Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G020400 Glycine max HOM05D002811 ORTHO05D003053 2.5e-68 261.9 127 100.0
Glyma.02G019900 Glycine max HOM05D002811 ORTHO05D003053 3.5e-46 188.3 98 92.9
Glyma.01G043000 Glycine max HOM05D002811 ORTHO05D003053 5.3e-42 174.5 98 86.7
Phvul.002G089800 Phaseolus vulgaris HOM05D002811 ORTHO05D003053 1.9e-36 156.0 100 76.0
Lalb_Chr17g0340411 Lupinus albus HOM05D002811 ORTHO05D003053 3.0e-29 132.1 107 61.7
Lalb_Chr04g0256301 Lupinus albus HOM05D002811 ORTHO05D003053 3.7e-27 125.2 110 56.4
Lj4g0017465 Lotus japonicus HOM05D002811 ORTHO05D003053 1.8e-26 122.9 107 57.9
VMungo0251G1690 Vigna mungo HOM05D002811 ORTHO05D003053 3.1e-26 122.1 107 57.0
Phvul.003G068800 Phaseolus vulgaris HOM05D002811 ORTHO05D003053 6.9e-26 120.9 107 57.0
QL03p065467 Quercus lobata HOM05D002811 ORTHO05D003053 6.9e-26 120.9 106 59.4
AT1G14410 Arabidopsis thaliana HOM05D002811 ORTHO05D003053 9.0e-26 120.6 107 56.1
Glyma.08G297200 Glycine max HOM05D002811 ORTHO05D003053 2.6e-25 119.0 108 57.4
Manes.01G189300 Manihot esculenta HOM05D002811 ORTHO05D003053 2.6e-25 119.0 107 56.1
Thecc.02G354200 Theobroma cacao HOM05D002811 ORTHO05D003053 3.4e-25 118.6 107 55.1
arahy.Tifrunner.gnm1.ann1.YZ1SAE Arachis hypogaea HOM05D002811 ORTHO05D003053 4.5e-25 118.2 106 56.6
BraA08t35120Z Brassica rapa HOM05D002811 ORTHO05D003053 4.5e-25 118.2 107 54.2
Prupe.1G269100 Prunus persica HOM05D002811 ORTHO05D003053 7.6e-25 117.5 110 51.8
Sp1g12780 Schrenkiella parvula HOM05D002811 ORTHO05D003053 7.6e-25 117.5 107 53.3
CiPaw.06G081400 Carya illinoinensis HOM05D002811 ORTHO05D003053 1.0e-24 117.1 107 55.1
RcHm_v2.0_Chr4g0440511 Rosa chinensis HOM05D002811 ORTHO05D003053 1.0e-24 117.1 107 56.1
BcaB03g13099 Brassica carinata HOM05D002811 ORTHO05D003053 1.3e-24 116.7 107 54.2
Dinv24963 Davidia involucrata HOM05D002811 ORTHO05D003053 1.3e-24 116.7 107 57.9
AL1G26300 Arabidopsis lyrata HOM05D002811 ORTHO05D003053 1.7e-24 116.3 107 54.2
BcaC07g38735 Brassica carinata HOM05D002811 ORTHO05D003053 2.9e-24 115.5 107 53.3
C08p16630 Brassica napus HOM05D002811 ORTHO05D003053 2.9e-24 115.5 107 53.3
BolC8t49290H Brassica oleracea HOM05D002811 ORTHO05D003053 2.9e-24 115.5 107 53.3
CANSAT64G0034 Cannabis sativa HOM05D002811 ORTHO05D003053 2.9e-24 115.5 107 54.2
Carub.0001s1411 Capsella rubella HOM05D002811 ORTHO05D003053 3.8e-24 115.2 107 52.3
CSS0003597 Camellia sinensis var. sinensis HOM05D002811 ORTHO05D003053 6.5e-24 114.4 105 56.2
CSS0037400 Camellia sinensis var. sinensis HOM05D002811 ORTHO05D003053 6.5e-24 114.4 105 56.2
MD16G1077800 Malus domestica HOM05D002811 ORTHO05D003053 6.5e-24 114.4 110 51.8
CiPaw.05G139000 Carya illinoinensis HOM05D002811 ORTHO05D003053 8.4e-24 114.0 106 55.7
Hma1.2p1_0265F.1_g106610 Hydrangea macrophylla HOM05D002811 ORTHO05D003053 8.4e-24 114.0 107 55.1
