Gene: AT2G02740

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G02740
  • Transcript Identifier AT2G02740.1
  • Gene Type Coding gene
  • Location Chr2 : 769389-770993 : positive

Gene Family Information

  • ID HOM05D002811
  • #Genes/#Species 246/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G02740.1
  • symbol WHY3
  • Alias ATWHY3,A. THALIANA WHIRLY 3,PTAC11,PLASTID TRANSCRIPTIONALLY ACTIVE11
  • full_name WHIRLY 3
  • uniprot Q66GR6

Descriptions

  • Description ssDNA-binding transcriptional regulator
  • Computational description WHIRLY 3 (WHY3); FUNCTIONS IN: DNA binding; INVOLVED IN: defense response; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Plant transcription factor (InterPro:IPR013742); BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT1G14410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006952
IEA
GOA Databasedefense response
GO:0006952
TAS
Gene Ontologydefense response1
GO:0006952
IEA
InterProdefense response
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IMP
Gene OntologyDNA repair2
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006355
IEA
Gene Ontologyregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated PGSC0003DMG400017627
GO:0050832
ISO
PLAZA Integrative Orthologydefense response to fungus PGSC0003DMG400017627
GO:0045910
ISO
PLAZA Integrative Orthologynegative regulation of DNA recombination Zm00001eb270470

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IDA
ISS
Gene OntologyDNA binding2 3
GO:0003677
IEA
InterProDNA binding
GO:0003697
IEA
Gene Ontologysingle-stranded DNA binding
GO:0003697
IEA
InterProsingle-stranded DNA binding
GO:0003700
ISO
PLAZA Integrative OrthologyDNA-binding transcription factor activity PGSC0003DMG400017627
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding Zm00001eb270470
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding PGSC0003DMG400017627
GO:0003729
IDA, HDA
Gene OntologymRNA binding4 5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009508
IDA
GOA Databaseplastid chromosome
GO:0009536
IEA
GOA Databaseplastid
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma6
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast3 7
GO:0005634
IDA
Gene Ontologynucleus3
GO:0042644
IDA
GOA Databasechloroplast nucleoid
GO:0042644
HDA
Gene Ontologychloroplast nucleoid8
GO:0005739
HDA
Gene Ontologymitochondrion9

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013742 Whirly transcription factor
IPR009044 ssDNA-binding transcriptional regulator
Mapman id Description
13.5.7.1 Cell cycle organisation.organellar DNA replication.DNA recombination.recombination mediator (Whirly)