05D004472 5.4e-11 72.0 71 53.5
Gorai.005G176600 Gossypium raimondii HOM05D003359 ORTHO05D004472 5.4e-11 72.0 71 49.3
Phvul.001G255500 Phaseolus vulgaris HOM05D003359 ORTHO05D004472 5.4e-11 72.0 59 54.2
Medtr3g086580 Medicago truncatula HOM05D003359 ORTHO05D004472 7.1e-11 71.6 72 52.8
AT3G26380 Arabidopsis thaliana HOM05D003359 ORTHO05D004472 9.2e-11 71.2 74 50.0
Psat5g091760 Pisum sativum HOM05D003359 ORTHO05D004472 9.2e-11 71.2 72 51.4
Solyc05g013720.3 Solanum lycopersicum HOM05D003359 ORTHO05D004472 9.2e-11 71.2 98 39.8
Sopen05g008640 Solanum pennellii HOM05D003359 ORTHO05D004472 9.2e-11 71.2 98 39.8
CANSAT01G0511 Cannabis sativa HOM05D003359 ORTHO05D004472 1.2e-10 70.9 38 76.3
MELO3C010698.2 Cucumis melo HOM05D003359 ORTHO05D004472 1.2e-10 70.9 73 49.3
Atru.chr11.2161 Acer truncatum HOM05D003359 ORTHO05D004472 1.6e-10 70.5 38 76.3
CSS0009419 Camellia sinensis var. sinensis HOM05D003359 ORTHO05D004472 1.6e-10 70.5 59 54.2
ClCG08G017630 Citrullus lanatus HOM05D003359 ORTHO05D004472 1.6e-10 70.5 73 50.7
CsaV3_2G025010 Cucumis sativus L. HOM05D003359 ORTHO05D004472 1.6e-10 70.5 59 54.2
Lalb_Chr04g0250081 Lupinus albus HOM05D003359 ORTHO05D004472 1.6e-10 70.5 39 74.4
Nitab4.5_0002787g0030 Nicotiana tabacum HOM05D003359 ORTHO05D004472 1.6e-10 70.5 59 54.2
ATR0824G097 Amborella trichopoda HOM05D003359 ORTHO05D004472 2.1e-10 70.1 72 54.2
Nn3g16675 Nelumbo nucifera HOM05D003359 ORTHO05D004472 2.1e-10 70.1 38 76.3
Potri.010G048400 Populus trichocarpa HOM05D003359 ORTHO05D004472 2.1e-10 70.1 59 54.2
QL03p057173 Quercus lobata HOM05D003359 ORTHO05D004472 2.1e-10 70.1 38 76.3
QL03p057181 Quercus lobata HOM05D003359 ORTHO05D004472 2.1e-10 70.1 38 76.3
TPR.G15855 Trifolium pratense HOM05D003359 ORTHO05D004472 2.1e-10 70.1 57 56.1
TAR622G1186 Trochodendron aralioides HOM05D003359 ORTHO05D004472 2.1e-10 70.1 59 52.5
Duzib251G0748 Durio zibethinus HOM05D003359 ORTHO05D004472 2.7e-10 69.7 59 52.5
FvH4_4g25930 Fragaria vesca HOM05D003359 ORTHO05D004472 2.7e-10 69.7 67 52.2
FAN07G2501 Fragaria x ananassa HOM05D003359 ORTHO05D004472 2.7e-10 69.7 67 52.2
FAN12G2341 Fragaria x ananassa HOM05D003359 ORTHO05D004472 2.7e-10 69.7 67 52.2
FAN12G3248 Fragaria x ananassa HOM05D003359 ORTHO05D004472 2.7e-10 69.7 67 52.2
Lalb_Chr04g0250101 Lupinus albus HOM05D003359 ORTHO05D004472 2.7e-10 69.7 66 50.0
MBI19_g09304_MAGBIO Magnolia biondii HOM05D003359 ORTHO05D004472 2.7e-10 69.7 38 78.9
Nitab4.5_0000229g0100 Nicotiana tabacum HOM05D003359 ORTHO05D004472 2.7e-10 69.7 110 36.4
Hund06039 Selenicereus undatus HOM05D003359 ORTHO05D004472 2.7e-10 69.7 38 76.3
Thecc.02G263100 Theobroma cacao HOM05D003359 ORTHO05D004472 2.7e-10 69.7 38 76.3
Aqoxy5G03710 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 3.5e-10 69.3 59 54.2
