Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 1.9e-198 695.7 357 100.0
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 3.5e-176 621.7 358 90.8
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 8.6e-175 617.1 360 90.0
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 4.1e-169 598.2 365 87.1
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 2.7e-168 595.5 365 87.4
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 2.1e-165 585.9 323 92.9
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 8.9e-164 580.5 356 87.4
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 5.4e-161 571.2 340 85.9
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 9.3e-161 570.5 337 86.6
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 1.2e-160 570.1 352 83.2
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 7.8e-160 567.4 343 84.8
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 1.3e-159 566.6 340 85.9
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 4.3e-158 561.6 343 85.1
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.3e-157 560.1 332 87.3
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 3.6e-157 558.5 364 81.0
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 3.6e-157 558.5 340 84.7
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 8.1e-157 557.4 352 81.8
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 1.1e-156 557.0 357 81.2
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.4e-156 556.6 343 84.0
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 1.8e-156 556.2 330 85.5
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 1.8e-156 556.2 338 84.3
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 1.8e-156 556.2 325 86.5
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 2.4e-156 555.8 357 81.0
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 3.1e-156 555.4 343 83.4
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 4.0e-156 555.1 356 81.7
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 5.3e-156 554.7 378 78.0
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 6.9e-156 554.3 330 86.7
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 9.0e-156 553.9 338 83.1
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 9.0e-156 553.9 334 84.7
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 1.2e-155 553.5 343 83.4
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 1.5e-155 553.1 350 82.0
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 1.5e-155 553.1 329 86.0
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 2.6e-155 552.4 359 80.2
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 4.5e-155 551.6 353 80.7
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 1.3e-154 550.1 329 85.4
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 1.3e-154 550.1 334 84.1
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 1.3e-154 550.1 334 83.5
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 1.3e-154 550.1 345 81.2
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.3e-154 550.1 330 85.8
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 1.7e-154 549.7 330 85.2
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 1.7e-154 549.7 343 82.5
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 1.7e-154 549.7 325 85.8
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 2.2e-154 549.3 338 84.0
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 6.4e-154 547.7 329 85.4
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 6.4e-154 547.7 339 82.3
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.1e-153 547.0 358 79.6
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.4e-153 546.6 331 84.0
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 1.9e-153 546.2 348 81.3
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.9e-153 546.2 336 81.5
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 2.4e-153 545.8 341 81.2
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.2e-153 545.4 336 83.9
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.2e-153 545.4 336 83.9
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.2e-153 545.0 322 85.4
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.2e-153 545.0 322 85.4
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 5.4e-153 544.7 322 85.4
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 7.1e-153 544.3 328 85.4
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 9.3e-153 543.9 328 84.8
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 2.7e-152 542.3 339 82.6
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 2.7e-152 542.3 343 81.9
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 3.5e-152 542.0 330 83.6
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.6e-152 541.6 323 84.8
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 6.0e-152 541.2 323 84.8
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 7.9e-152 540.8 353 79.6
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 1.0e-151 540.4 370 77.6
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 1.0e-151 540.4 359 79.4
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 2.3e-151 539.3 332 83.1
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 2.3e-151 539.3 328 83.5
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 3.0e-151 538.9 346 78.6
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 3.9e-151 538.5 387 76.2
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 5.1e-151 538.1 323 84.8
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 5.1e-151 538.1 331 84.0
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 6.6e-151 537.7 327 82.9
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 8.7e-151 537.3 322 85.1
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 1.1e-150 537.0 337 80.1
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.1e-150 537.0 323 83.9
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 1.1e-150 537.0 353 79.6
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 1.5e-150 536.6 328 82.3
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 1.5e-150 536.6 361 76.7
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 1.9e-150 536.2 338 80.5
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 2.5e-150 535.8 361 76.7
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 2.5e-150 535.8 375 76.3
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 2.5e-150 535.8 315 87.6
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 3.3e-150 535.4 337 80.4
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 7.4e-150 534.3 346 80.1
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 9.6e-150 533.9 345 79.1
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 9.6e-150 533.9 346 78.6
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 1.3e-149 533.5 346 78.0
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 2.1e-149 532.7 346 78.6
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 2.1e-149 532.7 346 78.6
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 2.8e-149 532.3 342 81.3
