Gene: Sopen05g003070

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g003070
  • Transcript Identifier Sopen05g003070.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 1823605-1825268 : positive

Gene Family Information

  • ID HOM05D002811
  • #Genes/#Species 246/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g003070.1

Descriptions

  • Description Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length. | WHIRLY 1 (WHY1) | FUNCTIONS IN: DNA binding, telomeric DNA binding | INVOLVED IN: negative regulation of telomere maintenance via telomerase, defense response | LOCATED IN: plastid chromosome, chloroplast, nucleoid, telomerase holoenzyme complex | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator , Plant transcription factor | BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0050832
ISO
PLAZA Integrative Orthologydefense response to fungus PGSC0003DMG400017627
GO:0032211
ISO
PLAZA Integrative Orthologynegative regulation of telomere maintenance via telomerase AT1G14410
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated PGSC0003DMG400017627
GO:0045910
ISO
PLAZA Integrative Orthologynegative regulation of DNA recombination Zm00001eb270470
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT2G02740
GO:0006952
IEA
InterProdefense response
GO:0006355
IEA
InterProregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G02740
GO:0042162
ISO
PLAZA Integrative Orthologytelomeric DNA binding AT1G14410
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding Zm00001eb270470
GO:0003700
ISO
PLAZA Integrative OrthologyDNA-binding transcription factor activity PGSC0003DMG400017627
GO:0003677
IEA
InterProDNA binding
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding PGSC0003DMG400017627
GO:0003697
IEA
InterProsingle-stranded DNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G02740
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT2G02740
GO:0009508
ISO
PLAZA Integrative Orthologyplastid chromosome AT2G02740
GO:0042644
ISO
PLAZA Integrative Orthologychloroplast nucleoid AT2G02740
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma Zm00001eb270470

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009044 ssDNA-binding transcriptional regulator
IPR013742 Whirly transcription factor
Mapman id Description
13.5.7.1 Cell cycle organisation.organellar DNA replication.DNA recombination.recombination mediator (Whirly)