arahy.Tifrunner.gnm1.ann1.ISLL24 Arachis hypogaea HOM05D003359 ORTHO05D019577 3.5e-10 69.3 60 55.0
Gohir.A03G133100 Gossypium hirsutum HOM05D003359 ORTHO05D004472 3.5e-10 69.3 59 52.5
Gohir.D02G157400 Gossypium hirsutum HOM05D003359 ORTHO05D004472 3.5e-10 69.3 59 52.5
Psat7g058680 Pisum sativum HOM05D003359 ORTHO05D004472 3.5e-10 69.3 38 73.7
Sed0021427 Sechium edule HOM05D003359 ORTHO05D004472 3.5e-10 69.3 38 76.3
TPR.G30530 Trifolium pratense HOM05D003359 ORTHO05D004472 3.5e-10 69.3 57 56.1
BcaB07g30230 Brassica carinata HOM05D003359 ORTHO05D004472 4.6e-10 68.9 74 47.3
DCAR_029363 Daucus carota HOM05D003359 ORTHO05D004472 4.6e-10 68.9 59 52.5
Dinv14737 Davidia involucrata HOM05D003359 ORTHO05D004472 4.6e-10 68.9 59 52.5
SGA_v2.0_scaffold100G29574 Striga asiatica HOM05D003359 ORTHO05D004472 4.6e-10 68.9 59 55.9
Aqoxy5G03712 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 6.0e-10 68.6 38 73.7
CARHR147390 Cardamine hirsuta HOM05D003359 ORTHO05D004472 6.0e-10 68.6 75 45.3
Thhalv10003806m.g Eutrema salsugineum HOM05D003359 ORTHO05D004472 6.0e-10 68.6 59 49.2
Manes.13G022100 Manihot esculenta HOM05D003359 ORTHO05D004472 6.0e-10 68.6 59 50.8
PSO478G4543 Papaver somniferum HOM05D003359 ORTHO05D004472 6.0e-10 68.6 38 71.1
Sc14g0008780 Simmondsia chinensis HOM05D003359 ORTHO05D004472 6.0e-10 68.6 59 50.8
arahy.Tifrunner.gnm1.ann1.JIIR6A Arachis hypogaea HOM05D003359 ORTHO05D004472 7.8e-10 68.2 64 50.0
CiPaw.11G025500 Carya illinoinensis HOM05D003359 ORTHO05D004472 7.8e-10 68.2 38 73.7
RcHm_v2.0_Chr4g0433401 Rosa chinensis HOM05D003359 ORTHO05D004472 7.8e-10 68.2 38 76.3
Sp2g15530 Schrenkiella parvula HOM05D003359 ORTHO05D004472 7.8e-10 68.2 74 48.6
A02p34540 Brassica napus HOM05D003359 ORTHO05D004472 1.0e-09 67.8 74 47.3
HanXRQChr08g0208381 Helianthus annuus HOM05D003359 ORTHO05D004472 1.0e-09 67.8 38 73.7
MD13G1098300 Malus domestica HOM05D003359 ORTHO05D004472 1.0e-09 67.8 41 65.9
PSO017G1803 Papaver somniferum HOM05D003359 ORTHO05D004472 1.0e-09 67.8 38 71.1
TWI36G1577 Tripterygium wilfordii HOM05D003359 ORTHO05D004472 1.0e-09 67.8 48 62.5
VMungo1383G0093 Vigna mungo HOM05D003359 ORTHO05D004472 1.0e-09 67.8 59 52.5
Aa31LG2G6140 Aethionema arabicum HOM05D003359 ORTHO05D006537 2.3e-09 66.6 73 46.6
BraA02t08464Z Brassica rapa HOM05D003359 ORTHO05D004472 2.3e-09 66.6 41 63.4
Cc11_g15950 Coffea canephora HOM05D003359 ORTHO05D004472 2.3e-09 66.6 101 37.6
BcaC03g17337 Brassica carinata HOM05D003359 ORTHO05D004472 3.0e-09 66.2 74 45.9
Cfa009233 Carpinus fangiana HOM05D003359 ORTHO05D004472 3.9e-09 65.9 38 71.1
COL.COLO4_23483 Corchorus olitorius HOM05D003359 ORTHO05D004472 3.9e-09 65.9 38 71.1