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 3.6e-149 531.9 346 78.3
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 3.6e-149 531.9 341 81.5
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 6.2e-149 531.2 361 76.2
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 6.2e-149 531.2 345 78.3
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 1.1e-148 530.4 340 81.5
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.1e-148 530.4 371 75.5
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.4e-148 530.0 343 79.9
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 1.8e-148 529.6 338 79.6
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 2.4e-148 529.3 372 75.3
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 3.1e-148 528.9 346 78.0
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 3.1e-148 528.9 346 78.9
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.1e-148 528.9 346 78.9
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 3.1e-148 528.9 322 83.2
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 5.3e-148 528.1 357 77.0
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 5.3e-148 528.1 346 78.0
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 5.3e-148 528.1 339 79.9
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 6.9e-148 527.7 353 77.1
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 6.9e-148 527.7 353 77.1
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 5.8e-147 524.6 327 82.3
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 5.8e-147 524.6 351 78.6
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 2.2e-146 522.7 353 76.2
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 2.2e-146 522.7 353 76.2
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 2.9e-146 522.3 327 82.0
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 6.4e-146 521.2 323 83.0
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.1e-145 520.4 366 73.2
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.1e-145 520.4 328 79.6
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 1.4e-145 520.0 334 79.6
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 3.2e-145 518.8 371 72.5
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.5e-145 518.1 300 86.0
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 7.1e-145 517.7 298 86.9
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 9.3e-145 517.3 349 77.7
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 1.6e-144 516.5 428 66.4
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.7e-144 515.8 343 78.1
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.7e-144 515.8 343 78.1
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 2.7e-144 515.8 334 79.0
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 4.6e-144 515.0 320 82.8
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.5e-142 509.2 340 78.2
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 4.3e-142 508.4 324 79.6
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 4.8e-141 505.0 406 68.2
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 6.2e-141 504.6 340 77.4
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 3.4e-139 498.8 287 86.4
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.9e-138 495.0 287 86.4
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 3.5e-136 488.8 350 74.0
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 6.0e-136 488.0 346 73.4
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 3.9e-135 485.3 333 77.8
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 5.1e-135 485.0 361 71.5
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 3.3e-134 482.3 340 72.9
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 3.3e-134 482.3 326 75.5
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 9.6e-134 480.7 324 75.9
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.6e-133 479.9 342 72.2
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 6.3e-133 478.0 339 72.9
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 2.2e-130 469.5 318 74.8
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 8.5e-130 467.6 325 72.9
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 9.3e-129 464.2 292 83.2
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 6.1e-128 461.5 322 73.3
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 7.9e-128 461.1 301 76.4
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 3.9e-127 458.8 299 77.3
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 2.0e-115 419.9 306 69.3
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 2.2e-109 399.8 322 63.7
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 7.0e-108 394.8 250 80.0
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 1.5e-105 387.1 233 85.8
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 9.4e-105 384.4 229 86.9
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 3.5e-99 365.9 289 65.1
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 2.7e-91 339.7 257 70.4
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 1.6e-80 303.9 288 62.5
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 1.8e-71 273.9 165 85.5
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 6.8e-71 271.9 190 75.8
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 2.7e-67 260.0 308 49.7
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.8e-63 247.3 331 48.0
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 7.3e-57 225.3 112 98.2
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 6.4e-45 185.7 113 82.3
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 3.9e-42 176.4 168 60.1
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 3.9e-42 176.4 192 54.7
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 3.9e-42 176.4 192 54.7
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 4.3e-33 146.4 301 33.6
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 2.8e-32 143.7 104 67.3
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 2.4e-31 140.6 102 68.6
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 2.4e-31 140.6 102 68.6
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 6.9e-31 139.0 101 67.3
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 1.5e-30 137.9 102 67.6
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 1.3e-29 134.8 106 64.2
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 4.2e-28 129.8 107 59.8
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 6.0e-27 125.9 106 59.4
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 1.8e-18 97.8 64 71.9
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 3.3e-17 93.6 67 76.1
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 1.6e-16 91.3 61 82.0
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 8.2e-16 89.0 49 85.7
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 2.4e-07 60.8 38 71.1
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 2.6e-06 57.4 38 68.4


User provided reference genes

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