Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01037241001 Vitis vinifera HOM05D002725 ORTHO05D438117 1.5e-80 302.8 150 100.0
ECA233G4284 Erigeron canadensis HOM05D002725 ORTHO05D003279 1.1e-09 67.4 49 69.4
Eucgr.H02616 Eucalyptus grandis HOM05D002725 ORTHO05D003279 1.1e-09 67.4 49 69.4
HanXRQChr08g0234721 Helianthus annuus HOM05D002725 ORTHO05D003279 1.4e-09 67.0 49 69.4
Hma1.2p1_0867F.1_g230300 Hydrangea macrophylla HOM05D002725 ORTHO05D003279 1.4e-09 67.0 49 69.4
Lsat_1_v5_gn_1_10560 Lactuca sativa HOM05D002725 ORTHO05D003279 1.4e-09 67.0 49 69.4
Lsat_1_v5_gn_8_158161 Lactuca sativa HOM05D002725 ORTHO05D003279 1.4e-09 67.0 49 69.4
PSO063G5148 Papaver somniferum HOM05D002725 ORTHO05D003279 1.4e-09 67.0 49 67.3
PSO832G2366 Papaver somniferum HOM05D002725 ORTHO05D003279 1.4e-09 67.0 49 67.3
Potri.002G176000 Populus trichocarpa HOM05D002725 ORTHO05D003279 1.4e-09 67.0 49 69.4
Potri.014G102800 Populus trichocarpa HOM05D002725 ORTHO05D003279 1.4e-09 67.0 49 69.4
Sabra02G0137700 Salix brachista HOM05D002725 ORTHO05D003279 1.4e-09 67.0 49 69.4
GSVIVG01020223001 Vitis vinifera HOM05D002725 ORTHO05D003279 1.4e-09 67.0 49 69.4
FvH4_1g17710 Fragaria vesca HOM05D002725 ORTHO05D003279 2.4e-09 66.2 52 63.5
FAN19G1008 Fragaria x ananassa HOM05D002725 ORTHO05D003279 2.4e-09 66.2 52 63.5
FAN23G0685 Fragaria x ananassa HOM05D002725 ORTHO05D003279 2.4e-09 66.2 52 63.5
FAN26G2216 Fragaria x ananassa HOM05D002725 ORTHO05D003279 2.4e-09 66.2 52 63.5
FAN28G0598 Fragaria x ananassa HOM05D002725 ORTHO05D003279 2.4e-09 66.2 52 63.5
MD02G1186000 Malus domestica HOM05D002725 ORTHO05D003279 2.4e-09 66.2 52 63.5
Prupe.5G061600 Prunus persica HOM05D002725 ORTHO05D003279 2.4e-09 66.2 52 63.5
Prupe.6G220500 Prunus persica HOM05D002725 ORTHO05D003279 2.4e-09 66.2 52 63.5
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 2.4e-09 66.2 49 67.3
RcHm_v2.0_Chr2g0108041 Rosa chinensis HOM05D002725 ORTHO05D003279 2.4e-09 66.2 52 63.5
Cpa.g.sc824.3 Carica papaya HOM05D002725 ORTHO05D003279 3.1e-09 65.9 49 67.3
Lj1g0003905 Lotus japonicus HOM05D002725 ORTHO05D003279 3.1e-09 65.9 52 61.5
CAN.G1178.23 Capsicum annuum HOM05D002725 ORTHO05D003279 4.1e-09 65.5 49 67.3
Ca_25613_v3 Cicer arietinum L. HOM05D002725 ORTHO05D003279 4.1e-09 65.5 49 67.3
Migut.K01129 Erythranthe guttata HOM05D002725 ORTHO05D003279 4.1e-09 65.5 49 67.3
Lalb_Chr22g0360531 Lupinus albus HOM05D002725 ORTHO05D003279 4.1e-09 65.5 49 67.3
Medtr7g037560 Medicago truncatula HOM05D002725 ORTHO05D003279 4.1e-09 65.5 49 67.3
Peaxi162Scf00301g00128 Petunia axillaris HOM05D002725 ORTHO05D003279 4.1e-09 65.5 49 67.3
Psat3g161280 Pisum sativum HOM05D002725 ORTHO05D003279 4.1e-09 65.5 49 67.3
SalBow2G2496 Salvia bowleyana HOM05D002725 ORTHO05D003279 4.1e-09 65.5 49 67.3
Solyc08g078430.4 Solanum lycopersicum HOM05D002725 ORTHO05D003279 4.1e-09 65.5 49 67.3
Sopen08g026920 Solanum pennellii HOM05D002725 ORTHO05D003279 4.1e-09 65.5 49 67.3