Haze_12269 Corylus avellana HOM05D003359 ORTHO05D006537 3.9e-09 65.9 38 71.1
Eucgr.H02480 Eucalyptus grandis HOM05D003359 ORTHO05D004472 3.9e-09 65.9 72 45.8
MD16G1099400 Malus domestica HOM05D003359 ORTHO05D004472 3.9e-09 65.9 38 71.1
arahy.Tifrunner.gnm1.ann1.5678GR Arachis hypogaea HOM05D003359 ORTHO05D004472 5.1e-09 65.5 38 68.4
arahy.Tifrunner.gnm1.ann1.CUSE89 Arachis hypogaea HOM05D003359 ORTHO05D019577 5.1e-09 65.5 53 62.3
Cpa.g.sc33.46 Carica papaya HOM05D003359 ORTHO05D004472 5.1e-09 65.5 38 71.1
Lsat_1_v5_gn_8_152721 Lactuca sativa HOM05D003359 ORTHO05D004472 5.1e-09 65.5 38 71.1
Peaxi162Scf00128g00456 Petunia axillaris HOM05D003359 ORTHO05D004472 5.1e-09 65.5 38 73.7
THA.LOC104805279 Tarenaya hassleriana HOM05D003359 ORTHO05D004472 5.1e-09 65.5 41 63.4
Eucgr.H02477 Eucalyptus grandis HOM05D003359 ORTHO05D004472 6.6e-09 65.1 73 43.8
PGSC0003DMG400011728 Solanum tuberosum HOM05D003359 ORTHO05D004472 6.6e-09 65.1 36 75.0
Duzib268G0493 Durio zibethinus HOM05D003359 ORTHO05D004472 8.6e-09 64.7 59 49.2
QL08p013016 Quercus lobata HOM05D003359 ORTHO05D019577 8.6e-09 64.7 38 71.1
TWI18G0898 Tripterygium wilfordii HOM05D003359 ORTHO05D004472 8.6e-09 64.7 94 37.2
C02p52860 Brassica napus HOM05D003359 ORTHO05D004472 1.1e-08 64.3 38 68.4
BolC2t11365H Brassica oleracea HOM05D003359 ORTHO05D004472 1.1e-08 64.3 38 68.4
QL03p056989 Quercus lobata HOM05D003359 ORTHO05D004472 1.5e-08 63.9 37 73.0
RcHm_v2.0_Chr3g0454341 Rosa chinensis HOM05D003359 ORTHO05D004472 1.5e-08 63.9 194 27.8
SalBow2G3613 Salvia bowleyana HOM05D003359 ORTHO05D004472 1.5e-08 63.9 38 68.4
MSTRG.7949 Avicennia marina HOM05D003359 ORTHO05D004472 1.9e-08 63.5 72 43.1
Migut.K00614 Erythranthe guttata HOM05D003359 ORTHO05D004472 1.9e-08 63.5 38 65.8
Eucgr.H02479 Eucalyptus grandis HOM05D003359 ORTHO05D004472 1.9e-08 63.5 72 45.8
SEGI_37368 Sequoiadendron giganteum HOM05D003359 ORTHO05D004472 1.9e-08 63.5 36 75.0
ATR0824G255 Amborella trichopoda HOM05D003359 ORTHO05D004472 2.5e-08 63.2 37 70.3
AUR62005500 Chenopodium quinoa HOM05D003359 ORTHO05D004472 2.5e-08 63.2 59 50.8
AUR62024240 Chenopodium quinoa HOM05D003359 ORTHO05D004472 2.5e-08 63.2 59 50.8
Cc11_g15940 Coffea canephora HOM05D003359 ORTHO05D020488 2.5e-08 63.2 73 43.8
Haze_07805 Corylus avellana HOM05D003359 ORTHO05D004472 2.5e-08 63.2 38 68.4
MD13G1098400 Malus domestica HOM05D003359 ORTHO05D004472 2.5e-08 63.2 59 49.2
FAN05G1630 Fragaria x ananassa HOM05D003359 ORTHO05D004472 3.3e-08 62.8 174 28.7
QL08p013031 Quercus lobata HOM05D003359 ORTHO05D004472 3.3e-08 62.8 58 51.7
SEGI_30194 Sequoiadendron giganteum HOM05D003359 ORTHO05D004472 3.3e-08 62.8 38 71.1
SGA_v2.0_scaffold71G23972 Striga asiatica HOM05D003359 ORTHO05D004472 4.3e-08 62.4 38 68.4
