Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 4.3e-208 728.0 447 100.0
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 7.5e-176 620.9 448 88.6
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 4.6e-149 531.9 449 69.3
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 8.3e-143 511.1 449 68.6
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 2.4e-126 456.4 456 64.5
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 3.7e-106 389.4 448 56.9
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 7.6e-104 381.7 465 59.1
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 2.7e-101 373.2 453 55.4
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 1.2e-96 357.8 459 60.8
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 3.8e-95 352.8 511 57.9
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 4.6e-93 345.9 544 54.6
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 6.7e-92 342.0 544 54.6
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 5.7e-83 312.4 550 49.8
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 1.5e-75 287.7 346 48.8
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 4.0e-68 263.1 348 46.3
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 1.5e-67 261.2 336 47.9
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 7.5e-67 258.8 348 45.7
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 1.8e-65 254.2 329 47.4
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 3.8e-63 246.5 336 45.5
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 6.5e-63 245.7 357 43.7
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 2.5e-62 243.8 336 45.5
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 3.2e-62 243.4 339 46.0
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 7.2e-62 242.3 356 43.0
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 7.2e-62 242.3 357 45.4
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 1.2e-61 241.5 352 46.6
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 1.8e-60 237.7 335 45.7
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 2.0e-59 234.2 331 46.2
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 2.6e-59 233.8 340 43.8
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 5.7e-59 232.6 341 45.2
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 7.5e-59 232.3 341 45.2
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 4.8e-58 229.6 335 46.3
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 6.3e-58 229.2 336 43.2
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 1.4e-57 228.0 400 41.2
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 2.4e-57 227.3 282 52.8
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 4.1e-57 226.5 354 42.9
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 5.4e-57 226.1 337 43.6
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 1.2e-56 224.9 335 42.7
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 1.2e-56 224.9 407 38.1
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 2.0e-56 224.2 389 39.3
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 1.7e-55 221.1 340 41.8
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 2.9e-55 220.3 378 41.5
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 5.0e-55 219.5 237 51.9
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 8.6e-55 218.8 398 39.7
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 6.1e-53 212.6 332 43.1
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 1.0e-52 211.8 332 43.1
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 1.8e-52 211.1 332 43.1
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 2.3e-52 210.7 385 39.2
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 2.3e-52 210.7 339 43.7
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 3.0e-52 210.3 440 38.2
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 3.0e-52 210.3 385 39.2
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 1.2e-51 208.4 332 42.2
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 2.0e-51 207.6 335 40.9
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 5.7e-51 206.1 442 37.3
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 7.5e-51 205.7 327 41.9
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 9.8e-51 205.3 325 44.0
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 1.3e-50 204.9 331 41.4
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 1.7e-50 204.5 341 42.8
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 4.9e-50 203.0 330 40.3
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 4.9e-50 203.0 331 42.6
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 3.2e-49 200.3 334 39.2
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 4.1e-49 199.9 340 39.7
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 9.2e-49 198.7 440 37.7
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 9.2e-49 198.7 165 57.0
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 7.8e-48 195.7 382 37.7
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 7.8e-48 195.7 445 36.0
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 1.0e-47 195.3 329 42.2
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 1.3e-47 194.9 391 35.5
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 1.7e-47 194.5 445 36.2
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 2.3e-47 194.1 401 37.4
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 2.3e-47 194.1 332 41.6
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 2.9e-47 193.7 387 36.4
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 1.1e-46 191.8 323 40.2
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 2.5e-46 190.7 414 37.4
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 3.6e-45 186.8 413 35.8
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 8.0e-45 185.7 345 38.3
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 1.0e-44 185.3 327 39.1
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 1.8e-44 184.5 342 38.6
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 2.3e-44 184.1 406 37.9
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 4.0e-44 183.3 413 36.3
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 1.5e-43 181.4 431 35.0
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 1.5e-43 181.4 430 34.4
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 2.6e-43 180.6 432 35.0
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 2.6e-43 180.6 324 40.4
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 3.4e-43 180.3 422 35.8
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 7.5e-43 179.1 264 42.0
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 6.4e-42 176.0 318 39.3
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 1.4e-41 174.9 431 34.8
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 1.4e-41 174.9 406 34.7
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 4.1e-41 173.3 406 34.5
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 2.3e-39 167.5 415 32.8
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 3.9e-39 166.8 324 37.7
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 3.9e-39 166.8 324 37.7
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 5.0e-39 166.4 416 32.5
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 1.5e-38 164.9 414 32.6
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 3.3e-38 163.7 422 33.6
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 3.1e-36 157.1 351 35.9
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 2.6e-35 154.1 261 39.8
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 9.8e-35 152.1 267 41.6
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 1.9e-33 147.9 341 33.7
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 2.4e-33 147.5 300 37.0
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 6.0e-32 142.9 153 49.0
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 2.5e-30 137.5 153 47.7
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 3.3e-30 137.1 157 45.2
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 2.8e-29 134.0 312 34.3
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 1.1e-25 122.1 147 46.3
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 5.1e-23 113.2 331 30.5
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 1.9e-22 111.3 232 33.6
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 4.3e-22 110.2 314 29.0
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 1.3e-18 98.6 125 48.0
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 2.9e-18 97.4 269 29.0
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 2.8e-13 80.9 71 53.5
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 4.4e-11 73.6 64 56.2
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 1.6e-08 65.1 58 56.9
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 1.6e-08 65.1 58 56.9


User provided reference genes

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