Lj2g0012688 Lotus japonicus HOM05D002811 ORTHO05D003053 8.4e-24 114.0 90 61.1
Potri.008G149100 Populus trichocarpa HOM05D002811 ORTHO05D003053 8.4e-24 114.0 107 54.2
PGR119G0719 Punica granatum HOM05D002811 ORTHO05D003053 8.4e-24 114.0 107 52.3
FvH4_4g31850 Fragaria vesca HOM05D002811 ORTHO05D003053 1.1e-23 113.6 107 53.3
FAN12G3575 Fragaria x ananassa HOM05D002811 ORTHO05D003053 1.1e-23 113.6 107 53.3
FAN17G1220 Fragaria x ananassa HOM05D002811 ORTHO05D003053 1.1e-23 113.6 107 53.3
Gorai.013G077400 Gossypium raimondii HOM05D002811 ORTHO05D003053 1.1e-23 113.6 107 51.4
Atru.chr11.1896 Acer truncatum HOM05D002811 ORTHO05D003053 1.4e-23 113.2 107 53.3
MSTRG.677 Avicennia marina HOM05D002811 ORTHO05D003053 1.4e-23 113.2 107 53.3
Lalb_Chr05g0230261 Lupinus albus HOM05D002811 ORTHO05D003053 1.4e-23 113.2 108 53.7
CARHR145170 Cardamine hirsuta HOM05D002811 ORTHO05D003053 1.9e-23 112.8 109 49.5
AL5G11930 Arabidopsis lyrata HOM05D002811 ORTHO05D003053 2.5e-23 112.5 109 49.5
Ciclev10032427m.g Citrus clementina HOM05D002811 ORTHO05D003053 2.5e-23 112.5 107 53.3
AT2G02740 Arabidopsis thaliana HOM05D002811 ORTHO05D003053 3.2e-23 112.1 109 48.6
Solyc05g007100.3 Solanum lycopersicum HOM05D002811 ORTHO05D003053 3.2e-23 112.1 107 55.1
vmacro16331 Vaccinium macrocarpon HOM05D002811 ORTHO05D003053 3.2e-23 112.1 109 54.1
GSVIVG01020061001 Vitis vinifera HOM05D002811 ORTHO05D003053 3.2e-23 112.1 107 57.0
Eucgr.G02539 Eucalyptus grandis HOM05D002811 ORTHO05D003053 5.5e-23 111.3 107 52.3
HanXRQChr15g0478051 Helianthus annuus HOM05D002811 ORTHO05D003053 7.1e-23 110.9 107 54.2
Lsat_1_v5_gn_3_50760 Lactuca sativa HOM05D002811 ORTHO05D003053 7.1e-23 110.9 107 53.3
CARHR014850 Cardamine hirsuta HOM05D002811 ORTHO05D003053 9.3e-23 110.5 108 51.9
COL.COLO4_23042 Corchorus olitorius HOM05D002811 ORTHO05D003053 9.3e-23 110.5 107 54.2
ECA246G2524 Erigeron canadensis HOM05D000131 ORTHO05D003053 1.2e-22 110.2 107 53.3
Sopen05g003070 Solanum pennellii HOM05D002811 ORTHO05D003053 1.2e-22 110.2 107 54.2
PGSC0003DMG400017627 Solanum tuberosum HOM05D002811 ORTHO05D003053 1.2e-22 110.2 107 54.2
CAN.G279.16 Capsicum annuum HOM05D002811 ORTHO05D003053 1.6e-22 109.8 107 53.3
Cc11_g13390 Coffea canephora HOM05D002811 ORTHO05D003053 1.6e-22 109.8 107 53.3
Duzib268G0877 Durio zibethinus HOM05D002811 ORTHO05D003053 1.6e-22 109.8 105 52.4
THA.LOC104805139 Tarenaya hassleriana HOM05D002811 ORTHO05D003053 1.6e-22 109.8 107 51.4
MD13G1078000 Malus domestica HOM05D002811 ORTHO05D003053 2.1e-22 109.4 107 51.4
Migut.L01333 Erythranthe guttata HOM05D002811 ORTHO05D003053 2.7e-22 109.0 108 53.7
Rhsim12G0130500 Rhododendron simsii HOM05D002811 ORTHO05D003053 2.7e-22 109.0 98 54.1
Dinv34209 Davidia involucrata HOM05D002811 ORTHO05D003053 3.5e-22 108.6 107 54.2
Carub.0005s0165 Capsella rubella HOM05D002811 ORTHO05D003053 4.6e-22 108.2 109 46.8