Eucgr.H02478 Eucalyptus grandis HOM05D003359 ORTHO05D004472 5.6e-08 62.0 38 68.4
Pp3c11_18080 Physcomitrium patens HOM05D003359 ORTHO05D004472 5.6e-08 62.0 73 45.2
QL03p057114 Quercus lobata HOM05D003359 ORTHO05D020488 5.6e-08 62.0 72 41.7
Mapoly0016s0175 Marchantia polymorpha HOM05D003359 ORTHO05D004472 7.3e-08 61.6 37 67.6
PGR119G1467 Punica granatum HOM05D003359 ORTHO05D004472 7.3e-08 61.6 72 48.6
SMO147G0306 Selaginella moellendorffii HOM05D003359 ORTHO05D004472 7.3e-08 61.6 40 70.0
HPP92_023372 Vanilla planifolia HOM05D003359 ORTHO05D004472 7.3e-08 61.6 41 63.4
Lalb_Chr04g0250051 Lupinus albus HOM05D003359 ORTHO05D004472 9.6e-08 61.2 37 67.6
Lalb_Chr04g0250071 Lupinus albus HOM05D003359 ORTHO05D004472 9.6e-08 61.2 37 67.6
Prupe.1G247000 Prunus persica HOM05D003359 ORTHO05D004472 9.6e-08 61.2 38 65.8
CDE02G4268 Ceratophyllum demersum HOM05D003359 ORTHO05D004472 1.2e-07 60.8 34 79.4
Zm00001eb409230 Zea mays HOM05D003359 ORTHO05D004472 1.2e-07 60.8 37 67.6
Mapoly0033s0125 Marchantia polymorpha HOM05D003359 ORTHO05D004472 1.6e-07 60.5 38 71.1
SMO164G0149 Selaginella moellendorffii HOM05D003359 ORTHO05D004472 1.6e-07 60.5 39 66.7
QL03p057161 Quercus lobata HOM05D003359 ORTHO05D020488 2.1e-07 60.1 72 41.7
FAN05G3491 Fragaria x ananassa HOM05D003359 ORTHO05D004472 2.8e-07 59.7 195 26.7
Lj3C275T6 Lonicera japonica HOM05D003359 ORTHO05D004472 3.6e-07 59.3 130 30.8
AagrBONN_evm.TU.Sc2ySwM_362.590 Anthoceros agrestis HOM05D003359 ORTHO05D004472 6.2e-07 58.5 39 71.8
Os01g0518500 Oryza sativa ssp. japonica HOM05D003359 ORTHO05D004472 8.1e-07 58.2 38 63.2
TPR.G6291 Trifolium pratense HOM05D003359 ORTHO05D004472 8.1e-07 58.2 58 50.0
HPP92_023360 Vanilla planifolia HOM05D003359 ORTHO05D004472 8.1e-07 58.2 72 41.7
HPP92_023373 Vanilla planifolia HOM05D003359 ORTHO05D004472 8.1e-07 58.2 72 41.7
Aqoxy515s001 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 1.1e-06 57.8 32 78.1
SEGI_05831 Sequoiadendron giganteum HOM05D003359 ORTHO05D004472 1.1e-06 57.8 64 46.9
TWI36G0326 Tripterygium wilfordii HOM05D003359 ORTHO05D004472 1.4e-06 57.4 76 40.8
AUR62005279 Chenopodium quinoa HOM05D003359 ORTHO05D004472 1.8e-06 57.0 60 45.0
ATR0824G135 Amborella trichopoda HOM05D003359 ORTHO05D019577 3.1e-06 56.2 35 65.7
SMO356G0596 Selaginella moellendorffii HOM05D003359 ORTHO05D004472 3.1e-06 56.2 42 61.9
unitig_22.g6428 Utricularia gibba HOM05D003359 ORTHO05D004472 3.1e-06 56.2 38 60.5
Lju551A3T2 Lonicera japonica HOM05D003359 ORTHO05D019577 4.0e-06 55.8 34 67.6
EL10Ac6g13871 Beta vulgaris HOM05D003359 ORTHO05D004472 6.8e-06 55.1 34 73.5
Lj3P287T13 Lonicera japonica HOM05D003359 ORTHO05D019577 6.8e-06 55.1 35 62.9


User provided reference genes

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