PGSC0003DMG400004771 Solanum tuberosum HOM05D002725 ORTHO05D003279 4.1e-09 65.5 49 67.3
TPR.G9070 Trifolium pratense HOM05D002725 ORTHO05D003279 4.1e-09 65.5 49 67.3
Actinidia01708 Actinidia chinensis HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
ATR0680G011 Amborella trichopoda HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
MSTRG.7887 Avicennia marina HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
CSS0011985 Camellia sinensis var. sinensis HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
CSS0030976 Camellia sinensis var. sinensis HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
CANSAT56G0776 Cannabis sativa HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 65.3
CiPaw.05G149700 Carya illinoinensis HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
CiPaw.14G100600 Carya illinoinensis HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
CDE11G0115 Ceratophyllum demersum HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
Ca_06608_v3 Cicer arietinum L. HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
COL.COLO4_36975 Corchorus olitorius HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
Haze_12164 Corylus avellana HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
DCAR_031095 Daucus carota HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 65.3
Dinv24871 Davidia involucrata HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
Duzib106G0624 Durio zibethinus HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
Duzib268G0345 Durio zibethinus HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
Glyma.16G063000 Glycine max HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
Glyma.19G082500 Glycine max HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
Gohir.A03G140600 Gossypium hirsutum HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
Gohir.D02G163400 Gossypium hirsutum HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
Gorai.005G183400 Gossypium raimondii HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
Nitab4.5_0001381g0050 Nicotiana tabacum HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
Nitab4.5_0002289g0110 Nicotiana tabacum HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
Phvul.003G041300 Phaseolus vulgaris HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
QL03p061701 Quercus lobata HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
SMO139G0072 Selaginella moellendorffii HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
Thecc.02G244300 Theobroma cacao HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
TWI75G1526 Tripterygium wilfordii HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
VMungo0464G0614 Vigna mungo HOM05D002725 ORTHO05D003279 5.3e-09 65.1 49 67.3
AagrBONN_evm.TU.Sc2ySwM_368.3392 Anthoceros agrestis HOM05D002725 ORTHO05D003279 6.9e-09 64.7 76 50.0
Aqoxy3G02968 Aquilegia oxysepala HOM05D002725 ORTHO05D003279 6.9e-09 64.7 49 65.3