TPR.G33277 Trifolium pratense HOM05D002811 ORTHO05D003053 4.6e-22 108.2 109 51.4
Aa31LG2G7520 Aethionema arabicum HOM05D002811 ORTHO05D003053 7.9e-22 107.5 107 50.5
Sp2g13850 Schrenkiella parvula HOM05D002811 ORTHO05D003053 7.9e-22 107.5 109 46.8
BcaC06g34043 Brassica carinata HOM05D002811 ORTHO05D003053 1.0e-21 107.1 108 49.1
C07p33350 Brassica napus HOM05D002811 ORTHO05D003053 1.0e-21 107.1 108 49.1
BolC7t43845H Brassica oleracea HOM05D002811 ORTHO05D003053 1.0e-21 107.1 108 49.1
Thhalv10004763m.g Eutrema salsugineum HOM05D002811 ORTHO05D003053 1.0e-21 107.1 108 49.1
FAN07G0400 Fragaria x ananassa HOM05D002811 ORTHO05D003053 1.3e-21 106.7 109 51.4
Nitab4.5_0000879g0050 Nicotiana tabacum HOM05D002811 ORTHO05D003053 1.3e-21 106.7 97 54.6
THA.LOC104822102 Tarenaya hassleriana HOM05D002811 ORTHO05D003053 1.3e-21 106.7 108 52.8
TAR374G0396 Trochodendron aralioides HOM05D002811 ORTHO05D003053 1.8e-21 106.3 107 52.3
BcaC06g31219 Brassica carinata HOM05D002811 ORTHO05D003053 2.3e-21 105.9 108 48.1
Nn4g23066 Nelumbo nucifera HOM05D002811 ORTHO05D003053 2.3e-21 105.9 98 53.1
Oeu001589.1 Olea europaea HOM05D000046 ORTHO05D001818 2.3e-21 105.9 107 53.3
Medtr8g468570 Medicago truncatula HOM05D002811 ORTHO05D003053 3.0e-21 105.5 111 51.4
Nn3g17141 Nelumbo nucifera HOM05D002811 ORTHO05D003053 3.0e-21 105.5 107 50.5
TWI18G1272 Tripterygium wilfordii HOM05D002811 ORTHO05D003053 3.9e-21 105.1 117 48.7
Actinidia31186 Actinidia chinensis HOM05D002811 ORTHO05D003053 5.1e-21 104.8 107 50.5
ATR0001G008 Amborella trichopoda HOM05D002811 ORTHO05D003053 5.1e-21 104.8 102 51.0
Medtr5g038560 Medicago truncatula HOM05D002811 ORTHO05D003053 6.7e-21 104.4 103 56.3
Psat2g124480 Pisum sativum HOM05D002811 ORTHO05D003053 6.7e-21 104.4 106 52.8
A06p43510 Brassica napus HOM05D002811 ORTHO05D003053 1.9e-20 102.8 109 48.6
BraA06t27236Z Brassica rapa HOM05D002811 ORTHO05D003053 1.9e-20 102.8 109 48.6
Ca_11514_v3 Cicer arietinum L. HOM05D002811 ORTHO05D003053 2.5e-20 102.4 109 50.5
MELO3C019785.2 Cucumis melo HOM05D002811 ORTHO05D003053 2.5e-20 102.4 108 49.1
CsaV3_6G036290 Cucumis sativus L. HOM05D002811 ORTHO05D003053 5.7e-20 101.3 108 48.1
Sabra08G0113300 Salix brachista HOM05D002811 ORTHO05D003053 5.7e-20 101.3 139 43.2
TPR.G13775 Trifolium pratense HOM05D002811 ORTHO05D003053 9.7e-20 100.5 108 50.0
PSO832G4142 Papaver somniferum HOM05D002811 ORTHO05D003053 1.3e-19 100.1 111 51.4
EL10Ac6g13159 Beta vulgaris HOM05D002811 ORTHO05D003053 1.6e-19 99.8 107 48.6
Psat4g130960 Pisum sativum HOM05D002811 ORTHO05D003053 2.8e-19 99.0 111 48.6
SGA_v2.0_scaffold302G47852 Striga asiatica HOM05D002811 ORTHO05D003053 1.1e-18 97.1 97 51.5
HPP92_021792 Vanilla planifolia HOM05D002811 ORTHO05D003053 1.2e-17 93.6 107 44.9
CDE05G1853 Ceratophyllum demersum HOM05D002811 ORTHO05D003053 4.5e-17 91.7 107 44.9
