Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 3.3e-93 345.1 185 100.0
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 1.5e-69 266.5 165 86.1
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 6.5e-57 224.6 160 80.0
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 3.2e-56 222.2 167 76.0
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 7.1e-56 221.1 151 83.4
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 1.0e-54 217.2 166 78.3
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 8.7e-54 214.2 146 80.8
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 1.5e-53 213.4 153 74.5
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 1.6e-52 209.9 147 78.9
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 3.7e-52 208.8 158 74.7
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 1.4e-51 206.8 157 74.5
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 3.1e-51 205.7 164 72.0
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 4.1e-51 205.3 151 76.2
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 4.1e-51 205.3 160 73.1
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 5.3e-51 204.9 164 73.2
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 1.2e-50 203.8 164 73.2
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 1.5e-50 203.4 152 71.7
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 1.5e-50 203.4 160 74.4
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 2.0e-50 203.0 163 74.8
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 2.6e-50 202.6 144 78.5
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 2.6e-50 202.6 166 74.1
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 3.4e-50 202.2 139 77.7
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 4.5e-50 201.8 163 73.0
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 5.9e-50 201.4 160 73.8
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 1.0e-49 200.7 162 71.0
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 1.0e-49 200.7 164 72.6
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 1.0e-49 200.7 157 73.9
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 1.3e-49 200.3 163 71.8
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 1.3e-49 200.3 175 69.7
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 1.3e-49 200.3 152 71.7
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.7e-49 199.9 164 69.5
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 2.2e-49 199.5 164 72.0
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 2.2e-49 199.5 144 78.5
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 2.9e-49 199.1 163 71.2
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 3.8e-49 198.7 141 81.6
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 6.5e-49 198.0 163 70.6
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 6.5e-49 198.0 174 69.0
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 1.1e-48 197.2 142 80.3
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 1.4e-48 196.8 165 69.7
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 1.9e-48 196.4 168 71.4
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 1.9e-48 196.4 147 74.1
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 2.5e-48 196.1 148 68.2
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 2.5e-48 196.1 148 68.2
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 7.2e-48 194.5 151 68.2
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 7.2e-48 194.5 170 67.1
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 9.3e-48 194.1 140 80.0
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 9.3e-48 194.1 140 80.0
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 9.3e-48 194.1 140 80.0
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 9.3e-48 194.1 131 75.6
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 1.2e-47 193.7 140 80.0
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 1.2e-47 193.7 140 80.0
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.2e-47 193.7 142 75.4
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 1.2e-47 193.7 131 72.5
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 1.2e-47 193.7 152 67.1
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 2.1e-47 193.0 155 72.3
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 2.1e-47 193.0 165 69.1
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 3.6e-47 192.2 162 67.3
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 6.1e-47 191.4 164 64.0
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 6.1e-47 191.4 164 68.3
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 1.3e-46 190.3 158 65.8
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 1.3e-46 190.3 134 77.6
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 2.3e-46 189.5 151 70.2
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 3.9e-46 188.7 157 72.6
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 6.7e-46 188.0 163 68.1
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 8.7e-46 187.6 140 77.1
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 8.7e-46 187.6 155 69.7
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 1.5e-45 186.8 142 74.6
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 2.5e-45 186.0 157 66.9
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 3.3e-45 185.7 147 69.4
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 3.3e-45 185.7 138 77.5
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 3.3e-45 185.7 136 71.3
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 4.3e-45 185.3 153 68.0
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 5.7e-45 184.9 163 64.4
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 9.7e-45 184.1 138 76.8
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 9.7e-45 184.1 156 63.5
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 1.3e-44 183.7 170 64.1
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 1.6e-44 183.3 144 74.3
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 2.8e-44 182.6 140 76.4
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 3.7e-44 182.2 132 73.5
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 6.3e-44 181.4 148 73.0
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 6.3e-44 181.4 163 61.3
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 1.4e-43 180.3 158 63.9
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 1.4e-43 180.3 167 64.7
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 1.8e-43 179.9 160 67.5
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 3.1e-43 179.1 149 71.8
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 4.1e-43 178.7 136 67.6
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 2.6e-42 176.0 207 50.7
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 3.4e-42 175.6 153 62.1
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 7.7e-42 174.5 135 69.6
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 8.5e-41 171.0 116 83.6
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 1.9e-40 169.9 116 81.9
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 2.5e-40 169.5 143 65.7
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 4.2e-40 168.7 131 69.5
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 5.5e-40 168.3 132 75.0
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 1.0e-38 164.1 114 78.1
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 6.7e-38 161.4 116 71.6
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 9.7e-37 157.5 131 73.3
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 9.7e-37 157.5 161 61.5
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 8.2e-36 154.5 116 69.8
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 1.8e-35 153.3 91 86.8
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 1.8e-35 153.3 91 86.8
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 2.4e-35 152.9 101 81.2
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 1.5e-34 150.2 101 77.2
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 1.0e-33 147.5 91 83.5
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 6.5e-33 144.8 127 68.5
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 6.1e-31 138.3 153 59.5
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 1.0e-30 137.5 126 59.5
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 1.7e-25 120.2 105 61.9
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 2.5e-24 116.3 164 45.1
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 1.6e-23 113.6 118 48.3
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 3.0e-22 109.4 185 41.6
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 1.5e-21 107.1 118 50.0
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 9.7e-21 104.4 118 50.0
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 3.5e-18 95.9 80 61.2
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 7.7e-18 94.7 167 41.9
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 6.5e-17 91.7 52 84.6
Dinv13370 Davidia involucrata HOM05D006016 ORTHO05D007553 5.7e-13 78.6 104 49.0
Dinv01676 Davidia involucrata HOM05D006016 ORTHO05D007553 2.7e-10 69.7 65 63.1
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 3.5e-10 69.3 71 54.9
Dinv16891 Davidia involucrata HOM05D006016 ORTHO05D007553 1.0e-09 67.8 65 67.7
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 1.5e-08 63.9 56 67.9
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 9.5e-08 61.2 57 59.6
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 1.0e-06 57.8 112 38.4
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 1.4e-06 57.4 46 67.4
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 5.2e-06 55.5 161 32.3


User provided reference genes

Program Settings