arahy.Tifrunner.gnm1.ann1.D69TB6 Arachis hypogaea HOM05D002725 ORTHO05D003279 6.9e-09 64.7 49 65.3
arahy.Tifrunner.gnm1.ann1.JTBU3D Arachis hypogaea HOM05D002725 ORTHO05D003279 6.9e-09 64.7 49 65.3
arahy.Tifrunner.gnm1.ann1.JXF13M Arachis hypogaea HOM05D002725 ORTHO05D003279 6.9e-09 64.7 49 65.3
arahy.Tifrunner.gnm1.ann1.LYET28 Arachis hypogaea HOM05D002725 ORTHO05D003279 6.9e-09 64.7 49 65.3
BcaB04g20253 Brassica carinata HOM05D002725 ORTHO05D003279 6.9e-09 64.7 49 67.3
BcaC02g10686 Brassica carinata HOM05D002725 ORTHO05D003279 6.9e-09 64.7 49 67.3
BcaC06g31807 Brassica carinata HOM05D002725 ORTHO05D003279 6.9e-09 64.7 49 67.3
BcaC09g49421 Brassica carinata HOM05D002725 ORTHO05D003279 6.9e-09 64.7 49 67.3
A01p29130 Brassica napus HOM05D002725 ORTHO05D003279 6.9e-09 64.7 49 67.3
C01p36870 Brassica napus HOM05D002725 ORTHO05D003279 6.9e-09 64.7 49 67.3
C05p51290 Brassica napus HOM05D002725 ORTHO05D003279 6.9e-09 64.7 49 67.3
BolC1t03648H Brassica oleracea HOM05D002725 ORTHO05D003279 6.9e-09 64.7 49 67.3
BolC4t24141H Brassica oleracea HOM05D002725 ORTHO05D003279 6.9e-09 64.7 49 67.3
BraA01t02981Z Brassica rapa HOM05D002725 ORTHO05D003279 6.9e-09 64.7 49 67.3
THA.LOC104812782 Tarenaya hassleriana HOM05D002725 ORTHO05D003279 6.9e-09 64.7 49 65.3
THA.LOC104816751 Tarenaya hassleriana HOM05D002725 ORTHO05D003279 6.9e-09 64.7 49 65.3
Aa31LG2G10130 Aethionema arabicum HOM05D002725 ORTHO05D003279 9.1e-09 64.3 49 65.3
Aqoxy3G02785 Aquilegia oxysepala HOM05D002725 ORTHO05D003279 9.1e-09 64.3 49 65.3
AL2G16480 Arabidopsis lyrata HOM05D002725 ORTHO05D003279 9.1e-09 64.3 49 65.3
EL10Ac6g13658 Beta vulgaris HOM05D002725 ORTHO05D003279 9.1e-09 64.3 49 67.3
Carub.0002s0508 Capsella rubella HOM05D002725 ORTHO05D003279 9.1e-09 64.3 49 65.3
CARHR292010 Cardamine hirsuta HOM05D002725 ORTHO05D003279 9.1e-09 64.3 49 65.3
Thhalv10023432m.g Eutrema salsugineum HOM05D002725 ORTHO05D003279 9.1e-09 64.3 49 65.3
Manes.12G030200 Manihot esculenta HOM05D002725 ORTHO05D003279 9.1e-09 64.3 49 65.3
Manes.13G031300 Manihot esculenta HOM05D002725 ORTHO05D003279 9.1e-09 64.3 49 65.3
Mapoly0042s0037 Marchantia polymorpha HOM05D002725 ORTHO05D003279 9.1e-09 64.3 49 65.3
Pp3c5_26190 Physcomitrium patens HOM05D002725 ORTHO05D003279 9.1e-09 64.3 49 65.3
Sp2g04490 Schrenkiella parvula HOM05D002725 ORTHO05D003279 9.1e-09 64.3 49 65.3
Hund25340 Selenicereus undatus HOM05D002725 ORTHO05D003279 9.1e-09 64.3 49 67.3
AagrBONN_evm.TU.Sc2ySwM_344.2036 Anthoceros agrestis HOM05D002725 ORTHO05D003279 1.2e-08 63.9 49 63.3
AUR62005361 Chenopodium quinoa HOM05D002725 ORTHO05D003279 1.2e-08 63.9 49 65.3
AUR62014016 Chenopodium quinoa HOM05D002725 ORTHO05D003279 1.2e-08 63.9 49 65.3
PGR119G1015 Punica granatum HOM05D002725 ORTHO05D003279 1.2e-08 63.9 52 59.6
Ciclev10031363m.g Citrus clementina HOM05D002725 ORTHO05D003279 1.5e-08 63.5 49 65.3
Phvul.008G149300 Phaseolus vulgaris HOM05D002725 ORTHO05D003279 2.0e-08 63.2 49 65.3
SHI27131 Sapria himalayana HOM05D002725 ORTHO05D003279 2.0e-08 63.2 127 37.0