AUR62028826 Chenopodium quinoa HOM05D002811 ORTHO05D003053 1.3e-16 90.1 129 38.8
Sed0010977 Sechium edule HOM05D002811 ORTHO05D003053 1.3e-16 90.1 109 44.0
Aqoxy3G03287 Aquilegia oxysepala HOM05D002811 ORTHO05D003053 5.0e-16 88.2 107 46.7
MBI03_g40814_MAGBIO Magnolia biondii HOM05D002811 ORTHO05D003053 3.2e-15 85.5 62 62.9
A08p31990 Brassica napus HOM05D002811 ORTHO05D003053 4.2e-15 85.1 62 54.8
Os06g0145800 Oryza sativa ssp. japonica HOM05D002811 ORTHO05D003053 5.5e-15 84.7 107 43.9
DCAR_007135 Daucus carota HOM05D002811 ORTHO05D003053 1.6e-14 83.2 72 56.9
Peaxi162Scf00209g00226 Petunia axillaris HOM05D002811 ORTHO05D003053 1.4e-13 80.1 80 48.8
SalBow2G0512 Salvia bowleyana HOM05D002811 ORTHO05D003053 3.0e-13 79.0 78 51.3
ClCG08G008880 Citrullus lanatus HOM05D002811 ORTHO05D003053 6.7e-13 77.8 113 38.9
Nitab4.5_0010498g0030 Nicotiana tabacum HOM05D002811 ORTHO05D003053 2.5e-12 75.9 62 54.8
AUR62005735 Chenopodium quinoa HOM05D002811 ORTHO05D003053 1.7e-11 73.2 84 40.5
Cfa009022 Carpinus fangiana HOM05D002811 ORTHO05D003053 3.7e-11 72.0 69 52.2
Actinidia08218 Actinidia chinensis HOM05D002811 ORTHO05D003053 6.3e-11 71.2 84 41.7
Hund05904 Selenicereus undatus HOM05D002811 ORTHO05D003053 1.1e-10 70.5 62 53.2
SEGI_31475 Sequoiadendron giganteum HOM05D002811 ORTHO05D003053 4.1e-10 68.6 84 42.9
SEGI_34690 Sequoiadendron giganteum HOM05D002811 ORTHO05D003053 5.3e-10 68.2 86 43.0
Mapoly0007s0156 Marchantia polymorpha HOM05D002811 ORTHO05D003053 2.6e-09 65.9 97 36.1
Cpa.g.sc1007.4 Carica papaya HOM05D002811 ORTHO05D003053 7.7e-09 64.3 77 49.4
SEGI_11117 Sequoiadendron giganteum HOM05D002811 ORTHO05D003053 1.7e-08 63.2 83 37.3
PSO017G4825 Papaver somniferum HOM05D002811 ORTHO05D003053 2.9e-08 62.4 114 31.6
BcaB03g14884 Brassica carinata HOM05D002811 ORTHO05D003053 6.5e-08 61.2 77 40.3
Cc10_g16120 Coffea canephora HOM05D002811 ORTHO05D003053 6.5e-08 61.2 107 30.8
Gohir.D13G067900 Gossypium hirsutum HOM05D002811 ORTHO05D003053 8.5e-08 60.8 74 43.2
BcaC08g46562 Brassica carinata HOM05D002811 ORTHO05D003053 1.1e-07 60.5 77 39.0
BolC6t39594H Brassica oleracea HOM05D002811 ORTHO05D003053 1.1e-07 60.5 77 39.0
Aqoxy6G00040 Aquilegia oxysepala HOM05D002811 ORTHO05D003053 3.2e-07 58.9 108 34.3
BraA07t31322Z Brassica rapa HOM05D002811 ORTHO05D003053 3.2e-07 58.9 77 37.7
Nn1g08408 Nelumbo nucifera HOM05D002811 ORTHO05D003053 2.7e-06 55.8 79 34.2
ATR1089G056 Amborella trichopoda HOM05D002811 ORTHO05D003053 3.6e-06 55.5 81 34.6
MBI06_g32148_MAGBIO Magnolia biondii HOM05D002811 ORTHO05D003053 3.6e-06 55.5 110 34.5
Os02g0158400 Oryza sativa ssp. japonica HOM05D002811 ORTHO05D003053 3.6e-06 55.5 107 29.0
ECA232G0438 Erigeron canadensis HOM05D002811 ORTHO05D003053 4.7e-06 55.1 94 31.9
Sp5g26460 Schrenkiella parvula HOM05D002811 ORTHO05D003053 6.1e-06 54.7 77 36.4


User provided reference genes

Program Settings