Sed0004453 Sechium edule HOM05D002725 ORTHO05D003279 2.0e-08 63.2 49 65.3
TAR371G0609 Trochodendron aralioides HOM05D002725 ORTHO05D003279 2.0e-08 63.2 57 59.6
ClCG05G025230 Citrullus lanatus HOM05D002725 ORTHO05D003279 2.6e-08 62.8 49 65.3
MELO3C012005.2 Cucumis melo HOM05D002725 ORTHO05D003279 2.6e-08 62.8 49 65.3
CsaV3_5G031650 Cucumis sativus L. HOM05D002725 ORTHO05D003279 2.6e-08 62.8 49 65.3
DCAR_025614 Daucus carota HOM05D002725 ORTHO05D003279 2.6e-08 62.8 49 63.3
Ah.02g129870 Amaranthus hybridus HOM05D002725 ORTHO05D003279 3.4e-08 62.4 48 64.6
AT1G60170 Arabidopsis thaliana HOM05D002725 ORTHO05D003279 3.4e-08 62.4 49 63.3
TAR629G1020 Trochodendron aralioides HOM05D002725 ORTHO05D003279 3.4e-08 62.4 50 68.0
CAN.G1178.19 Capsicum annuum HOM05D002725 ORTHO05D003279 4.5e-08 62.0 49 65.3
Cc11_g14540 Coffea canephora HOM05D002725 ORTHO05D003279 4.5e-08 62.0 48 64.6
MD15G1297400 Malus domestica HOM05D002725 ORTHO05D003279 4.5e-08 62.0 51 60.8
BcaC05g25456 Brassica carinata HOM05D002725 ORTHO05D003279 5.9e-08 61.6 50 62.0
C05p13400 Brassica napus HOM05D002725 ORTHO05D003279 5.9e-08 61.6 50 62.0
BolC5t30077H Brassica oleracea HOM05D002725 ORTHO05D003279 5.9e-08 61.6 50 62.0
Nn3g16917 Nelumbo nucifera HOM05D002725 ORTHO05D003279 5.9e-08 61.6 49 61.2
unitig_22.g6933 Utricularia gibba HOM05D002725 ORTHO05D003279 5.9e-08 61.6 49 63.3
A06p11270 Brassica napus HOM05D002725 ORTHO05D003279 1.0e-07 60.8 50 62.0
BraA06t24307Z Brassica rapa HOM05D002725 ORTHO05D003279 1.0e-07 60.8 50 62.0
Zm00001eb074440 Zea mays HOM05D002725 ORTHO05D003279 1.3e-07 60.5 49 63.3
CBR_g50945 Chara braunii HOM05D002725 ORTHO05D003279 1.7e-07 60.1 52 55.8
Os04g0555400 Oryza sativa ssp. japonica HOM05D002725 ORTHO05D003279 1.7e-07 60.1 49 63.3
Os07g0141600 Oryza sativa ssp. japonica HOM05D002725 ORTHO05D003279 1.7e-07 60.1 49 63.3
BcaC05g25461 Brassica carinata HOM05D002725 ORTHO05D003279 2.2e-07 59.7 50 64.0
TPR.G10571 Trifolium pratense HOM05D002725 ORTHO05D003279 2.2e-07 59.7 49 61.2
TPR.G37028 Trifolium pratense HOM05D002725 ORTHO05D003279 2.9e-07 59.3 49 61.2
AL3G44040 Arabidopsis lyrata HOM05D002725 ORTHO05D003279 3.8e-07 58.9 49 59.2
Peaxi162Scf01086g00013 Petunia axillaris HOM05D002725 ORTHO05D003279 6.5e-07 58.2 48 60.4
PSO832G3550 Papaver somniferum HOM05D002725 ORTHO05D003279 8.5e-07 57.8 48 62.5
ECA233G0293 Erigeron canadensis HOM05D002725 ORTHO05D003279 1.4e-06 57.0 50 60.0
Nitab4.5_0001219g0140 Nicotiana tabacum HOM05D002725 ORTHO05D003279 1.4e-06 57.0 48 58.3
SGA_v2.0_scaffold165G38254 Striga asiatica HOM05D002725 ORTHO05D003279 1.4e-06 57.0 46 60.9
COL.COLO4_32664 Corchorus olitorius HOM05D002725 ORTHO05D003279 1.9e-06 56.6 47 59.6
PGSC0003DMG400019262 Solanum tuberosum HOM05D002725 ORTHO05D003279 2.5e-06 56.2 63 44.4
Aqoxy1G03248 Aquilegia oxysepala HOM05D002725 ORTHO05D003279 9.4e-06 54.3 46 58.7


User provided reference genes

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